AT5G17870 : plastid-specific 50S ribosomal protein 6
Query Information
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AGICode AT5G17870
Description plastid-specific 50S ribosomal protein 6
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G17870 plastid-specific 50S ribosomal protein 6 plastid-specific 50S ribosomal
protein 6		 1 0.34 -0.32
2 AT1G43170 ribosomal protein 1 ribosomal protein 1, embryo
defective 2207, ribosomal protein
1, RPL3A		 0.89 0.32 -0.32
3 AT5G28500 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT3G04550.1); Has 109 Blast hits to 109 proteins in
49 species: Archae - 0; Bacteria - 67; Metazoa - 0; Fungi -
0; Plants - 41; Viruses - 0; Other Eukaryotes - 1 (source:
NCBI BLink).		 0.88 0.32 -0.32
4 AT4G11100 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G03060.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.87 0.32 -0.3
5 AT4G13050 Acyl-ACP thioesterase 0.87 0.31 -0.33
6 AT1G63880 Disease resistance protein (TIR-NBS-LRR class) family 0.84 0.33 -0.29
7 AT3G53710 ARF-GAP domain 6 ARF-GAP domain 6 0.84 0.31 -0.3
8 AT1G62640 3-ketoacyl-acyl carrier protein synthase III 3-ketoacyl-acyl carrier protein
synthase III		 0.83 0.31 -0.3
9 AT1G62830 LSD1-like 1 ARABIDOPSIS LYSINE-SPECIFIC
HISTONE DEMETHYLASE, ATSWP1,
LSD1-like 1, LYSINE-SPECIFIC
HISTONE DEMETHYLASE, SWP1		 0.81 0.32 -0.31
10 AT3G55170 Ribosomal L29 family protein 0.8 0.3 -0.29
11 AT1G73530 RNA-binding (RRM/RBD/RNP motifs) family protein 0.8 0.35 -0.29
12 AT5G17790 zinc finger (Ran-binding) family protein VARIEGATED 3 0.8 0.33 -0.3
13 AT1G74320 Protein kinase superfamily protein 0.79 0.33 -0.33
14 AT1G59900 pyruvate dehydrogenase complex E1 alpha subunit pyruvate dehydrogenase complex E1
alpha subunit, pyruvate
dehydrogenase complex E1 alpha
subunit		 0.78 0.33 -0.31
15 AT5G05890 UDP-Glycosyltransferase superfamily protein 0.78 0.34 -0.34
16 AT5G37290 ARM repeat superfamily protein 0.78 0.32 -0.33
17 AT5G17890 DA1-related protein 4 CHILLING SENSITIVE 3, DA1-related
protein 4		 0.77 0.33 -0.32
18 AT1G68370 Chaperone DnaJ-domain superfamily protein ALTERED RESPONSE TO GRAVITY 1 0.77 0.33 -0.31
19 AT1G57770 FAD/NAD(P)-binding oxidoreductase family protein 0.77 0.3 -0.33
20 AT1G62330 O-fucosyltransferase family protein 0.77 0.31 -0.29
21 AT5G20580 BEST Arabidopsis thaliana protein match is: FRIGIDA
interacting protein 1 (TAIR:AT2G06005.1); Has 167 Blast
hits to 167 proteins in 73 species: Archae - 0; Bacteria -
25; Metazoa - 58; Fungi - 25; Plants - 43; Viruses - 0;
Other Eukaryotes - 16 (source: NCBI BLink).		 0.77 0.31 -0.33
22 AT3G08890 Protein of unknown function, DUF538 0.76 0.32 -0.33
23 AT5G08540 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane, chloroplast, chloroplast
envelope; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 13 growth stages; Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 0.76 0.31 -0.32
24 AT1G61730 DNA-binding storekeeper protein-related transcriptional
regulator		 0.76 0.34 -0.31
25 AT5G03345 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s:
Magnesium transporter (InterPro:IPR018937); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.75 0.29 -0.34
26 AT1G65290 mitochondrial acyl carrier protein 2 mitochondrial acyl carrier protein
2		 0.75 0.31 -0.31
27 AT1G47250 20S proteasome alpha subunit F2 20S proteasome alpha subunit F2 0.75 0.32 -0.33
28 AT4G02790 GTP-binding family protein EMBRYO DEFECTIVE 3129 0.75 0.32 -0.3
29 AT4G12060 Double Clp-N motif protein 0.74 0.31 -0.33
30 AT4G01130 GDSL-like Lipase/Acylhydrolase superfamily protein 0.74 0.3 -0.3
31 AT5G17880 disease resistance protein (TIR-NBS-LRR class) constitutive shade-avoidance1 0.74 0.31 -0.31
32 AT3G53700 Pentatricopeptide repeat (PPR) superfamily protein maternal effect embryo arrest 40 0.74 0.33 -0.32
33 AT5G40830 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.73 0.31 -0.31
34 AT1G64190 6-phosphogluconate dehydrogenase family protein 0.73 0.32 -0.3
