AT5G24840 : -
Query Information
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AGICode AT5G24840
Description tRNA (guanine-N-7) methyltransferase
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G24840 tRNA (guanine-N-7) methyltransferase 1 0.31 -0.32
2 AT3G11400 eukaryotic translation initiation factor 3G1 ATEIF3G1, eukaryotic translation
initiation factor 3G1		 0.85 0.3 -0.33
3 AT2G44860 Ribosomal protein L24e family protein 0.84 0.3 -0.31
4 AT5G10360 Ribosomal protein S6e embryo defective 3010, Ribosomal
protein small subunit 6b		 0.84 0.31 -0.33
5 AT2G26060 Transducin/WD40 repeat-like superfamily protein embryo defective 1345 0.84 0.33 -0.33
6 AT5G23900 Ribosomal protein L13e family protein 0.83 0.3 -0.31
7 AT5G03300 adenosine kinase 2 adenosine kinase 2 0.83 0.32 -0.29
8 AT5G57290 60S acidic ribosomal protein family 0.82 0.33 -0.31
9 AT2G39990 eukaryotic translation initiation factor 2 Arabidopsis thaliana eukaryotic
translation initiation factor 3
subunit F, eukaryotic translation
initiation factor 2, eukaryotic
translation initiation factor 3
subunit F		 0.81 0.32 -0.32
10 AT4G02230 Ribosomal protein L19e family protein 0.81 0.3 -0.32
11 AT5G06360 Ribosomal protein S8e family protein 0.8 0.33 -0.33
12 AT3G25940 TFIIB zinc-binding protein 0.8 0.33 -0.29
13 AT1G69620 ribosomal protein L34 ribosomal protein L34 0.8 0.31 -0.34
14 AT1G71430 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; Has 64
Blast hits to 64 proteins in 28 species: Archae - 0;
Bacteria - 0; Metazoa - 14; Fungi - 6; Plants - 42; Viruses
- 0; Other Eukaryotes - 2 (source: NCBI BLink).		 0.8 0.3 -0.31
15 AT4G31580 serine/arginine-rich 22 RS-containing zinc finger protein
22, RS-containing zinc finger
protein 22, RS-CONTAINING ZINC
FINGER PROTEIN 22,
serine/arginine-rich 22, SRZ22		 0.8 0.3 -0.3
16 AT2G45860 unknown protein; Has 32 Blast hits to 32 proteins in 13
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.8 0.32 -0.31
17 AT2G19540 Transducin family protein / WD-40 repeat family protein 0.79 0.31 -0.34
18 AT5G20920 eukaryotic translation initiation factor 2 beta subunit eukaryotic translation initiation
factor 2 beta subunit, embryo
defective 1401		 0.78 0.29 -0.31
19 AT3G52590 ubiquitin extension protein 1 EMBRYO DEFECTIVE 2167,
EARLY-RESPONSIVE TO DEHYDRATION
16, HAPLESS 4, ubiquitin extension
protein 1		 0.77 0.3 -0.31
20 AT4G39300 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 0.77 0.31 -0.31
21 AT2G44510 CDK inhibitor P21 binding protein 0.77 0.32 -0.32
22 AT4G16265 RNA polymerases M/15 Kd subunit NRPB9B, NRPD9B, NRPE9B 0.76 0.32 -0.3
23 AT1G10590 Nucleic acid-binding, OB-fold-like protein 0.76 0.33 -0.31
24 AT5G02610 Ribosomal L29 family protein 0.76 0.31 -0.31
25 AT2G47640 Small nuclear ribonucleoprotein family protein 0.76 0.33 -0.33
26 AT2G46230 PIN domain-like family protein 0.76 0.32 -0.32
27 AT4G36020 cold shock domain protein 1 cold shock domain protein 1 0.76 0.31 -0.3
28 AT1G76300 snRNP core protein SMD3 snRNP core protein SMD3 0.76 0.31 -0.29
29 AT5G02450 Ribosomal protein L36e family protein 0.76 0.33 -0.34
30 AT1G22370 UDP-glucosyl transferase 85A5 UDP-glucosyl transferase 85A5,
