AT5G08130 : BIM1
Query Information
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AGICode AT5G08130
Description basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G08130 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 BIM1 1 0.33 -0.32
2 AT2G16960 ARM repeat superfamily protein 0.64 0.3 -0.32
3 AT5G64610 histone acetyltransferase of the MYST family 1 histone acetyltransferase of the
MYST family 1		 0.62 0.31 -0.3
4 AT4G21650 Subtilase family protein 0.6 0.3 -0.32
5 AT2G24220 purine permease 5 purine permease 5, purine permease
5		 0.59 0.31 -0.31
6 AT1G56710 Pectin lyase-like superfamily protein 0.58 0.31 -0.32
7 AT3G59170 F-box/RNI-like superfamily protein 0.58 0.3 -0.32
8 AT2G16690 transposable element gene 0.57 0.32 -0.32
9 AT3G56270 Plant protein of unknown function (DUF827) 0.57 0.35 -0.33
10 AT4G05370 BCS1 AAA-type ATPase -0.57 0.34 -0.3
11 AT4G11200 transposable element gene -0.57 0.33 -0.3
12 AT2G46640 unknown protein; Has 19 Blast hits to 19 proteins in 7
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 17; Viruses - 0; Other Eukaryotes - 2 (source:
NCBI BLink).		 0.56 0.32 -0.32
13 AT2G04070 MATE efflux family protein -0.56 0.3 -0.33
14 AT2G36120 Glycine-rich protein family DEFECTIVELY ORGANIZED TRIBUTARIES
1		 -0.55 0.33 -0.31
15 AT1G23820 spermidine synthase 1 spermidine synthase 1 -0.55 0.32 -0.32
16 AT3G50160 Plant protein of unknown function (DUF247) 0.54 0.31 -0.31
17 AT4G32375 Pectin lyase-like superfamily protein 0.54 0.3 -0.31
18 AT5G42830 HXXXD-type acyl-transferase family protein -0.53 0.3 -0.32
19 AT3G57140 sugar-dependent 1-like sugar-dependent 1-like -0.52 0.3 -0.31
20 AT1G44510 transposable element gene -0.52 0.32 -0.32
21 AT5G56160 Sec14p-like phosphatidylinositol transfer family protein 0.52 0.33 -0.29
22 AT5G30440 transposable element gene 0.51 0.31 -0.32
23 AT1G07850 Protein of unknown function (DUF604) 0.5 0.32 -0.3
24 AT4G15150 glycine-rich protein -0.5 0.31 -0.33
25 AT2G06190 transposable element gene 0.5 0.32 -0.31
26 AT3G62170 VANGUARD 1 homolog 2 VANGUARD 1 homolog 2 0.5 0.32 -0.3
27 AT5G54930 AT hook motif-containing protein -0.5 0.35 -0.32
28 AT2G44010 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G59880.1); Has 18 Blast hits
to 18 proteins in 7 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 18; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.49 0.29 -0.31
29 AT1G77830 RING/U-box superfamily protein -0.48 0.31 -0.3
30 AT1G35480 transposable element gene -0.48 0.31 -0.3
31 AT4G03230 S-locus lectin protein kinase family protein -0.48 0.31 -0.31
32 AT3G18610 nucleolin like 2 nucleolin like 2, nucleolin like
2, PARALLEL1-LIKE 1		 -0.48 0.32 -0.29
33 AT4G16000 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G15990.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.47 0.31 -0.32
34 AT3G43860 glycosyl hydrolase 9A4 glycosyl hydrolase 9A4, glycosyl
hydrolase 9A4		 -0.47 0.33 -0.3
35 AT1G60030 nucleobase-ascorbate transporter 7 ARABIDOPSIS NUCLEOBASE-ASCORBATE
TRANSPORTER 7,
nucleobase-ascorbate transporter 7		 -0.47 0.31 -0.3
36 AT1G09220 Pentatricopeptide repeat (PPR) superfamily protein -0.45 0.33 -0.32
37 AT1G67020 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: leaf; Has 72
Blast hits to 72 proteins in 9 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 72; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 -0.45 0.33 -0.34
38 AT2G01510 Tetratricopeptide repeat (TPR)-like superfamily protein -0.45 0.32 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
39 C0088 FAD - FAD cytokinins degradation,
lysine degradation II,
valine degradation I,
isoleucine degradation I,
flavin biosynthesis I (bacteria and plants) 		0.82 0.44 -0.45 C0088
40 C0261 UDP-glucose - UDP-D-glucose quercetin glucoside biosynthesis (Arabidopsis),
