AT5G45500 : -
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AGICode AT5G45500
Description RNI-like superfamily protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G45500 RNI-like superfamily protein 1 0.33 -0.32
2 AT4G21100 damaged DNA binding protein 1B damaged DNA binding protein 1B -0.68 0.33 -0.33
3 AT1G63500 Protein kinase protein with tetratricopeptide repeat domain 0.67 0.32 -0.3
4 AT4G00955 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; EXPRESSED IN: 14 plant structures; EXPRESSED
DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s:
EGF-like (InterPro:IPR006210); BEST Arabidopsis thaliana
protein match is: Protein kinase superfamily protein
(TAIR:AT2G23450.1); Has 94 Blast hits to 88 proteins in 13
species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 0;
Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).
0.65 0.32 -0.31
5 AT5G03270 lysine decarboxylase family protein LONELY GUY 6 -0.65 0.33 -0.33
6 AT4G01920 Cysteine/Histidine-rich C1 domain family protein 0.63 0.32 -0.29
7 AT5G46740 ubiquitin-specific protease 21 ubiquitin-specific protease 21 -0.63 0.32 -0.31
8 AT1G49620 Cyclin-dependent kinase inhibitor family protein ICK5, ICN6, KIP-RELATED PROTEIN 7 -0.62 0.32 -0.3
9 AT5G46750 ARF-GAP domain 9 ARF-GAP domain 9 -0.61 0.31 -0.32
10 AT3G51070 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein
0.61 0.33 -0.31
11 AT5G28490 Protein of unknown function (DUF640) LIGHT-DEPENDENT SHORT HYPOCOTYLS
1, ORGAN BOUNDARY 2
0.6 0.34 -0.32
12 AT4G11840 phospholipase D gamma 3 phospholipase D gamma 3 0.6 0.32 -0.32
13 AT2G07170 ARM repeat superfamily protein -0.6 0.31 -0.3
14 AT4G31230 Protein kinase protein with adenine nucleotide alpha
hydrolases-like domain
-0.59 0.33 -0.31
15 AT5G19900 PRLI-interacting factor, putative 0.59 0.31 -0.31
16 AT4G21090 MITOCHONDRIAL FERREDOXIN 2 ARABIDOPSIS MITOCHONDRIAL
FERREDOXIN 2, MITOCHONDRIAL
FERREDOXIN 2
-0.59 0.31 -0.33
17 AT2G20595 highly expressed in the female gametophyte central cell
and expressed at low levels in the egg and synergids
0.58 0.33 -0.32
18 AT5G58940 calmodulin-binding receptor-like cytoplasmic kinase 1 calmodulin-binding receptor-like
cytoplasmic kinase 1
0.58 0.31 -0.33
19 AT2G17340 Uncharacterised conserved protein (UCP030210) -0.58 0.32 -0.3
20 AT4G12160 pseudogene, 40S ribosomal protein S9 (RPS9A), ribosomal
protein S9.e - slime mold,PIR1:R3DO24; blastp match of 56%
identity and 7.2e-09 P-value to SP|P17959|RS9_TRYBB
Probable 40S ribosomal protein S9. {Trypanosoma brucei
brucei}
0.58 0.33 -0.3
21 AT1G37057 transposable element gene 0.57 0.32 -0.3
22 AT5G66620 DA1-related protein 6 DA1-related protein 6 0.57 0.32 -0.33
23 AT3G45730 unknown protein; Has 3 Blast hits to 3 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).
0.56 0.31 -0.32
24 AT5G25120 ytochrome p450, family 71, subfamily B, polypeptide 11 ytochrome p450, family 71,
subfamily B, polypeptide 11
0.56 0.32 -0.33
25 AT3G50570 hydroxyproline-rich glycoprotein family protein 0.56 0.3 -0.32
26 AT4G39650 gamma-glutamyl transpeptidase 2 gamma-glutamyl transpeptidase 2 0.55 0.3 -0.3
27 AT2G35570 pseudogene, serpin (serine protease inhibitor) family,
similar to phloem serpin-1 (Cucurbita maxima) GI:9937311;
blastp match of 49% identity and 9.9e-85 P-value to
GP|26224736|gb|AAN76362.1||AY158152 serpin-like protein
{Citrus x paradisi}
-0.55 0.29 -0.31
28 AT4G24020 NIN like protein 7 NIN like protein 7 -0.55 0.3 -0.33
29 AT3G52810 purple acid phosphatase 21 PURPLE ACID PHOSPHATASE 21, purple
acid phosphatase 21
0.55 0.33 -0.33
30 AT2G04710 transposable element gene 0.54 0.32 -0.31
31 AT4G01930 Cysteine/Histidine-rich C1 domain family protein 0.54 0.32 -0.32
32 AT1G63670 Protein of unknown function (DUF3741) 0.54 0.31 -0.32
33 AT3G56120 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein
-0.54 0.33 -0.32
34 AT2G03740 late embryogenesis abundant domain-containing protein / LEA
domain-containing protein
0.54 0.29 -0.33
35 AT2G03770 P-loop containing nucleoside triphosphate hydrolases
superfamily protein
0.54 0.31 -0.35
36 AT3G44430 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; EXPRESSED IN: 20 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G41660.1); Has 6 Blast
hits to 6 proteins in 1 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).
0.54 0.33 -0.3
37 AT2G30480 unknown protein; Has 35333 Blast hits to 34131 proteins in
2444 species: Archae - 798; Bacteria - 22429; Metazoa -
974; Fungi - 991; Plants - 531; Viruses - 0; Other
Eukaryotes - 9610 (source: NCBI BLink).
