AT3G56800 : CALMODULIN 3
Query Information
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AGICode AT3G56800
Description calmodulin 3
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G56800 calmodulin 3 CALMODULIN 3, calmodulin 3 1 0.33 -0.32
2 AT3G49720 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane, Golgi apparatus, plasma
membrane, membrane; EXPRESSED IN: 25 plant structures;
EXPRESSED DURING: 15 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G65810.1); Has 64 Blast hits to 64 proteins in 11
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.82 0.31 -0.33
3 AT3G04830 Protein prenylyltransferase superfamily protein 0.81 0.32 -0.33
4 AT1G65650 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 UCH2 0.8 0.3 -0.33
5 AT1G34350 unknown protein; Has 192 Blast hits to 192 proteins in 79
species: Archae - 0; Bacteria - 0; Metazoa - 104; Fungi -
0; Plants - 60; Viruses - 0; Other Eukaryotes - 28 (source:
NCBI BLink).		 0.8 0.32 -0.34
6 AT1G78040 Pollen Ole e 1 allergen and extensin family protein 0.79 0.32 -0.34
7 AT1G05850 Chitinase family protein ATCTL1, CHITINASE-LIKE PROTEIN 1,
ECTOPIC DEPOSITION OF LIGNIN IN
PITH, ECTOPIC DEPOSITION OF LIGNIN
IN PITH 1, ECTOPIC ROOT HAIR 2,
SENSITIVE TO HOT TEMPERATURES 2,
POM-POM1		 0.78 0.33 -0.31
8 AT5G14790 ARM repeat superfamily protein 0.78 0.33 -0.33
9 AT3G01100 hypothetical protein 1 ARABIDOPSIS THALIANA HYPOTHETICAL
PROTEIN 1, hypothetical protein 1		 -0.78 0.32 -0.32
10 AT1G10430 protein phosphatase 2A-2 protein phosphatase 2A-2 0.78 0.31 -0.32
11 AT5G16480 Phosphotyrosine protein phosphatases superfamily protein AtPFA-DSP5, plant and fungi
atypical dual-specificity
phosphatase 5		 0.77 0.28 -0.3
12 AT1G52910 Protein of unknown function (DUF1218) 0.77 0.31 -0.32
13 AT3G22460 O-acetylserine (thiol) lyase (OAS-TL) isoform A2 O-acetylserine (thiol) lyase
(OAS-TL) isoform A2		 -0.77 0.32 -0.32
14 AT5G19050 alpha/beta-Hydrolases superfamily protein 0.77 0.32 -0.31
15 AT1G69030 BSD domain-containing protein 0.77 0.3 -0.32
16 AT2G19760 profilin 1 PROFILIN 1, profilin 1 0.77 0.3 -0.3
17 AT3G43720 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 0.77 0.35 -0.31
18 AT1G10630 ADP-ribosylation factor A1F ADP-ribosylation factor A1F,
ADP-ribosylation factor A1F		 0.77 0.31 -0.33
19 AT2G32580 Protein of unknown function (DUF1068) 0.77 0.31 -0.31
20 AT5G58030 Transport protein particle (TRAPP) component 0.77 0.3 -0.32
21 AT3G22110 20S proteasome alpha subunit C1 20S proteasome alpha subunit C1 0.77 0.31 -0.3
22 AT2G25760 Protein kinase family protein -0.76 0.3 -0.31
23 AT1G71900 Protein of unknown function (DUF803) 0.76 0.34 -0.32
24 AT2G18245 alpha/beta-Hydrolases superfamily protein 0.76 0.3 -0.32
25 AT1G47200 WPP domain protein 2 WPP domain protein 2 0.76 0.29 -0.32
26 AT2G03350 Protein of unknown function, DUF538 0.76 0.32 -0.32
27 AT3G46030 Histone superfamily protein HTB11 0.76 0.34 -0.3
28 AT1G16010 magnesium transporter 2 AtMGT2, AtMRS2-1, magnesium
transporter 2, MRS2-1		 -0.75 0.31 -0.33
29 AT1G17680 tetratricopeptide repeat (TPR)-containing protein -0.75 0.3 -0.35
