AT5G52480 : -
Query Information
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AGICode AT5G52480
Description RNI-like superfamily protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G52480 RNI-like superfamily protein 1 0.32 -0.3
2 AT4G21090 MITOCHONDRIAL FERREDOXIN 2 ARABIDOPSIS MITOCHONDRIAL
FERREDOXIN 2, MITOCHONDRIAL
FERREDOXIN 2		 -0.68 0.32 -0.31
3 AT5G49190 sucrose synthase 2 ATSUS2, SUCROSE SYNTHASE FROM
ARABIDOPSIS, sucrose synthase 2		 0.62 0.32 -0.32
4 AT3G07610 Transcription factor jumonji (jmjC) domain-containing
protein		 increase in bonsai methylation 1 0.62 0.31 -0.31
5 AT5G04290 kow domain-containing transcription factor 1 kow domain-containing
transcription factor 1, SPT5-LIKE		 0.6 0.32 -0.31
6 AT5G61920 unknown protein; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures;
EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal
differentiation and expansion stage, E expanded cotyledon
stage, D bilateral stage; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G67170.1); Has 1807
Blast hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).		 0.59 0.33 -0.31
7 AT5G28490 Protein of unknown function (DUF640) LIGHT-DEPENDENT SHORT HYPOCOTYLS
1, ORGAN BOUNDARY 2		 0.57 0.31 -0.31
8 AT3G50160 Plant protein of unknown function (DUF247) -0.56 0.32 -0.31
9 AT1G16290 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast,
vacuole; EXPRESSED IN: 19 plant structures; EXPRESSED
DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Lytic
transglycosylase-like, catalytic (InterPro:IPR008258); Has
171 Blast hits to 155 proteins in 40 species: Archae - 0;
Bacteria - 54; Metazoa - 0; Fungi - 0; Plants - 55; Viruses
- 0; Other Eukaryotes - 62 (source: NCBI BLink).		 -0.55 0.3 -0.33
10 AT4G21100 damaged DNA binding protein 1B damaged DNA binding protein 1B -0.55 0.32 -0.31
11 AT5G58780 Undecaprenyl pyrophosphate synthetase family protein 0.55 0.31 -0.31
12 AT4G04170 transposable element gene -0.55 0.29 -0.32
13 AT2G36040 transposable element gene -0.54 0.31 -0.32
14 AT5G53810 O-methyltransferase family protein -0.54 0.31 -0.33
15 AT2G06310 transposable element gene -0.54 0.34 -0.31
16 AT2G21060 glycine-rich protein 2B COLD SHOCK DOMAIN PROTEIN 4,
glycine-rich protein 2B,
glycine-rich protein 2B		 0.54 0.31 -0.3
17 AT1G63470 AT hook motif DNA-binding family protein 0.53 0.32 -0.33
18 AT3G42830 RING/U-box superfamily protein -0.52 0.3 -0.33
19 AT2G39280 Ypt/Rab-GAP domain of gyp1p superfamily protein -0.52 0.31 -0.3
20 AT4G07360 transposable element gene -0.52 0.33 -0.32
21 AT4G12220 BEST Arabidopsis thaliana protein match is: RING/U-box
superfamily protein (TAIR:AT4G12210.1); Has 24 Blast hits
to 21 proteins in 2 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.52 0.31 -0.31
22 AT2G39550 Prenyltransferase family protein GERANYLGERANYLTRANSFERASE-I BETA
SUBUNIT, GGB, PGGT-I		 -0.52 0.31 -0.3
23 AT1G43840 transposable element gene 0.52 0.29 -0.31
24 AT3G32917 transposable element gene -0.52 0.31 -0.34
25 AT3G23450 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 14 plant structures;
EXPRESSED DURING: 8 growth stages; Has 694543 Blast hits to
47111 proteins in 2535 species: Archae - 1794; Bacteria -
163056; Metazoa - 258989; Fungi - 49151; Plants - 70496;
Viruses - 8919; Other Eukaryotes - 142138 (source: NCBI
BLink).		 0.51 0.33 -0.3
26 ATMG00450 hypothetical protein ORF106B -0.51 0.31 -0.31
27 AT3G28150 TRICHOME BIREFRINGENCE-LIKE 22 ALTERED XYLOGLUCAN 4-LIKE,
TRICHOME BIREFRINGENCE-LIKE 22		 0.51 0.31 -0.3
28 AT2G02250 phloem protein 2-B2 phloem protein 2-B2, phloem
protein 2-B2		 -0.51 0.31 -0.3
29 AT1G57570 Mannose-binding lectin superfamily protein -0.5 0.34 -0.32
30 ATCG00220 photosystem II reaction center protein M photosystem II reaction center
protein M		 -0.5 0.33 -0.31
31 AT3G51940 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G03990.1); Has 215 Blast hits
to 164 proteins in 38 species: Archae - 0; Bacteria - 35;
Metazoa - 16; Fungi - 18; Plants - 121; Viruses - 0; Other
Eukaryotes - 25 (source: NCBI BLink).		 0.5 0.32 -0.31
32 AT1G12130 Flavin-binding monooxygenase family protein 0.5 0.31 -0.3
33 AT4G28900 transposable element gene -0.5 0.34 -0.31
34 AT2G31500 calcium-dependent protein kinase 24 calcium-dependent protein kinase
24		 -0.49 0.3 -0.29
35 AT2G18930 unknown protein; Has 3 Blast hits to 3 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.49 0.3 -0.33
36 AT1G21830 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF740 (InterPro:IPR008004); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT1G44608.1); Has 49 Blast hits to 49 proteins in 12
