AT5G41600 : VIRB2-interacting protein 3
Query Information
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AGICode AT5G41600
Description VIRB2-interacting protein 3
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G41600 VIRB2-interacting protein 3 VIRB2-interacting protein 3,
Reticulan like protein B4		 1 0.31 -0.31
2 AT2G26060 Transducin/WD40 repeat-like superfamily protein embryo defective 1345 0.77 0.31 -0.33
3 AT4G37210 Tetratricopeptide repeat (TPR)-like superfamily protein 0.76 0.31 -0.31
4 AT5G24840 tRNA (guanine-N-7) methyltransferase 0.75 0.3 -0.29
5 AT3G07170 Sterile alpha motif (SAM) domain-containing protein 0.74 0.3 -0.32
6 AT3G53500 RNA-binding (RRM/RBD/RNP motifs) family protein with
retrovirus zinc finger-like domain		 arginine/serine-rich zinc
knuckle-containing protein 32,
arginine/serine-rich zinc
knuckle-containing protein 32,
arginine/serine-rich zinc
knuckle-containing protein 32		 0.74 0.31 -0.33
7 AT1G51600 ZIM-LIKE 2 GATA TRANSCRIPTION FACTOR 28,
TIFY2A, ZIM-LIKE 2		 0.73 0.33 -0.33
8 AT1G13690 ATPase E1 ATPase E1 0.73 0.33 -0.3
9 AT3G59300 Pentatricopeptide repeat (PPR) superfamily protein -0.73 0.31 -0.33
10 AT3G62840 Small nuclear ribonucleoprotein family protein 0.73 0.29 -0.31
11 AT2G43970 RNA-binding protein -0.72 0.3 -0.32
12 AT2G24490 replicon protein A2 ATRPA2, ATRPA32A, SUPPRESSOR OF
ROS1, replicon protein A2, RPA32A		 0.72 0.31 -0.32
13 AT4G29540 bacterial transferase hexapeptide repeat-containing protein AtLpxA, LpxA 0.72 0.31 -0.33
14 AT4G28440 Nucleic acid-binding, OB-fold-like protein 0.71 0.32 -0.34
15 AT2G32080 purin-rich alpha 1 purin-rich alpha 1 -0.71 0.34 -0.33
16 AT1G17340 Phosphoinositide phosphatase family protein -0.7 0.31 -0.33
17 AT3G58690 Protein kinase superfamily protein 0.7 0.31 -0.32
18 AT1G28320 protease-related DEG15 -0.69 0.32 -0.33
19 AT5G56740 histone acetyltransferase of the GNAT family 2 HAC07, HAC7, HAG02, histone
acetyltransferase of the GNAT
family 2		 0.69 0.3 -0.3
20 AT1G13380 Protein of unknown function (DUF1218) 0.69 0.3 -0.31
21 AT2G27970 CDK-subunit 2 CDK-subunit 2 0.69 0.3 -0.34
22 AT5G13760 Plasma-membrane choline transporter family protein -0.68 0.32 -0.32
23 AT2G35050 Protein kinase superfamily protein with
octicosapeptide/Phox/Bem1p domain		 -0.68 0.31 -0.34
24 AT1G32860 Glycosyl hydrolase superfamily protein 0.68 0.31 -0.3
25 AT1G04440 casein kinase like 13 casein kinase like 13 -0.67 0.32 -0.31
26 AT4G35750 SEC14 cytosolic factor family protein / phosphoglyceride
transfer family protein		 -0.67 0.31 -0.32
27 AT5G46340 O-acetyltransferase family protein REDUCED WALL ACETYLATION 1 -0.67 0.32 -0.34
28 AT2G38730 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family
protein		 0.67 0.34 -0.3
29 AT5G55760 sirtuin 1 sirtuin 1 0.67 0.3 -0.32
30 AT1G75180 Erythronate-4-phosphate dehydrogenase family protein 0.66 0.32 -0.33
31 AT3G16910 acyl-activating enzyme 7 acyl-activating enzyme 7, ACETATE
NON-UTILIZING 1		 -0.66 0.31 -0.33
32 AT1G73010 phosphate starvation-induced gene 2 pyrophosphate-specific
phosphatase1, phosphate
starvation-induced gene 2,
pyrophosphate-specific
phosphatase1, phosphate
starvation-induced gene 2		 -0.66 0.32 -0.32
