AT5G11890 : EMBRYO DEFECTIVE 3135
Query Information
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AGICode AT5G11890
Description FUNCTIONS IN: molecular_function unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT1G17620.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G11890 FUNCTIONS IN: molecular_function unknown; LOCATED IN:
plasma membrane; EXPRESSED IN: 12 plant structures;
EXPRESSED DURING: 6 growth stages; BEST Arabidopsis
thaliana protein match is: Late embryogenesis abundant
(LEA) hydroxyproline-rich glycoprotein family
(TAIR:AT1G17620.1); Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 EMBRYO DEFECTIVE 3135 1 0.33 -0.32
2 AT1G19230 Riboflavin synthase-like superfamily protein -0.75 0.33 -0.31
3 AT4G13650 Pentatricopeptide repeat (PPR) superfamily protein 0.74 0.31 -0.33
4 AT5G39980 Tetratricopeptide repeat (TPR)-like superfamily protein 0.74 0.33 -0.3
5 AT5G24830 Tetratricopeptide repeat (TPR)-like superfamily protein 0.73 0.33 -0.32
6 AT2G25870 haloacid dehalogenase-like hydrolase family protein 0.72 0.34 -0.29
7 AT2G17820 histidine kinase 1 AHK1, histidine kinase 1,
histidine kinase 1		 0.72 0.29 -0.33
8 AT5G43580 Serine protease inhibitor, potato inhibitor I-type family
protein		 UNUSUAL SERINE PROTEASE INHIBITOR -0.71 0.33 -0.33
9 AT3G49600 ubiquitin-specific protease 26 ATUBP26, SUP32, ubiquitin-specific
protease 26		 0.71 0.32 -0.34
10 AT1G73020 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF590 (InterPro:IPR007632); Has 1198
Blast hits to 1128 proteins in 154 species: Archae - 0;
Bacteria - 0; Metazoa - 809; Fungi - 158; Plants - 25;
Viruses - 0; Other Eukaryotes - 206 (source: NCBI BLink).		 0.71 0.31 -0.33
11 AT5G43920 transducin family protein / WD-40 repeat family protein 0.71 0.33 -0.31
12 AT1G59990 DEA(D/H)-box RNA helicase family protein EMBRYO DEFECTIVE 3108, RNA
helicase 22		 0.7 0.32 -0.3
13 AT2G35390 Phosphoribosyltransferase family protein 0.7 0.32 -0.29
14 AT2G28050 Pentatricopeptide repeat (PPR) superfamily protein 0.7 0.35 -0.33
15 AT3G49000 RNA polymerase III subunit RPC82 family protein 0.69 0.31 -0.32
16 AT2G16400 BEL1-like homeodomain 7 BEL1-like homeodomain 7 0.69 0.31 -0.31
17 AT1G16950 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: stamen; EXPRESSED
DURING: 4 anthesis; Has 17 Blast hits to 17 proteins in 5
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.69 0.31 -0.3
18 AT1G28530 unknown protein; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures;
EXPRESSED DURING: 10 growth stages; Has 20 Blast hits to 20
proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 0.69 0.3 -0.35
19 AT4G26480 RNA-binding KH domain-containing protein 0.68 0.31 -0.34
20 AT4G24400 CBL-interacting protein kinase 8 ATCIPK8, CBL-interacting protein
kinase 8, PROTEIN KINASE 11,
SNF1-RELATED PROTEIN KINASE 3.13		 -0.68 0.31 -0.3
21 AT1G11190 bifunctional nuclease i bifunctional nuclease i,
ENDONUCLEASE 1		 -0.67 0.32 -0.32
22 AT3G01630 Major facilitator superfamily protein 0.67 0.34 -0.29
23 AT5G63030 Thioredoxin superfamily protein glutaredoxin C1 -0.67 0.32 -0.32
24 AT5G27910 nuclear factor Y, subunit C8 nuclear factor Y, subunit C8 0.66 0.29 -0.33
25 AT5G65140 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 trehalose-6-phosphate phosphatase
J		 -0.66 0.31 -0.3
26 AT1G09660 RNA-binding KH domain-containing protein 0.65 0.34 -0.31
27 AT1G03320 unknown protein; Has 1038 Blast hits to 683 proteins in 112