0.53 0.33 -0.32
38 AT4G10460 transposable element gene 0.53 0.3 -0.32
39 AT4G26340 F-box/RNI-like/FBD-like domains-containing protein -0.53 0.31 -0.33
40 AT2G17620 Cyclin B2;1 Cyclin B2;1 -0.52 0.34 -0.3
41 AT5G60250 zinc finger (C3HC4-type RING finger) family protein 0.52 0.31 -0.3
42 AT5G18580 tonneau 2 (TON2) EMBRYO DEFECTIVE 40, FASS 1, FASS
2, FS1, GORDO, TONNEAU 2
-0.51 0.31 -0.32
43 AT2G19150 Pectin lyase-like superfamily protein -0.51 0.3 -0.32
44 AT3G50480 homolog of RPW8 4 homolog of RPW8 4 0.51 0.3 -0.3
45 AT4G00650 FRIGIDA-like protein FLOWERING LOCUS A, FRIGIDA 0.51 0.31 -0.29
46 AT4G35010 beta-galactosidase 11 beta-galactosidase 11 -0.51 0.31 -0.32
47 AT4G08190 P-loop containing nucleoside triphosphate hydrolases
superfamily protein
0.51 0.3 -0.34
48 AT3G18360 VQ motif-containing protein 0.51 0.31 -0.33
49 AT3G28150 TRICHOME BIREFRINGENCE-LIKE 22 ALTERED XYLOGLUCAN 4-LIKE,
TRICHOME BIREFRINGENCE-LIKE 22
0.51 0.32 -0.31
50 AT4G00960 Protein kinase superfamily protein 0.51 0.32 -0.32
51 AT3G30740 40S ribosomal protein S25 (RPS25C), pseudogene, similar to
GB:P46301 GI:1173234 40S RIBOSOMAL PROTEIN S25 from
(Lycopersicon esculentum); blastp match of 75% identity and
7.2e-09 P-value to SP|P46301|RS25_LYCES 40S ribosomal
protein S25. (Tomato) {Lycopersicon esculentum}
-0.51 0.31 -0.31
52 AT3G61040 cytochrome P450, family 76, subfamily C, polypeptide 7 cytochrome P450, family 76,
subfamily C, polypeptide 7
0.51 0.31 -0.31
53 AT5G02200 far-red-elongated hypocotyl1-like far-red-elongated hypocotyl1-like 0.51 0.31 -0.31
54 AT2G32780 ubiquitin-specific protease 1 ATUBP1, ubiquitin-specific
protease 1
-0.51 0.31 -0.29
55 AT5G64610 histone acetyltransferase of the MYST family 1 histone acetyltransferase of the
MYST family 1
-0.51 0.32 -0.32
56 AT4G19510 Disease resistance protein (TIR-NBS-LRR class) 0.5 0.33 -0.31
57 AT4G11200 transposable element gene 0.5 0.3 -0.3
58 AT5G64450 BEST Arabidopsis thaliana protein match is: Putative
endonuclease or glycosyl hydrolase (TAIR:AT3G62200.1); Has
1807 Blast hits to 1807 proteins in 277 species: Archae -