33 AT3G25740 methionine aminopeptidase 1C methionine aminopeptidase 1C,
METHIONINE AMINOPEPTIDASE 1C		 -0.66 0.32 -0.31
34 AT2G17560 high mobility group B4 high mobility group B4, NFD04,
NUCLEOSOME/CHROMATIN ASSEMBLY
FACTOR D4		 0.66 0.31 -0.3
35 AT1G77420 alpha/beta-Hydrolases superfamily protein -0.66 0.31 -0.32
36 AT1G18450 actin-related protein 4 actin-related protein 4,
actin-related protein 4		 0.66 0.33 -0.31
37 AT1G14790 RNA-dependent RNA polymerase 1 ATRDRP1, RNA-dependent RNA
polymerase 1		 -0.66 0.31 -0.32
38 AT2G43260 F-box and associated interaction domains-containing protein 0.65 0.33 -0.32
39 AT3G27670 ARM repeat superfamily protein RESURRECTION1 -0.65 0.31 -0.32
40 AT1G02840 RNA-binding (RRM/RBD/RNP motifs) family protein Serine/Arginine-Rich Protein
Splicing Factor 34, ATSRP34, SR1,
Serine/Arginine-Rich Protein
Splicing Factor 34, SRP34		 0.65 0.31 -0.33
41 AT5G23810 amino acid permease 7 amino acid permease 7 -0.65 0.32 -0.33
42 AT1G03420 transposable element gene sadhu non-coding retrotransposon
4-2		 0.65 0.32 -0.31
43 AT3G14920 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A
protein		 -0.65 0.31 -0.31
44 AT1G24190 SIN3-like 3 ARABIDOPSIS THALIANA SIN3 HOMOLOG,
ARABIDOPSIS THALIANA SIN3 HOMOLOG,
SIN3-like 3		 -0.65 0.31 -0.3
45 AT3G11230 Yippee family putative zinc-binding protein -0.65 0.34 -0.31
46 AT1G49560 Homeodomain-like superfamily protein 0.64 0.33 -0.33
47 AT3G56360 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G05250.1); Has 45 Blast
hits to 45 proteins in 13 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.64 0.3 -0.33
48 AT1G48790 associated molecule with the SH3 domain of STAM 1 associated molecule with the SH3
domain of STAM 1		 -0.64 0.32 -0.32
49 AT3G47420 phosphate starvation-induced gene 3 Glycerol-3-phosphate permease 1,
phosphate starvation-induced gene
3, Glycerol-3-phosphate permease
1, phosphate starvation-induced
gene 3		 -0.64 0.31 -0.31
50 AT5G16210 HEAT repeat-containing protein -0.64 0.32 -0.31
51 AT5G45750 RAB GTPase homolog A1C RAB GTPase homolog A1C, RAB GTPase
homolog A1C		 0.64 0.34 -0.32
52 AT5G04280 RNA-binding (RRM/RBD/RNP motifs) family protein with
retrovirus zinc finger-like domain		 AtRZ-1c, RZ-1c 0.64 0.29 -0.33
53 AT5G25520 SPOC domain / Transcription elongation factor S-II protein -0.64 0.32 -0.31
54 AT4G01450 nodulin MtN21 /EamA-like transporter family protein -0.64 0.31 -0.33
55 AT4G13020 Protein kinase superfamily protein MHK -0.64 0.34 -0.32
56 AT3G03790 ankyrin repeat family protein / regulator of chromosome
condensation (RCC1) family protein		 -0.63 0.33 -0.32
57 AT5G36910 thionin 2.2 thionin 2.2 0.63 0.29 -0.32
58 AT3G09600 Homeodomain-like superfamily protein LHY-CCA1-LIKE5, REVEILLE 8 -0.63 0.32 -0.29
59 AT3G28890 receptor like protein 43 receptor like protein 43, receptor
like protein 43		 -0.63 0.3 -0.32
60 AT1G52550 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT3G15780.1); Has 53 Blast
hits to 51 proteins in 18 species: Archae - 0; Bacteria -
8; Metazoa - 4; Fungi - 0; Plants - 23; Viruses - 8; Other
Eukaryotes - 10 (source: NCBI BLink).		 -0.63 0.31 -0.32
61 AT1G68810 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 0.63 0.3 -0.3