UDP-glucosyl transferase 85A5		 -0.75 0.31 -0.33
31 AT5G41600 VIRB2-interacting protein 3 VIRB2-interacting protein 3,
Reticulan like protein B4		 0.75 0.34 -0.32
32 AT2G04520 Nucleic acid-binding, OB-fold-like protein 0.75 0.33 -0.33
33 AT2G40420 Transmembrane amino acid transporter family protein -0.74 0.3 -0.3
34 AT1G03380 homolog of yeast autophagy 18 (ATG18) G homolog of yeast autophagy 18
(ATG18) G, homolog of yeast
autophagy 18 (ATG18) G		 -0.74 0.32 -0.3
35 AT4G29830 Transducin/WD40 repeat-like superfamily protein vernalization independence 3 0.74 0.32 -0.32
36 AT4G19160 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.74 0.31 -0.33
37 AT3G02220 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF2039 (InterPro:IPR019351); Has 215
Blast hits to 215 proteins in 94 species: Archae - 2;
Bacteria - 2; Metazoa - 125; Fungi - 4; Plants - 38;
Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).		 0.74 0.33 -0.32
38 AT4G29390 Ribosomal protein S30 family protein 0.74 0.31 -0.33
39 AT1G61990 Mitochondrial transcription termination factor family
protein		 0.74 0.28 -0.31
40 AT1G13690 ATPase E1 ATPase E1 0.74 0.32 -0.32
41 AT2G40780 Nucleic acid-binding, OB-fold-like protein 0.74 0.34 -0.29
42 AT1G49410 translocase of the outer mitochondrial membrane 6 translocase of the outer
mitochondrial membrane 6		 0.74 0.32 -0.33
43 AT5G06660 Protein of unknown function DUF106, transmembrane 0.74 0.33 -0.32
44 AT3G26580 Tetratricopeptide repeat (TPR)-like superfamily protein -0.73 0.31 -0.29
45 AT5G64900 precursor of peptide 1 ARABIDOPSIS THALIANA PEPTIDE 1,
PEPTIDE 1, precursor of peptide 1		 -0.72 0.34 -0.32
46 AT1G51340 MATE efflux family protein -0.72 0.32 -0.31
47 AT1G26670 Vesicle transport v-SNARE family protein ATVTI12, VESICAL TRANSPORT V-SNARE
12, VTI1B		 -0.72 0.33 -0.31
48 AT5G27950 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.72 0.31 -0.3
49 AT2G35050 Protein kinase superfamily protein with
octicosapeptide/Phox/Bem1p domain		 -0.71 0.33 -0.3
50 AT5G22850 Eukaryotic aspartyl protease family protein -0.7 0.31 -0.32
51 AT4G32850 nuclear poly(a) polymerase nuclear poly(a) polymerase,
poly(A) polymerase IV		 -0.7 0.36 -0.3
52 AT1G45160 Protein kinase superfamily protein -0.69 0.32 -0.31
53 AT1G14790 RNA-dependent RNA polymerase 1 ATRDRP1, RNA-dependent RNA
polymerase 1		 -0.69 0.31 -0.32
54 AT3G02300 Regulator of chromosome condensation (RCC1) family protein -0.68 0.32 -0.34
55 AT3G25740 methionine aminopeptidase 1C methionine aminopeptidase 1C,
METHIONINE AMINOPEPTIDASE 1C		 -0.68 0.32 -0.31
56 AT3G57300 INO80 ortholog INO80 ORTHOLOG, INO80 ortholog -0.68 0.3 -0.29
57 AT3G54290 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
N-terminal protein myristoylation; LOCATED IN: chloroplast;
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: Haemerythrin/HHE
cation-binding motif (InterPro:IPR012312); Has 59 Blast
hits to 59 proteins in 14 species: Archae - 0; Bacteria -
2; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other
Eukaryotes - 1 (source: NCBI BLink).		 -0.68 0.34 -0.32
58 AT3G10420 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 SEEDLING PLASTID DEVELOPMENT 1 -0.67 0.31 -0.31