0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
0.5 0.3 -0.31
59 AT4G27930 unknown protein; Has 4 Blast hits to 4 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).
-0.5 0.32 -0.31
60 AT1G25510 Eukaryotic aspartyl protease family protein -0.5 0.32 -0.32
61 AT3G56760 Protein kinase superfamily protein -0.5 0.3 -0.32
62 AT5G23780 DOMAIN OF UNKNOWN FUNCTION 724 9 DOMAIN OF UNKNOWN FUNCTION 724 9,
DOMAIN OF UNKNOWN FUNCTION 724 9
-0.49 0.31 -0.33
63 AT4G24170 ATP binding microtubule motor family protein 0.49 0.29 -0.29
64 AT1G24110 Peroxidase superfamily protein 0.49 0.33 -0.32
65 AT2G19330 plant intracellular ras group-related LRR 6 plant intracellular ras
group-related LRR 6
-0.49 0.29 -0.3
66 AT1G76780 HSP20-like chaperones superfamily protein 0.49 0.35 -0.31
67 AT2G29620 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G07330.1); Has 887 Blast hits
to 750 proteins in 151 species: Archae - 2; Bacteria - 63;
Metazoa - 270; Fungi - 51; Plants - 111; Viruses - 6; Other
Eukaryotes - 384 (source: NCBI BLink).
-0.49 0.32 -0.32
68 AT5G11410 Protein kinase superfamily protein 0.49 0.34 -0.3
69 AT5G59810 Subtilase family protein ATSBT5.4, SBT5.4 0.49 0.32 -0.32
70 AT5G10660 calmodulin-binding protein-related 0.49 0.31 -0.33
71 AT4G00240 phospholipase D beta 2 phospholipase D beta 2 0.48 0.33 -0.31
72 AT4G37330 cytochrome P450, family 81, subfamily D, polypeptide 4 cytochrome P450, family 81,
subfamily D, polypeptide 4
-0.48 0.32 -0.32
73 AT5G53680 RNA-binding (RRM/RBD/RNP motifs) family protein 0.48 0.31 -0.3
74 AT4G17505 Protein of Unknown Function (DUF239) 0.48 0.34 -0.29
75 AT3G21650 Protein phosphatase 2A regulatory B subunit family protein -0.48 0.32 -0.32
76 AT5G38110 anti- silencing function 1b anti- silencing function 1b,
SGA01, SGA1
-0.48 0.3 -0.31
77 AT1G22970 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G71150.1); Has 134 Blast hits
to 132 proteins in 48 species: Archae - 0; Bacteria - 0;
Metazoa - 66; Fungi - 10; Plants - 48; Viruses - 0; Other
Eukaryotes - 10 (source: NCBI BLink).