35 AT5G27270 Tetratricopeptide repeat (TPR)-like superfamily protein EMBRYO DEFECTIVE 976 0.73 0.29 -0.33
36 AT5G40950 ribosomal protein large subunit 27 ribosomal protein large subunit 27 0.72 0.31 -0.28
37 AT5G06060 NAD(P)-binding Rossmann-fold superfamily protein 0.72 0.31 -0.32
38 AT1G62850 Class I peptide chain release factor 0.72 0.3 -0.32
39 AT1G58150 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: in 9 processes; LOCATED IN: cellular_component
unknown; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 1 Blast hits to 1 proteins in
1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.72 0.32 -0.31
40 AT1G49950 telomere repeat binding factor 1 TELOMERE REPEAT BINDING FACTOR 1,
telomere repeat binding factor 1		 0.72 0.29 -0.3
41 AT5G35730 EXS (ERD1/XPR1/SYG1) family protein 0.72 0.3 -0.31
42 AT5G02310 proteolysis 6 proteolysis 6 -0.72 0.31 -0.29
43 AT5G16250 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G02640.1); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 0.72 0.31 -0.31
44 AT5G04320 Shugoshin C terminus 0.71 0.29 -0.35
45 AT5G27990 Pre-rRNA-processing protein TSR2, conserved region 0.71 0.32 -0.3
46 AT1G64270 transposable element gene 0.71 0.33 -0.3
47 AT1G47900 Plant protein of unknown function (DUF869) 0.71 0.32 -0.31
48 AT3G53380 Concanavalin A-like lectin protein kinase family protein 0.71 0.3 -0.32
49 AT4G19240 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G43280.1); Has 19 Blast hits
to 17 proteins in 2 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.7 0.33 -0.32
50 AT5G05750 DNAJ heat shock N-terminal domain-containing protein 0.7 0.33 -0.31
51 AT4G08280 Thioredoxin superfamily protein 0.7 0.31 -0.32
52 AT4G11830 phospholipase D gamma 2 phospholipase D gamma 2 0.7 0.33 -0.31
53 AT1G65060 4-coumarate:CoA ligase 3 4-coumarate:CoA ligase 3 0.7 0.31 -0.32
54 AT1G79070 SNARE-associated protein-related 0.7 0.3 -0.31
55 AT4G05520 EPS15 homology domain 2 EPS15 homology domain 2, EPS15
homology domain 2		 0.69 0.33 -0.28
56 AT5G42280 Cysteine/Histidine-rich C1 domain family protein 0.69 0.33 -0.3
57 AT5G42720 Glycosyl hydrolase family 17 protein 0.69 0.31 -0.31
58 AT1G65870 Disease resistance-responsive (dirigent-like protein)
family protein		 0.69 0.32 -0.29
59 AT4G09680 conserved telomere maintenance component 1 ATCTC1, conserved telomere
maintenance component 1		 0.69 0.33 -0.31
60 AT5G39990 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein		 0.69 0.31 -0.31
61 AT5G17240 SET domain group 40 SET domain group 40 0.69 0.3 -0.34
62 AT1G49630 presequence protease 2 presequence protease 2,
presequence protease 2		 0.69 0.31 -0.31
63 AT4G29020 glycine-rich protein 0.69 0.31 -0.31
64 AT1G64490 DEK, chromatin associated protein 0.69 0.3 -0.32
65 AT1G64300 Protein kinase family protein 0.69 0.33 -0.31
66 AT1G47790 F-box and associated interaction domains-containing protein 0.68 0.28 -0.35
67 AT1G63170 Zinc finger, C3HC4 type (RING finger) family protein 0.68 0.31 -0.32
68 AT3G15800 Glycosyl hydrolase superfamily protein 0.68 0.34 -0.3
69 AT1G51360 dimeric A/B barrel domainS-protein 1 DIMERIC A/B BARREL DOMAINS-PROTEIN
1, dimeric A/B barrel
domainS-protein 1		 0.68 0.3 -0.31
70 AT5G06660 Protein of unknown function DUF106, transmembrane 0.68 0.31 -0.32
71 AT5G51820 phosphoglucomutase ARABIDOPSIS THALIANA
PHOSPHOGLUCOMUTASE,
phosphoglucomutase, PGM1,
STARCH-FREE 1		 0.68 0.33 -0.33
72 AT4G27050 F-box/RNI-like superfamily protein -0.68 0.32 -0.31
73 AT1G72170 Domain of unknown function (DUF543) 0.67 0.32 -0.32
74 AT1G68930 pentatricopeptide (PPR) repeat-containing protein 0.67 0.31 -0.31
75 AT5G23230 nicotinamidase 2 nicotinamidase 2 0.67 0.29 -0.29
76 AT1G51500 ABC-2 type transporter family protein ATP-binding cassette G12,
AtABCG12, ARABIDOPSIS THALIANA
WHITE-BROWN COMPLEX 12, ECERIFERUM
5, D3, WHITE-BROWN COMPLEX 12		 0.66 0.32 -0.32