59 AT5G13690 alpha-N-acetylglucosaminidase family / NAGLU family CYCLOPS 1,
N-ACETYL-GLUCOSAMINIDASE		 -0.67 0.3 -0.3
60 AT2G22310 ubiquitin-specific protease 4 ubiquitin-specific protease 4,
ubiquitin-specific protease 4		 -0.66 0.32 -0.32
61 AT4G00800 transducin family protein / WD-40 repeat family protein SETH5 -0.66 0.31 -0.32
62 AT1G76460 RNA-binding (RRM/RBD/RNP motifs) family protein -0.65 0.31 -0.33
63 AT2G28290 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 CHROMATIN REMODELING COMPLEX
SUBUNIT R 3, SPLAYED		 -0.65 0.33 -0.32
64 AT4G29790 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G19390.1); Has 538 Blast hits
to 357 proteins in 124 species: Archae - 0; Bacteria - 74;
Metazoa - 109; Fungi - 58; Plants - 105; Viruses - 2; Other
Eukaryotes - 190 (source: NCBI BLink).		 -0.64 0.33 -0.31
65 AT3G50220 Protein of unknown function (DUF579) IRREGULAR XYLEM 15 -0.64 0.31 -0.31
66 AT5G25520 SPOC domain / Transcription elongation factor S-II protein -0.64 0.31 -0.31
67 AT3G08020 PHD finger family protein -0.64 0.32 -0.32
68 AT4G26180 Mitochondrial substrate carrier family protein -0.64 0.32 -0.32
69 AT2G03140 alpha/beta-Hydrolases superfamily protein -0.63 0.33 -0.3
70 AT3G23590 REF4-related 1 MED33A, REF4-related 1 -0.63 0.31 -0.3
71 AT4G00550 digalactosyl diacylglycerol deficient 2 digalactosyl diacylglycerol
deficient 2		 -0.63 0.33 -0.32
72 AT1G60270 beta glucosidase 6 beta glucosidase 6 -0.63 0.31 -0.32
73 AT3G59300 Pentatricopeptide repeat (PPR) superfamily protein -0.63 0.31 -0.32
74 AT4G33700 CBS domain-containing protein with a domain of unknown
function (DUF21)		 -0.63 0.33 -0.32
75 AT1G54360 TBP-ASSOCIATED FACTOR 6B TBP-ASSOCIATED FACTOR 6B,
TBP-ASSOCIATED FACTOR 6B1,
TBP-ASSOCIATED FACTOR 6B2,
TBP-associated factor 6B4		 -0.63 0.32 -0.32
76 AT1G08190 vacuolar protein sorting 41 ATVAM2, VACUOLAR PROTEIN SORTING
41, VAM2, vacuolar protein sorting
41, ZIGZAG SUPPRESSOR 2		 -0.63 0.31 -0.35
77 ATCG00560 photosystem II reaction center protein L photosystem II reaction center
protein L		 -0.62 0.31 -0.32
78 AT5G07890 myosin heavy chain-related -0.62 0.31 -0.33
79 AT5G02310 proteolysis 6 proteolysis 6 -0.62 0.3 -0.3
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
80 C0260 Tyrosine L-(-)-Tyrosine L-Tyrosine tyrosine biosynthesis II,
4-hydroxyphenylpyruvate biosynthesis,
tyrosine degradation I,
tyrosine biosynthesis I,
tRNA charging,
hydroxycinnamic acid tyramine amides biosynthesis 		-0.77 0.32 -0.33 C0260
81 C0257 Tryptophan L-Tryptophan L-Tryptophan glucosinolate biosynthesis from tryptophan,
IAA biosynthesis I,
tryptophan biosynthesis,
camalexin biosynthesis,
tRNA charging 		-0.68 0.33 -0.29 C0257
82 C0053 ADP - ADP phosphatidylcholine biosynthesis I,
mannitol degradation II,
lipid IVA biosynthesis,
stachyose degradation,
Rubisco shunt,
copper transport II,
glycerol degradation IV,
chorismate biosynthesis,
folate polyglutamylation II,
galactose degradation III,
D-myo-inositol (1,4,5)-trisphosphate biosynthesis,
UDP-L-arabinose biosynthesis II (from L-arabinose),
cadmium transport I,
folate polyglutamylation,
coenzyme A biosynthesis,