30 AT2G30410 tubulin folding cofactor A (KIESEL) KIESEL, TUBULIN FOLDING FACTOR A 0.75 0.31 -0.31
31 AT4G12020 protein kinase family protein ATWRKY19, MITOGEN-ACTIVATED
PROTEIN KINASE KINASE KINASE 11,
MAPK/ERK KINASE KINASE 4, WRKY19		 -0.75 0.3 -0.31
32 AT5G58230 Transducin/WD40 repeat-like superfamily protein ARABIDOPSIS MULTICOPY SUPRESSOR OF
IRA1, MATERNAL EFFECT EMBRYO
ARREST 70, MULTICOPY SUPRESSOR OF
IRA1		 0.75 0.31 -0.31
33 AT1G65660 Pre-mRNA splicing Prp18-interacting factor SWELLMAP 1 -0.75 0.32 -0.35
34 AT1G09910 Rhamnogalacturonate lyase family protein -0.75 0.31 -0.3
35 AT1G64640 early nodulin-like protein 8 AtENODL8, early nodulin-like
protein 8		 0.75 0.33 -0.31
36 AT3G05210 nucleotide repair protein, putative ERCC1, UV REPAIR DEFICIENT 7 -0.74 0.32 -0.31
37 AT3G01340 Transducin/WD40 repeat-like superfamily protein 0.74 0.32 -0.3
38 AT4G02020 SET domain-containing protein EZA1, SET DOMAIN-CONTAINING
PROTEIN 10, SWINGER		 -0.74 0.31 -0.3
39 AT1G08780 ABI3-interacting protein 3 ABI3-interacting protein 3,
PREFOLDIN 4		 0.74 0.32 -0.31
40 AT1G21480 Exostosin family protein 0.74 0.29 -0.34
41 AT5G24350 CONTAINS InterPro DOMAIN/s: Secretory pathway Sec39
(InterPro:IPR013244); Has 1807 Blast hits to 1807 proteins
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes -
339 (source: NCBI BLink).		 -0.73 0.33 -0.32
42 AT5G05010 clathrin adaptor complexes medium subunit family protein 0.73 0.31 -0.31
43 AT1G71750 Hypoxanthine-guanine phosphoribosyltransferase Hypoxanthine-guanine
phosphoribosyltransferase		 0.73 0.3 -0.31
44 AT2G34610 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G30190.1); Has 342 Blast hits
to 279 proteins in 74 species: Archae - 0; Bacteria - 7;
Metazoa - 76; Fungi - 18; Plants - 51; Viruses - 0; Other
Eukaryotes - 190 (source: NCBI BLink).		 -0.73 0.33 -0.31
45 AT1G72830 nuclear factor Y, subunit A3 ATHAP2C, HAP2C, nuclear factor Y,
subunit A3		 -0.72 0.31 -0.32
46 AT2G36960 TSL-kinase interacting protein 1 TSL-kinase interacting protein 1 -0.72 0.31 -0.28
47 AT1G23490 ADP-ribosylation factor 1 ADP-ribosylation factor 1,
ADP-RIBOSYLATION FACTOR,
ADP-ribosylation factor 1,
ADP-RIBOSYLATION FACTOR 1A		 0.72 0.3 -0.31
48 AT1G57620 emp24/gp25L/p24 family/GOLD family protein 0.72 0.32 -0.32
49 AT2G38320 TRICHOME BIREFRINGENCE-LIKE 34 TRICHOME BIREFRINGENCE-LIKE 34 0.71 0.31 -0.29
50 AT2G22910 N-acetyl-l-glutamate synthase 1 N-acetyl-l-glutamate synthase 1 -0.71 0.31 -0.31
51 AT2G18370 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.71 0.3 -0.32
52 AT5G11000 Plant protein of unknown function (DUF868) 0.71 0.32 -0.32
53 AT5G51180 alpha/beta-Hydrolases superfamily protein 0.71 0.33 -0.32
54 AT1G74840 Homeodomain-like superfamily protein 0.71 0.33 -0.32
55 AT5G24010 Protein kinase superfamily protein -0.71 0.3 -0.31
56 AT2G44740 cyclin p4;1 cyclin p4;1 0.71 0.29 -0.31
57 AT1G61810 beta-glucosidase 45 beta-glucosidase 45 -0.7 0.34 -0.3
58 AT3G27670 ARM repeat superfamily protein RESURRECTION1 -0.7 0.32 -0.32
59 AT1G02740 MRG family protein 0.7 0.32 -0.3