-0.47 0.3 -0.32
78 AT5G41090 NAC domain containing protein 95 NAC domain containing protein 95,
NAC domain containing protein 95
0.47 0.3 -0.32
79 AT1G61480 S-locus lectin protein kinase family protein 0.47 0.3 -0.3
80 AT4G12180 transposable element gene -0.47 0.3 -0.32
81 AT4G25200 mitochondrion-localized small heat shock protein 23.6 mitochondrion-localized small heat
shock protein 23.6,
mitochondrion-localized small heat
shock protein 23.6
0.47 0.34 -0.31
82 AT3G17220 pectin methylesterase inhibitor 2 ATPMEI2, pectin methylesterase
inhibitor 2
0.47 0.3 -0.3
83 AT5G41490 F-box associated ubiquitination effector family protein -0.46 0.33 -0.3
84 AT1G13680 PLC-like phosphodiesterases superfamily protein 0.46 0.33 -0.33
85 AT4G37360 cytochrome P450, family 81, subfamily D, polypeptide 2 cytochrome P450, family 81,
subfamily D, polypeptide 2
-0.46 0.3 -0.35
86 AT3G43690 transposable element gene -0.46 0.3 -0.33
87 AT2G22070 pentatricopeptide (PPR) repeat-containing protein -0.46 0.32 -0.31
88 ATMG00630 hypothetical protein ORF110B 0.45 0.3 -0.32
89 AT2G41860 calcium-dependent protein kinase 14 calcium-dependent protein kinase
14
0.45 0.31 -0.29
90 AT4G27150 seed storage albumin 2 AT2S2, seed storage albumin 2 0.45 0.33 -0.31
91 AT3G55550 Concanavalin A-like lectin protein kinase family protein 0.45 0.3 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
92 C0198 Phosphatidylethanolamine-34:0 - - - 0.78 0.44 -0.46
93 C0186 NAD - NAD+ ammonia assimilation cycle II,
aspartate degradation II,
adenosine nucleotides degradation I,
plant sterol biosynthesis II,
UDP-D-xylose and UDP-D-glucuronate biosynthesis,
NAD biosynthesis I (from aspartate),
ethanol degradation IV (peroxisomal),
abscisic acid biosynthesis,
palmitate biosynthesis II (bacteria and plants),
zeaxanthin biosynthesis,
sucrose degradation to ethanol and lactate (anaerobic),
glutamate degradation IV,
stearate biosynthesis II (plants),
guanosine nucleotides degradation II,
glutamate degradation I,
mannitol degradation II,
glycerol-3-phosphate shuttle,
2-ketoglutarate dehydrogenase complex,
arginine degradation I (arginase pathway),
aerobic respiration (alternative oxidase pathway),
branched-chain alpha-keto acid dehydrogenase complex,
4-aminobutyrate degradation IV,
glycolysis I,
glycine cleavage complex,
lysine degradation II,
fatty acid beta-oxidation II (core pathway),
nitrate reduction II (assimilatory),
TCA cycle variation V (plant),
leucine degradation I,
thiamine biosynthesis II,
acetaldehyde biosynthesis I,
sorbitol degradation I,
glutamine biosynthesis III,
aerobic respiration (cytochrome c),
ethanol degradation I,
ascorbate biosynthesis I (L-galactose pathway),
glycolysis IV (plant cytosol),
benzoate biosynthesis II (CoA-independent, non-beta-oxidative),
siroheme biosynthesis,
TCA cycle variation III (eukaryotic),
isoleucine degradation I,
pyridine nucleotide cycling (plants),
tyrosine biosynthesis I,
gluconeogenesis I,
glycine betaine biosynthesis III (plants),
traumatin and (Z)-3-hexen-1-yl acetate biosynthesis,
NAD/NADH phosphorylation and dephosphorylation,
guanosine nucleotides degradation I,
purine nucleotides de novo biosynthesis II,
acetyl-CoA biosynthesis (from pyruvate),