62 AT1G77850 auxin response factor 17 auxin response factor 17 0.63 0.33 -0.31
63 AT4G32850 nuclear poly(a) polymerase nuclear poly(a) polymerase,
poly(A) polymerase IV		 -0.63 0.32 -0.32
64 AT3G17790 purple acid phosphatase 17 ATACP5, ATPAP17, purple acid
phosphatase 17		 -0.63 0.31 -0.31
65 AT1G54360 TBP-ASSOCIATED FACTOR 6B TBP-ASSOCIATED FACTOR 6B,
TBP-ASSOCIATED FACTOR 6B1,
TBP-ASSOCIATED FACTOR 6B2,
TBP-associated factor 6B4		 -0.63 0.33 -0.31
66 AT3G17510 CBL-interacting protein kinase 1 CBL-interacting protein kinase 1,
SNF1-RELATED PROTEIN KINASE 3.16		 -0.62 0.32 -0.32
67 AT5G40600 unknown protein; FUNCTIONS IN: molecular_function unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT3G27420.1); Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 0.62 0.32 -0.3
68 AT1G10370 Glutathione S-transferase family protein GLUTATHIONE S-TRANSFERASE TAU 17,
EARLY-RESPONSIVE TO DEHYDRATION 9,
GLUTATHIONE S-TRANSFERASE 30,
GLUTATHIONE S-TRANSFERASE 30B,
GLUTATHIONE S-TRANSFERASE U17		 0.62 0.3 -0.31
69 AT2G42490 Copper amine oxidase family protein -0.62 0.3 -0.31
70 AT3G01360 Family of unknown function (DUF716) -0.61 0.34 -0.33
71 AT5G05700 arginine-tRNA protein transferase 1 ATATE1, arginine-tRNA protein
transferase 1, DELAYED LEAF
SENESCENCE 1		 -0.61 0.32 -0.31
72 AT2G01680 Ankyrin repeat family protein -0.61 0.33 -0.29
73 AT4G34310 alpha/beta-Hydrolases superfamily protein -0.61 0.32 -0.33
74 AT1G17980 poly(A) polymerase 1 poly(A) polymerase 1 -0.61 0.32 -0.3
75 AT1G03030 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.61 0.29 -0.31
76 AT1G01490 Heavy metal transport/detoxification superfamily protein -0.61 0.3 -0.29
77 AT1G21640 NAD kinase 2 NAD KINASE 2, NAD kinase 2 -0.6 0.31 -0.33
78 AT1G12470 zinc ion binding -0.59 0.3 -0.29
79 AT2G20790 clathrin adaptor complexes medium subunit family protein -0.59 0.31 -0.31
80 AT3G04530 phosphoenolpyruvate carboxylase kinase 2 ATPPCK2, PHOSPHOENOLPYRUVATE
CARBOXYLASE KINASE 2,
phosphoenolpyruvate carboxylase
kinase 2		 -0.59 0.31 -0.32
81 AT5G55810 nicotinate/nicotinamide mononucleotide adenyltransferase nicotinate/nicotinamide
mononucleotide adenyltransferase,
nicotinate/nicotinamide
mononucleotide adenyltransferase		 -0.59 0.33 -0.32
82 AT1G30810 Transcription factor jumonji (jmj) family protein / zinc
finger (C5HC2 type) family protein		 -0.58 0.33 -0.31
83 AT3G49060 U-box domain-containing protein kinase family protein -0.58 0.33 -0.29
84 AT1G08680 ARF GAP-like zinc finger-containing protein ZIGA4 ARF-GAP domain 14, ARF GAP-like
zinc finger-containing protein
ZIGA4		 -0.58 0.31 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
85 C0053 ADP - ADP phosphatidylcholine biosynthesis I,
mannitol degradation II,
lipid IVA biosynthesis,
stachyose degradation,
Rubisco shunt,
copper transport II,
glycerol degradation IV,
chorismate biosynthesis,
folate polyglutamylation II,
galactose degradation III,
D-myo-inositol (1,4,5)-trisphosphate biosynthesis,
UDP-L-arabinose biosynthesis II (from L-arabinose),
cadmium transport I,
folate polyglutamylation,
coenzyme A biosynthesis,
sulfate activation for sulfonation,
1,4-dihydroxy-2-naphthoate biosynthesis II (plants),