60 AT3G06810 acyl-CoA dehydrogenase-related IBA-RESPONSE 3 -0.7 0.31 -0.32
61 AT1G09420 glucose-6-phosphate dehydrogenase 4 glucose-6-phosphate dehydrogenase
4		 -0.7 0.31 -0.32
62 AT2G17975 zinc finger (Ran-binding) family protein -0.7 0.3 -0.32
63 AT3G55730 myb domain protein 109 myb domain protein 109, myb domain
protein 109		 0.7 0.32 -0.3
64 AT4G00300 fringe-related protein 0.7 0.34 -0.32
65 AT5G63560 HXXXD-type acyl-transferase family protein -0.7 0.33 -0.3
66 AT5G46340 O-acetyltransferase family protein REDUCED WALL ACETYLATION 1 -0.7 0.32 -0.32
67 AT1G78030 unknown protein; BEST Arabidopsis thaliana protein match
is: Protein of unknown function (duplicated DUF1399)
(TAIR:AT4G37900.1); Has 6 Blast hits to 6 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 6; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.7 0.32 -0.3
68 AT1G61170 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 19 plant
structures; EXPRESSED DURING: 12 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT1G11125.1); Has 54 Blast hits to 54 proteins in 15
species: Archae - 0; Bacteria - 0; Metazoa - 17; Fungi - 0;
Plants - 34; Viruses - 1; Other Eukaryotes - 2 (source:
NCBI BLink).		 0.7 0.29 -0.31
69 AT3G15710 Peptidase S24/S26A/S26B/S26C family protein 0.7 0.3 -0.32
70 AT2G20810 galacturonosyltransferase 10 galacturonosyltransferase 10, LGT4 0.69 0.3 -0.31
71 AT3G61640 arabinogalactan protein 20 arabinogalactan protein 20,
Arabinogalactan protein 20		 0.69 0.31 -0.31
72 AT1G23520 Domain of unknown function (DUF220) -0.69 0.31 -0.33
73 AT1G33240 GT-2-like 1 GT2-LIKE 1, GT-2-like 1 0.69 0.29 -0.31
74 AT3G58550 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.69 0.32 -0.33
75 AT2G30620 winged-helix DNA-binding transcription factor family
protein		 0.69 0.35 -0.31
76 AT4G04740 calcium-dependent protein kinase 23 ATCPK23, calcium-dependent protein
kinase 23		 -0.69 0.34 -0.33
77 AT1G73250 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase 1 ACTIVATING TRANSCRIPTION FACTOR 5,
GDP-4-keto-6-deoxymannose-3,5-epim
erase-4-reductase 1		 0.69 0.31 -0.3
78 AT2G36670 Eukaryotic aspartyl protease family protein -0.69 0.34 -0.34
79 AT3G03240 alpha/beta-Hydrolases superfamily protein -0.69 0.31 -0.32
80 AT1G15370 SNARE-like superfamily protein 0.69 0.31 -0.33
81 AT5G48870 Small nuclear ribonucleoprotein family protein SUPERSENSITIVE TO ABA AND DROUGHT
1		 0.69 0.31 -0.33
82 AT1G30825 Arp2/3 complex, 34 kD subunit p34-Arc ACTIN-RELATED PROTEIN C2A,
DISTORTED TRICHOMES 2		 0.68 0.31 -0.29
83 AT1G12310 Calcium-binding EF-hand family protein 0.68 0.31 -0.3
84 AT1G68000 phosphatidylinositol synthase 1 PHOSPHATIDYLINOSITOL SYNTHASE,
phosphatidylinositol synthase 1,
phosphatidylinositol synthase 1		 0.68 0.33 -0.32
85 AT5G43840 heat shock transcription factor A6A heat shock transcription factor
A6A, heat shock transcription
factor A6A		 -0.68 0.29 -0.3
86 AT3G05490 ralf-like 22 ralf-like 22 0.68 0.31 -0.32
87 AT1G66740 ASF1 like histone chaperone ANTI- SILENCING FUNCTION 1A,
AtSP7, SGA2, SP7		 0.68 0.32 -0.34
88 AT2G28290 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 CHROMATIN REMODELING COMPLEX