serine biosynthesis,
photorespiration,
histidine biosynthesis,
glyoxylate cycle,
jasmonic acid biosynthesis,
alanine degradation II (to D-lactate),
a ubiquinone + NADH + H+ -> a ubiquinol + NAD+,
putrescine degradation IV,
brassinosteroid biosynthesis III,
fatty acid elongation -- saturated,
pyruvate fermentation to ethanol II,
beta-alanine biosynthesis II,
4-hydroxybenzoate biosynthesis V,
plant sterol biosynthesis,
urate biosynthesis/inosine 5'-phosphate degradation,
phenylalanine degradation III,
glutamate biosynthesis IV,
leucine biosynthesis,
fatty acid alpha-oxidation,
a ubiquinone + NADH + H+ -> NAD+ + a ubiquinol,
Fe(III)-reduction and Fe(II) transport,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
phenylethanol biosynthesis,
pyruvate fermentation to lactate,
superpathway of glyoxylate cycle and fatty acid degradation,
fatty acid omega-oxidation,
galactose degradation III,
ethanol degradation II (cytosol),
sucrose biosynthesis I,
valine degradation I,
folate transformations II
-0.74 0.43 -0.45 C0186
94 C0172 MST_2214.3 - - - -0.74 0.44 -0.48
95 C0027 2-Oxoglutaric acid - α-Ketoglutarate gibberellin biosynthesis III (early C-13 hydroxylation),
leucopelargonidin and leucocyanidin biosynthesis,
aspartate degradation II,
ornithine biosynthesis,
isoleucine biosynthesis I (from threonine),
pantothenate biosynthesis,
phenylalanine degradation III,
flavonol biosynthesis,
lysine biosynthesis VI,
luteolin biosynthesis,
ammonia assimilation cycle II,
serine biosynthesis,
flavonoid biosynthesis,
glutamate biosynthesis V,
aspartate biosynthesis,
glutamate degradation I,
gibberellin inactivation I (2beta-hydroxylation),
alanine degradation III,
photorespiration,
valine biosynthesis,
glycine biosynthesis,
arginine biosynthesis II (acetyl cycle),
arginine degradation I (arginase pathway),
gibberellin biosynthesis II (early C-3 hydroxylation),
leucine biosynthesis,
glutamate biosynthesis IV,
tyrosine biosynthesis II,
proline biosynthesis III,
citrulline biosynthesis,
anthocyanin biosynthesis (pelargonidin 3-O-glucoside, cyanidin 3-O-glucoside),
L-Ndelta-acetylornithine biosynthesis,
isoleucine degradation I,
alanine biosynthesis II,
tyrosine biosynthesis I,
TCA cycle variation III (eukaryotic),
leucine degradation I,
alanine degradation II (to D-lactate),
TCA cycle variation V (plant),
arginine degradation VI (arginase 2 pathway),
valine degradation I,
gibberellin biosynthesis I (non C-3, non C-13 hydroxylation),
1,4-dihydroxy-2-naphthoate biosynthesis II (plants),
2-ketoglutarate dehydrogenase complex,
glutamate degradation IV,
tyrosine degradation I,
anthocyanin biosynthesis (delphinidin 3-O-glucoside),
IAA biosynthesis I,
phenylalanine biosynthesis II,
lysine degradation II,
scopoletin biosynthesis,
4-hydroxyphenylpyruvate biosynthesis,
histidine biosynthesis,
glutamine biosynthesis III,
leucodelphinidin biosynthesis
-0.74 0.43 -0.44 C0027
96 C0087 Erythrose-4-phosphate D-Erythrose-4-phosphate D-Erythrose-4-phosphate Rubisco shunt,
pentose phosphate pathway (non-oxidative branch),
chorismate biosynthesis,
Calvin-Benson-Bassham cycle
-0.73 0.47 -0.43 C0087
97 C0149 Mevalonolactone D,L-Mevalonolactone - terpenoid biosynthesis -0.73 0.42 -0.44