pyrimidine deoxyribonucleotides de novo biosynthesis I,
galactose degradation II,
inosine-5'-phosphate biosynthesis II,
ribose degradation,
acetyl-CoA biosynthesis (from citrate),
inositol pyrophosphates biosynthesis,
fatty acid biosynthesis initiation I,
xylose degradation I,
adenine and adenosine salvage VI,
TCA cycle variation III (eukaryotic),
tetrahydrofolate biosynthesis II,
phosphatidylethanolamine biosynthesis II,
pyridoxal 5'-phosphate salvage pathway,
citrulline biosynthesis,
trans-zeatin biosynthesis,
glutamine biosynthesis I,
arginine biosynthesis II (acetyl cycle),
L-Ndelta-acetylornithine biosynthesis,
mevalonate pathway I,
methionine biosynthesis II,
trehalose degradation II (trehalase),
citrulline degradation,
methionine salvage pathway,
TCA cycle variation V (plant),
chlorophyllide a biosynthesis I,
starch degradation I,
methylerythritol phosphate pathway,
pyridine nucleotide cycling (plants),
ceramide degradation,
biotin-carboxyl carrier protein assembly,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
UDP-D-galacturonate biosynthesis II (from D-galacturonate),
asparagine biosynthesis III (tRNA-dependent),
superpathway of glyoxylate cycle and fatty acid degradation,
NAD/NADH phosphorylation and dephosphorylation,
1D-myo-inositol hexakisphosphate biosynthesis V (from Ins(1,3,4)P3),
galactose degradation I (Leloir pathway),
uridine-5'-phosphate biosynthesis,
lipid-dependent phytate biosynthesis II (via Ins(1,3,4)P3),
sucrose degradation III,
lysine biosynthesis VI,
sphingolipid biosynthesis (plants),
choline biosynthesis I,
GDP-glucose biosynthesis,
photorespiration,
gamma-glutamyl cycle (plant pathway),
5-aminoimidazole ribonucleotide biosynthesis I,
gamma-glutamyl cycle,
thiamine biosynthesis II,
proline biosynthesis III,
glutathione biosynthesis,
folate transformations II,
ornithine biosynthesis,
diphthamide biosynthesis,
S-methyl-5'-thioadenosine degradation I,
starch biosynthesis,
arginine biosynthesis I,
homoserine biosynthesis,
flavin biosynthesis I (bacteria and plants),
sucrose biosynthesis I,
leucine degradation I,
glycolysis I,
pyrimidine ribonucleotides interconversion,
1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza),
glycolysis IV (plant cytosol),
Calvin-Benson-Bassham cycle,
UDP-D-glucuronate biosynthesis (from myo-inositol),
guanine and guanosine salvage III,
glutamine biosynthesis III,
L-glutamine biosynthesis II (tRNA-dependent),
GDP-L-fucose biosynthesis II (from L-fucose),
nitrate reduction II (assimilatory),
ammonia assimilation cycle II,
gluconeogenesis I,
threonine biosynthesis from homoserine,
mannose degradation,
urea cycle,
lipid-dependent phytate biosynthesis I (via Ins(1,4,5)P3),
biotin biosynthesis II 		-0.69 0.44 -0.43 C0053
86 C0149 Mevalonolactone D,L-Mevalonolactone - terpenoid biosynthesis -0.68 0.42 -0.42
87 C0140 Lysine L-Lysine L-Lysine lysine degradation II,
tRNA charging,
lysine biosynthesis VI,
lysine degradation I 		-0.64 0.33 -0.31 C0140
88 C0091 Fructose-1,6-bisphosphate D-Fructose-1,6-bisphosphate Fructose-1,6-bisphosphate gluconeogenesis I,
Calvin-Benson-Bassham cycle,
glycolysis IV (plant cytosol),
glycolysis I,
CA1P biosynthesis,
sucrose biosynthesis I 		-0.62 0.45 -0.44 C0091