species: Archae - 4; Bacteria - 14; Metazoa - 318; Fungi -
117; Plants - 86; Viruses - 8; Other Eukaryotes - 491
(source: NCBI BLink).		 0.65 0.3 -0.32
28 AT1G20230 Pentatricopeptide repeat (PPR) superfamily protein 0.65 0.32 -0.33
29 AT4G29910 origin recognition complex protein 5 ATORC5, EMBRYO DEFECTIVE 2798,
origin recognition complex protein
5		 0.64 0.34 -0.32
30 AT4G17960 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G46620.1); Has 46 Blast hits
to 45 proteins in 13 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.64 0.31 -0.33
31 AT3G12690 AGC kinase 1.5 AGC kinase 1.5 0.64 0.3 -0.32
32 AT5G42670 Agenet domain-containing protein 0.64 0.33 -0.32
33 AT1G06740 transposable element gene 0.64 0.33 -0.34
34 AT3G20770 Ethylene insensitive 3 family protein AtEIN3, ETHYLENE-INSENSITIVE3 -0.63 0.33 -0.32
35 AT1G76880 Duplicated homeodomain-like superfamily protein 0.63 0.33 -0.3
36 AT2G45080 cyclin p3;1 cyclin p3;1 0.63 0.32 -0.33
37 AT3G20470 glycine-rich protein 5 ATGRP-5, ATGRP5, GLYCINE-RICH
PROTEIN 5, glycine-rich protein 5		 -0.63 0.3 -0.31
38 AT1G73380 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF1308 (InterPro:IPR010733); Has 162
Blast hits to 160 proteins in 67 species: Archae - 0;
Bacteria - 2; Metazoa - 120; Fungi - 0; Plants - 34;
Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).		 -0.63 0.31 -0.32
39 AT3G51770 tetratricopeptide repeat (TPR)-containing protein ARABIDOPSIS ETHYLENE OVERPRODUCER
1, ETHYLENE OVERPRODUCER 1		 -0.63 0.3 -0.29
40 AT5G25880 NADP-malic enzyme 3 Arabidopsis thaliana NADP-malic
enzyme 3, NADP-malic enzyme 3		 -0.62 0.33 -0.31
41 AT3G01590 Galactose mutarotase-like superfamily protein -0.62 0.31 -0.31
42 AT3G29075 glycine-rich protein -0.61 0.31 -0.32
43 AT4G10500 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.6 0.33 -0.33
44 AT4G22070 WRKY DNA-binding protein 31 ATWRKY31, WRKY DNA-binding protein
31		 -0.6 0.31 -0.33
45 AT4G01550 NAC domain containing protein 69 NAC domain containing protein 69,
NAC domain containing protein 69,
NAC with Transmembrane Motif 2		 -0.59 0.31 -0.32
46 AT5G04000 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.59 0.32 -0.34
47 AT4G17220 microtubule-associated proteins 70-5 microtubule-associated proteins
70-5, microtubule-associated
proteins 70-5		 -0.59 0.33 -0.29
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
48 C0057 Anthranilic acid - Anthranilate tryptophan biosynthesis,
benzoylanthranilate biosynthesis 		-0.76 0.45 -0.45 C0057
49 C0104 Glutathione - Glutathione glucosinolate biosynthesis from tryptophan,
glutathione redox reactions I,
glutathione degradation,
gamma-glutamyl cycle (plant pathway),
indole glucosinolate breakdown (active in intact plant cell),
selenate reduction,
glutathione redox reactions II,
glucosinolate biosynthesis from trihomomethionine,
ascorbate glutathione cycle,
glucosinolate biosynthesis from pentahomomethionine,
camalexin biosynthesis,
glucosinolate biosynthesis from homomethionine,
glucosinolate biosynthesis from phenylalanine,
methylglyoxal degradation I,
sulfate reduction II (assimilatory),
glucosinolate biosynthesis from dihomomethionine,
indole glucosinolate breakdown (insect chewing induced),
glutathione biosynthesis,
formaldehyde oxidation II (glutathione-dependent),
glutathione-mediated detoxification II,
glucosinolate biosynthesis from tetrahomomethionine,
glucosinolate biosynthesis from hexahomomethionine,
gamma-glutamyl cycle 		-0.61 0.33 -0.34 C0104