sulfate activation for sulfonation,
1,4-dihydroxy-2-naphthoate biosynthesis II (plants),
pyrimidine deoxyribonucleotides de novo biosynthesis I,
galactose degradation II,
inosine-5'-phosphate biosynthesis II,
ribose degradation,
acetyl-CoA biosynthesis (from citrate),
inositol pyrophosphates biosynthesis,
fatty acid biosynthesis initiation I,
xylose degradation I,
adenine and adenosine salvage VI,
TCA cycle variation III (eukaryotic),
tetrahydrofolate biosynthesis II,
phosphatidylethanolamine biosynthesis II,
pyridoxal 5'-phosphate salvage pathway,
citrulline biosynthesis,
trans-zeatin biosynthesis,
glutamine biosynthesis I,
arginine biosynthesis II (acetyl cycle),
L-Ndelta-acetylornithine biosynthesis,
mevalonate pathway I,
methionine biosynthesis II,
trehalose degradation II (trehalase),
citrulline degradation,
methionine salvage pathway,
TCA cycle variation V (plant),
chlorophyllide a biosynthesis I,
starch degradation I,
methylerythritol phosphate pathway,
pyridine nucleotide cycling (plants),
ceramide degradation,
biotin-carboxyl carrier protein assembly,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
UDP-D-galacturonate biosynthesis II (from D-galacturonate),
asparagine biosynthesis III (tRNA-dependent),
superpathway of glyoxylate cycle and fatty acid degradation,
NAD/NADH phosphorylation and dephosphorylation,
1D-myo-inositol hexakisphosphate biosynthesis V (from Ins(1,3,4)P3),
galactose degradation I (Leloir pathway),
uridine-5'-phosphate biosynthesis,
lipid-dependent phytate biosynthesis II (via Ins(1,3,4)P3),
sucrose degradation III,
lysine biosynthesis VI,
sphingolipid biosynthesis (plants),
choline biosynthesis I,
GDP-glucose biosynthesis,
photorespiration,
gamma-glutamyl cycle (plant pathway),
5-aminoimidazole ribonucleotide biosynthesis I,
gamma-glutamyl cycle,
thiamine biosynthesis II,
proline biosynthesis III,
glutathione biosynthesis,
folate transformations II,
ornithine biosynthesis,
diphthamide biosynthesis,
S-methyl-5'-thioadenosine degradation I,
starch biosynthesis,
arginine biosynthesis I,
homoserine biosynthesis,
flavin biosynthesis I (bacteria and plants),
sucrose biosynthesis I,
leucine degradation I,
glycolysis I,
pyrimidine ribonucleotides interconversion,
1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza),
glycolysis IV (plant cytosol),
Calvin-Benson-Bassham cycle,
UDP-D-glucuronate biosynthesis (from myo-inositol),
guanine and guanosine salvage III,
glutamine biosynthesis III,
L-glutamine biosynthesis II (tRNA-dependent),
GDP-L-fucose biosynthesis II (from L-fucose),
nitrate reduction II (assimilatory),
ammonia assimilation cycle II,
gluconeogenesis I,
threonine biosynthesis from homoserine,
mannose degradation,
urea cycle,
lipid-dependent phytate biosynthesis I (via Ins(1,4,5)P3),
biotin biosynthesis II 		-0.67 0.43 -0.41 C0053
83 C0026 2-Hydroxyisobutyric acid - - β oxidation -0.66 0.44 -0.47
84 C0032 3-Phosphoglyceric acid 3-Phospho-(R)-glyceric acid 3-Phosphoglycerate glycolysis I,
gluconeogenesis I,
Calvin-Benson-Bassham cycle,
sucrose biosynthesis I,
serine biosynthesis,
photorespiration,
Rubisco shunt,
glycolysis IV (plant cytosol) 		-0.66 0.46 -0.46 C0032