98 C0006 β-Homothreonine L-β-Homothreonine - - -0.7 0.46 -0.44
99 C0159 MST_1505.6 - - - -0.69 0.48 -0.48
100 C0234 Sinapoyl glucose 1-O-Sinapoyl-β-D-glucose 1-O-Sinapoyl-β-D-glucose sinapate ester biosynthesis -0.68 0.45 -0.44 C0234
101 C0169 MST_2105.7 - - - -0.66 0.47 -0.44
102 C0096 Gluconic acid - D-Gluconate - 0.64 0.47 -0.45 C0096
103 C0162 MST_1588.3 - - - -0.64 0.42 -0.45
104 C0195 Phenylpyruvic acid - Phenylpyruvate phenylalanine degradation III -0.63 0.46 -0.43 C0195
105 C0011 N-Acetyl-glutamic acid N-Acetyl-D,L-glutamic acid N-Acetyl-L-glutamate arginine biosynthesis II (acetyl cycle),
ornithine biosynthesis
-0.62 0.47 -0.45 C0011
106 C0261 UDP-glucose - UDP-D-glucose quercetin glucoside biosynthesis (Arabidopsis),
abscisic acid glucose ester biosynthesis,
anthocyanin biosynthesis (delphinidin 3-O-glucoside),
UDP-glucose biosynthesis (from sucrose),
2,4,6-trinitrotoluene degradation,
galactose degradation I (Leloir pathway),
cytokinins-O-glucoside biosynthesis,
trehalose biosynthesis I,
dolichyl-diphosphooligosaccharide biosynthesis,
phenolic malonylglucosides biosynthesis,
callose biosynthesis,
superpathway of anthocyanin biosynthesis (from cyanidin and cyanidin 3-O-glucoside),
glucosinolate biosynthesis from hexahomomethionine,
coniferin metabolism,
glucosinolate biosynthesis from phenylalanine,
xyloglucan biosynthesis,
glucosinolate biosynthesis from pentahomomethionine,
anthocyanin biosynthesis (pelargonidin 3-O-glucoside, cyanidin 3-O-glucoside),
glucosinolate biosynthesis from dihomomethionine,
cellulose biosynthesis,
sinapate ester biosynthesis,
superpathway of IAA conjugate biosynthesis,
salicylate glucosides biosynthesis IV,
sucrose biosynthesis I,
glucosinolate biosynthesis from trihomomethionine,
tetrahydrofolate biosynthesis II,
sucrose degradation III,
UDP-D-xylose and UDP-D-glucuronate biosynthesis,
coumarin biosynthesis (via 2-coumarate),
superpathway of sucrose and starch metabolism I (non-photosynthetic tissue),
monolignol glucosides biosynthesis,
glucosinolate biosynthesis from homomethionine,
kaempferol glucoside biosynthesis (Arabidopsis),
salicylate glucosides biosynthesis III,
cytokinins 7-N-glucoside biosynthesis,
galactose degradation III,
cytokinins 9-N-glucoside biosynthesis,
glucosinolate biosynthesis from tryptophan,
UDP-galactose biosynthesis,
salicylate glucosides biosynthesis II,
stachyose degradation,
superpathway of sucrose and starch metabolism II (photosynthetic tissue),
UDP-glucose biosynthesis (from glucose 6-phosphate),
sphingolipid biosynthesis (plants),
glucosinolate biosynthesis from tetrahomomethionine,
galactose degradation II,
UDP-L-rhamnose biosynthesis
-0.62 0.44 -0.45 C0261
107 C0262 UDP-glucuronic acid - UDP-D-glucuronate xylan biosynthesis,
UDP-D-glucuronate biosynthesis (from myo-inositol),
UDP-D-galacturonate biosynthesis I (from UDP-D-glucuronate),
UDP-D-apiose biosynthesis (from UDP-D-glucuronate),
galactose degradation III,
UDP-D-xylose and UDP-D-glucuronate biosynthesis
-0.61 0.47 -0.44 C0262
108 C0088 FAD - FAD cytokinins degradation,
lysine degradation II,
valine degradation I,
isoleucine degradation I,
flavin biosynthesis I (bacteria and plants)
-0.6 0.47 -0.42 C0088
109 C0187 Neoeriocitrin - - - 0.54 0.45 -0.44