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.49 0.32 -0.31
37 AT5G56330 alpha carbonic anhydrase 8 alpha carbonic anhydrase 8, A.
THALIANA ALPHA CARBONIC ANHYDRASE
8		 -0.49 0.33 -0.32
38 AT2G26450 Plant invertase/pectin methylesterase inhibitor superfamily -0.48 0.3 -0.31
39 AT5G02720 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G53490.1); Has 47 Blast hits
to 47 proteins in 13 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.48 0.32 -0.31
40 AT2G23960 Class I glutamine amidotransferase-like superfamily protein -0.48 0.32 -0.32
41 AT4G15980 Plant invertase/pectin methylesterase inhibitor superfamily 0.48 0.29 -0.29
42 AT5G14870 cyclic nucleotide-gated channel 18 CYCLIC NUCLEOTIDE-GATED CHANNEL
18, cyclic nucleotide-gated
channel 18		 0.48 0.34 -0.3
43 AT3G42300 transposable element gene -0.47 0.31 -0.34
44 AT1G21320 nucleotide binding;nucleic acid binding -0.47 0.3 -0.34
45 AT5G35300 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.47 0.32 -0.33
46 AT1G30460 cleavage and polyadenylation specificity factor 30 ARABIDOPSIS THALIANA CLEAVAGE AND
POLYADENYLATION SPECIFICITY FACTOR
30, cleavage and polyadenylation
specificity factor 30		 0.47 0.34 -0.31
47 AT5G66060 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.47 0.33 -0.32
48 AT4G26340 F-box/RNI-like/FBD-like domains-containing protein -0.47 0.3 -0.32
49 AT2G35570 pseudogene, serpin (serine protease inhibitor) family,
similar to phloem serpin-1 (Cucurbita maxima) GI:9937311;
blastp match of 49% identity and 9.9e-85 P-value to
GP|26224736|gb|AAN76362.1||AY158152 serpin-like protein
{Citrus x paradisi}		 -0.46 0.31 -0.33
50 AT5G58520 Protein kinase superfamily protein 0.46 0.3 -0.32
51 AT2G30630 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.46 0.32 -0.32
52 AT1G57550 Low temperature and salt responsive protein family -0.46 0.33 -0.3
53 AT4G18180 Pectin lyase-like superfamily protein 0.46 0.32 -0.31
54 AT4G20250 unknown protein; Has 2 Blast hits to 2 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.45 0.32 -0.31
55 AT4G31150 endonuclease V family protein -0.45 0.31 -0.33
56 AT2G31050 Cupredoxin superfamily protein -0.45 0.31 -0.32
57 AT5G55680 glycine-rich protein 0.45 0.33 -0.31
58 AT5G57140 purple acid phosphatase 28 PURPLE ACID PHOSPHATASE 28, purple
acid phosphatase 28		 -0.45 0.34 -0.35
59 AT5G22875 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to
17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink).		 0.45 0.3 -0.32
60 AT4G04280 transposable element gene 0.44 0.31 -0.3
61 AT1G33080 MATE efflux family protein 0.43 0.32 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
62 C0159 MST_1505.6 - - - -0.73 0.42 -0.42
63 C0012 n-Eicosanoic acid - Arachidate fatty acid activation,
fatty acid ω-oxidation,
sporopollenin precursor biosynthesis,
acyl-ACP thioesterase pathway,
ceramide degradation,
fatty acid α-oxidation,
fatty acid ω-oxidation,
phospholipases,
triacylglycerol degradation 		0.69 0.46 -0.46 C0012
64 C0001 α-Linolenic acid - (9,12,15)-Linolenate traumatin and (Z)-3-hexen-1-yl acetate biosynthesis,
poly-hydroxy fatty acids biosynthesis,
jasmonic acid biosynthesis 		0.66 0.43 -0.43 C0001
65 C0162 MST_1588.3 - - - -0.65 0.43 -0.45
66 C0186 NAD - NAD+ ammonia assimilation cycle II,
aspartate degradation II,
adenosine nucleotides degradation I,
plant sterol biosynthesis II,
UDP-D-xylose and UDP-D-glucuronate biosynthesis,