SUBUNIT R 3, SPLAYED		 -0.68 0.3 -0.31
89 AT2G20980 minichromosome maintenance 10 minichromosome maintenance 10 0.68 0.29 -0.3
90 AT1G23230 CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med23
(InterPro:IPR021629); Has 187 Blast hits to 184 proteins in
67 species: Archae - 0; Bacteria - 0; Metazoa - 135; Fungi
- 0; Plants - 43; Viruses - 0; Other Eukaryotes - 9
(source: NCBI BLink).		 -0.68 0.31 -0.33
91 AT1G24010 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 -0.68 0.3 -0.3
92 AT3G01320 SIN3-like 1 SIN3-like 1 -0.68 0.33 -0.33
93 AT1G01540 Protein kinase superfamily protein 0.68 0.31 -0.29
94 AT4G23980 auxin response factor 9 auxin response factor 9 -0.68 0.31 -0.34
95 AT2G47810 nuclear factor Y, subunit B5 nuclear factor Y, subunit B5 -0.68 0.33 -0.32
96 AT5G10260 RAB GTPase homolog H1E RAB GTPase homolog H1E, RAB GTPase
homolog H1E		 0.68 0.33 -0.32
97 AT2G37650 GRAS family transcription factor -0.68 0.31 -0.31
98 AT2G43260 F-box and associated interaction domains-containing protein 0.67 0.31 -0.32
99 AT4G20780 calmodulin like 42 calmodulin like 42 0.67 0.31 -0.32
100 AT5G05840 Protein of unknown function (DUF620) 0.67 0.3 -0.33
101 AT4G22300 carboxylesterases SUPPRESSOR OF AVRBST-ELICITED
RESISTANCE 1		 0.67 0.31 -0.35
102 AT1G49230 RING/U-box superfamily protein 0.67 0.32 -0.31
103 AT3G13065 STRUBBELIG-receptor family 4 STRUBBELIG-receptor family 4 -0.67 0.31 -0.32
104 AT1G36510 Nucleic acid-binding proteins superfamily -0.67 0.31 -0.3
105 AT2G21880 RAB GTPase homolog 7A RAB GTPase homolog 7A, ARABIDOPSIS
RAB GTPASE HOMOLOG G2, RAB GTPase
homolog 7A		 0.67 0.29 -0.33
106 AT5G14240 Thioredoxin superfamily protein 0.67 0.32 -0.32
107 AT4G16515 Encodes a root meristem growth factor (RGF). Belongs to a
family of functionally redundant homologous peptides that
are secreted, tyrosine-sulfated, and expressed mainly in
the stem cell area and the innermost layer of central
columella cells. RGFs are required for maintenance of the
root stem cell niche and transit amplifying cell
proliferation. Members of this family include: At5g60810
(RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350
(RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240
(RGF7), At2g03830 (RGF8) and At5g64770 (RGF9).		 root meristem growth factor 6 0.67 0.32 -0.33
108 AT3G20620 F-box family protein-related -0.67 0.3 -0.32
109 AT3G13360 WPP domain interacting protein 3 WPP domain interacting protein 3 0.67 0.32 -0.33
110 AT1G15750 Transducin family protein / WD-40 repeat family protein TOPLESS, WUS-INTERACTING PROTEIN 1 -0.67 0.31 -0.32
111 AT4G32620 Enhancer of polycomb-like transcription factor protein -0.66 0.3 -0.32
112 AT3G20120 cytochrome P450, family 705, subfamily A, polypeptide 21 cytochrome P450, family 705,
subfamily A, polypeptide 21		 -0.66 0.32 -0.32
113 AT1G58250 Golgi-body localisation protein domain ;RNA pol II promoter
Fmp27 protein domain		 SABRE -0.66 0.29 -0.3
114 AT3G46220 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF2042 (InterPro:IPR018611); Has 559
Blast hits to 533 proteins in 154 species: Archae - 3;