77 AT1G61900 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
anchored to plasma membrane, plasma membrane, anchored to
membrane; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT2G30700.1); Has 65 Blast
hits to 65 proteins in 12 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.66 0.31 -0.31
78 AT1G65370 TRAF-like family protein 0.66 0.3 -0.31
79 AT5G10620 methyltransferases 0.65 0.33 -0.33
80 AT5G36230 ARM repeat superfamily protein 0.65 0.33 -0.32
81 AT5G36910 thionin 2.2 thionin 2.2 0.65 0.34 -0.32
82 AT1G62150 Mitochondrial transcription termination factor family
protein		 0.65 0.31 -0.3
83 AT5G23710 DNA binding;DNA-directed RNA polymerases 0.65 0.3 -0.32
84 AT1G69790 Protein kinase superfamily protein -0.64 0.3 -0.31
85 ATMG01360 cytochrome oxidase cytochrome oxidase -0.63 0.31 -0.33
86 AT4G28040 nodulin MtN21 /EamA-like transporter family protein -0.63 0.32 -0.29
87 ATMG01200 hypothetical protein ORF294 -0.62 0.31 -0.3
88 ATMG00060 NADH dehydrogenase subunit 5C NADH DEHYDROGENASE SUBUNIT 5, NADH
DEHYDROGENASE SUBUNIT 5.3, NADH
dehydrogenase subunit 5C		 -0.62 0.32 -0.33
89 AT1G64100 pentatricopeptide (PPR) repeat-containing protein -0.61 0.33 -0.32
90 AT1G48310 chromatin remodeling factor18 CHA18, chromatin remodeling
factor18		 -0.6 0.32 -0.33
91 AT4G08960 phosphotyrosyl phosphatase activator (PTPA) family protein -0.6 0.32 -0.31
92 AT3G53210 nodulin MtN21 /EamA-like transporter family protein -0.6 0.3 -0.31
93 AT5G24760 GroES-like zinc-binding dehydrogenase family protein -0.59 0.34 -0.31
94 AT5G20620 ubiquitin 4 ubiquitin 4 -0.59 0.31 -0.33
95 AT4G36380 Cytochrome P450 superfamily protein ROTUNDIFOLIA 3 -0.58 0.3 -0.31
96 AT5G23570 XS domain-containing protein / XS zinc finger
domain-containing protein-related		 SUPPRESSOR OF GENE SILENCING 3,
SUPPRESSOR OF GENE SILENCING 3		 -0.57 0.32 -0.32
97 AT4G22960 Protein of unknown function (DUF544) -0.56 0.3 -0.34
98 AT4G22280 F-box/RNI-like superfamily protein -0.56 0.3 -0.32
99 ATMG00070 NADH dehydrogenase subunit 9 NADH dehydrogenase subunit 9 -0.56 0.3 -0.33
100 AT1G78310 VQ motif-containing protein -0.55 0.32 -0.32
101 ATMG01130 hypothetical protein ORF106F -0.54 0.31 -0.33
102 AT4G03050 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 AOP3 -0.53 0.32 -0.3
103 AT1G54040 epithiospecifier protein epithiospecifier protein,
EPITHIOSPECIFYING SENESCENCE
REGULATOR, TASTY		 -0.53 0.31 -0.3
104 AT5G51390 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.53 0.32 -0.33
105 AT4G23840 Leucine-rich repeat (LRR) family protein -0.52 0.31 -0.33
106 AT1G63540 hydroxyproline-rich glycoprotein family protein -0.52 0.33 -0.34
107 ATMG00160 cytochrome oxidase 2 cytochrome oxidase 2 -0.52 0.32 -0.33
108 AT4G08320 Tetratricopeptide repeat (TPR)-like superfamily protein tetratricopeptide repeat 8 -0.5 0.32 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
109 C0183 MST_3033.1 - - - 0.94 0.46 -0.46
110 C0038 5-(Methylthio)pentylglucosinolate - 5-Methylthiopentylglucosinolate glucosinolate biosynthesis from trihomomethionine 0.93 0.43 -0.46 C0038
111 C0033 4-(Methylsulfinyl)butylglucosinolate - 4-Methylsulfinylbutyl glucosinolate glucosinolate biosynthesis from dihomomethionine 0.91 0.48 -0.48 C0033
112 C0034 4-Methylthio-n-butylglucosinolate - 4-Methylthiobutyl glucosinolate glucosinolate biosynthesis from dihomomethionine 0.83 0.28 -0.31 C0034
113 C0244 Sucrose D-Sucrose Sucrose stachyose biosynthesis,
fructan degradation,
stachyose degradation,
galactose degradation III,
superpathway of sucrose and starch metabolism II (photosynthetic tissue),
sucrose degradation III,
UDP-glucose biosynthesis (from sucrose),
ajugose biosynthesis II (galactinol-independent),
sucrose biosynthesis I 		0.71 0.32 -0.31 C0244
114 C0037 5-Methylsulfinyl-n-pentylglucosinolate - 5-Methylsulfinylpentyl glucosinolate glucosinolate biosynthesis from trihomomethionine 0.71 0.3 -0.32 C0037
115 C0138 Linarin - - - 0.67 0.45 -0.43