NAD biosynthesis I (from aspartate),
ethanol degradation IV (peroxisomal),
abscisic acid biosynthesis,
palmitate biosynthesis II (bacteria and plants),
zeaxanthin biosynthesis,
sucrose degradation to ethanol and lactate (anaerobic),
glutamate degradation IV,
stearate biosynthesis II (plants),
guanosine nucleotides degradation II,
glutamate degradation I,
mannitol degradation II,
glycerol-3-phosphate shuttle,
2-ketoglutarate dehydrogenase complex,
arginine degradation I (arginase pathway),
aerobic respiration (alternative oxidase pathway),
branched-chain alpha-keto acid dehydrogenase complex,
4-aminobutyrate degradation IV,
glycolysis I,
glycine cleavage complex,
lysine degradation II,
fatty acid beta-oxidation II (core pathway),
nitrate reduction II (assimilatory),
TCA cycle variation V (plant),
leucine degradation I,
thiamine biosynthesis II,
acetaldehyde biosynthesis I,
sorbitol degradation I,
glutamine biosynthesis III,
aerobic respiration (cytochrome c),
ethanol degradation I,
ascorbate biosynthesis I (L-galactose pathway),
glycolysis IV (plant cytosol),
benzoate biosynthesis II (CoA-independent, non-beta-oxidative),
siroheme biosynthesis,
TCA cycle variation III (eukaryotic),
isoleucine degradation I,
pyridine nucleotide cycling (plants),
tyrosine biosynthesis I,
gluconeogenesis I,
glycine betaine biosynthesis III (plants),
traumatin and (Z)-3-hexen-1-yl acetate biosynthesis,
NAD/NADH phosphorylation and dephosphorylation,
guanosine nucleotides degradation I,
purine nucleotides de novo biosynthesis II,
acetyl-CoA biosynthesis (from pyruvate),
serine biosynthesis,
photorespiration,
histidine biosynthesis,
glyoxylate cycle,
jasmonic acid biosynthesis,
alanine degradation II (to D-lactate),
a ubiquinone + NADH + H+ -> a ubiquinol + NAD+,
putrescine degradation IV,
brassinosteroid biosynthesis III,
fatty acid elongation -- saturated,
pyruvate fermentation to ethanol II,
beta-alanine biosynthesis II,
4-hydroxybenzoate biosynthesis V,
plant sterol biosynthesis,
urate biosynthesis/inosine 5'-phosphate degradation,
phenylalanine degradation III,
glutamate biosynthesis IV,
leucine biosynthesis,
fatty acid alpha-oxidation,
a ubiquinone + NADH + H+ -> NAD+ + a ubiquinol,
Fe(III)-reduction and Fe(II) transport,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
phenylethanol biosynthesis,
pyruvate fermentation to lactate,
superpathway of glyoxylate cycle and fatty acid degradation,
fatty acid omega-oxidation,
galactose degradation III,
ethanol degradation II (cytosol),
sucrose biosynthesis I,
valine degradation I,
folate transformations II 		-0.63 0.45 -0.46 C0186
67 C0230 Rutin - - polyphenol biosynthesis 0.62 0.47 -0.45
68 C0060 Asparagine D,L-Asparagine L-Asparagine asparagine degradation I,
asparagine biosynthesis III (tRNA-dependent),
asparagine biosynthesis I,
tRNA charging,
cyanide detoxification II 		-0.48 0.31 -0.33 C0060
69 C0148 Methionine D,L-Methionine L-Methionine thiamine biosynthesis II,
S-adenosyl-L-methionine biosynthesis,
S-adenosyl-L-methionine cycle II,
tRNA charging,
methionine degradation II,
ethylene biosynthesis I (plants),
methionine degradation I (to homocysteine),
S-methylmethionine cycle,
methionine salvage pathway,
methionine biosynthesis II,
folate transformations II,
homomethionine biosynthesis,
lipoate biosynthesis and incorporation I,
S-methyl-5-thio-alpha-D-ribose 1-phosphate degradation 		0.46 0.32 -0.31 C0148