Bacteria - 32; Metazoa - 305; Fungi - 42; Plants - 50;
Viruses - 3; Other Eukaryotes - 124 (source: NCBI BLink).		 -0.66 0.33 -0.3
115 AT2G21820 unknown protein; Has 45 Blast hits to 45 proteins in 13
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.66 0.32 -0.3
116 AT3G54010 FKBP-type peptidyl-prolyl cis-trans isomerase family
protein		 DEI1, PASTICCINO 1 -0.66 0.33 -0.31
117 AT2G17845 NAD(P)-binding Rossmann-fold superfamily protein -0.66 0.33 -0.32
118 AT2G01130 DEA(D/H)-box RNA helicase family protein -0.65 0.31 -0.3
119 AT4G04150 transposable element gene -0.65 0.33 -0.32
120 AT4G39420 unknown protein; Has 46 Blast hits to 40 proteins in 10
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 44; Viruses - 0; Other Eukaryotes - 2 (source:
NCBI BLink).		 -0.65 0.31 -0.34
121 AT5G13690 alpha-N-acetylglucosaminidase family / NAGLU family CYCLOPS 1,
N-ACETYL-GLUCOSAMINIDASE		 -0.65 0.34 -0.31
122 AT1G79950 RAD3-like DNA-binding helicase protein -0.65 0.32 -0.3
123 AT2G27150 abscisic aldehyde oxidase 3 abscisic aldehyde oxidase 3,
Aldehyde oxidase delta,
Arabidopsis thaliana aldehyde
oxidase 3, AtAAO3		 -0.65 0.32 -0.33
124 AT5G25560 CHY-type/CTCHY-type/RING-type Zinc finger protein -0.64 0.31 -0.32
125 AT5G55310 DNA topoisomerase 1 beta TOPOISOMERASE 1, DNA topoisomerase
1 beta		 -0.64 0.31 -0.32
126 AT1G17590 nuclear factor Y, subunit A8 nuclear factor Y, subunit A8 -0.64 0.33 -0.3
127 AT1G54360 TBP-ASSOCIATED FACTOR 6B TBP-ASSOCIATED FACTOR 6B,
TBP-ASSOCIATED FACTOR 6B1,
TBP-ASSOCIATED FACTOR 6B2,
TBP-associated factor 6B4		 -0.64 0.3 -0.31
128 AT3G57980 DNA-binding bromodomain-containing protein -0.63 0.3 -0.29
129 AT3G12810 SNF2 domain-containing protein / helicase domain-containing
protein		 chr13, PHOTOPERIOD-INDEPENDENT
EARLY FLOWERING 1, SRCAP		 -0.63 0.3 -0.33
130 AT3G24310 myb domain protein 305 MYB DOMAIN PROTEIN 71, myb domain
protein 305		 -0.63 0.31 -0.32
131 AT1G45160 Protein kinase superfamily protein -0.63 0.33 -0.3
132 AT3G62730 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 13 plant structures;
EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis,
LP.02 two leaves visible, petal differentiation and
expansion stage; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G47980.1); Has 172 Blast hits
to 172 proteins in 41 species: Archae - 0; Bacteria - 73;
Metazoa - 0; Fungi - 0; Plants - 99; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.63 0.33 -0.31
133 AT3G22170 far-red elongated hypocotyls 3 far-red elongated hypocotyls 3 -0.63 0.33 -0.3
134 AT4G21326 subtilase 3.12 subtilase 3.12, subtilase 3.12 -0.62 0.31 -0.3
135 AT1G69310 WRKY DNA-binding protein 57 ATWRKY57, WRKY DNA-binding protein
57		 -0.62 0.32 -0.31
136 AT1G21430 Flavin-binding monooxygenase family protein YUC11 -0.62 0.33 -0.29
137 AT2G18360 alpha/beta-Hydrolases superfamily protein -0.62 0.3 -0.31
138 ATMG00400 hypothetical protein ORF157 -0.62 0.33 -0.31
139 AT2G22530 Alkaline-phosphatase-like family protein -0.62 0.31 -0.32
140 AT2G43420 3-beta hydroxysteroid dehydrogenase/isomerase family
protein		 -0.62 0.3 -0.32