abscisic acid glucose ester biosynthesis,
anthocyanin biosynthesis (delphinidin 3-O-glucoside),
UDP-glucose biosynthesis (from sucrose),
2,4,6-trinitrotoluene degradation,
galactose degradation I (Leloir pathway),
cytokinins-O-glucoside biosynthesis,
trehalose biosynthesis I,
dolichyl-diphosphooligosaccharide biosynthesis,
phenolic malonylglucosides biosynthesis,
callose biosynthesis,
superpathway of anthocyanin biosynthesis (from cyanidin and cyanidin 3-O-glucoside),
glucosinolate biosynthesis from hexahomomethionine,
coniferin metabolism,
glucosinolate biosynthesis from phenylalanine,
xyloglucan biosynthesis,
glucosinolate biosynthesis from pentahomomethionine,
anthocyanin biosynthesis (pelargonidin 3-O-glucoside, cyanidin 3-O-glucoside),
glucosinolate biosynthesis from dihomomethionine,
cellulose biosynthesis,
sinapate ester biosynthesis,
superpathway of IAA conjugate biosynthesis,
salicylate glucosides biosynthesis IV,
sucrose biosynthesis I,
glucosinolate biosynthesis from trihomomethionine,
tetrahydrofolate biosynthesis II,
sucrose degradation III,
UDP-D-xylose and UDP-D-glucuronate biosynthesis,
coumarin biosynthesis (via 2-coumarate),
superpathway of sucrose and starch metabolism I (non-photosynthetic tissue),
monolignol glucosides biosynthesis,
glucosinolate biosynthesis from homomethionine,
kaempferol glucoside biosynthesis (Arabidopsis),
salicylate glucosides biosynthesis III,
cytokinins 7-N-glucoside biosynthesis,
galactose degradation III,
cytokinins 9-N-glucoside biosynthesis,
glucosinolate biosynthesis from tryptophan,
UDP-galactose biosynthesis,
salicylate glucosides biosynthesis II,
stachyose degradation,
superpathway of sucrose and starch metabolism II (photosynthetic tissue),
UDP-glucose biosynthesis (from glucose 6-phosphate),
sphingolipid biosynthesis (plants),
glucosinolate biosynthesis from tetrahomomethionine,
galactose degradation II,
UDP-L-rhamnose biosynthesis 		0.82 0.44 -0.46 C0261
41 C0006 β-Homothreonine L-β-Homothreonine - - 0.81 0.44 -0.44
42 C0186 NAD - NAD+ ammonia assimilation cycle II,
aspartate degradation II,
adenosine nucleotides degradation I,
plant sterol biosynthesis II,
UDP-D-xylose and UDP-D-glucuronate biosynthesis,
NAD biosynthesis I (from aspartate),
ethanol degradation IV (peroxisomal),
abscisic acid biosynthesis,
palmitate biosynthesis II (bacteria and plants),
zeaxanthin biosynthesis,
sucrose degradation to ethanol and lactate (anaerobic),
glutamate degradation IV,
stearate biosynthesis II (plants),
guanosine nucleotides degradation II,
glutamate degradation I,
mannitol degradation II,
glycerol-3-phosphate shuttle,
2-ketoglutarate dehydrogenase complex,
arginine degradation I (arginase pathway),
aerobic respiration (alternative oxidase pathway),
branched-chain alpha-keto acid dehydrogenase complex,
4-aminobutyrate degradation IV,
glycolysis I,
glycine cleavage complex,
lysine degradation II,
fatty acid beta-oxidation II (core pathway),
nitrate reduction II (assimilatory),
TCA cycle variation V (plant),
leucine degradation I,
thiamine biosynthesis II,
acetaldehyde biosynthesis I,
sorbitol degradation I,
glutamine biosynthesis III,
aerobic respiration (cytochrome c),
ethanol degradation I,
ascorbate biosynthesis I (L-galactose pathway),
glycolysis IV (plant cytosol),
benzoate biosynthesis II (CoA-independent, non-beta-oxidative),
siroheme biosynthesis,
TCA cycle variation III (eukaryotic),
isoleucine degradation I,
pyridine nucleotide cycling (plants),
tyrosine biosynthesis I,
gluconeogenesis I,
glycine betaine biosynthesis III (plants),
traumatin and (Z)-3-hexen-1-yl acetate biosynthesis,
NAD/NADH phosphorylation and dephosphorylation,
guanosine nucleotides degradation I,
purine nucleotides de novo biosynthesis II,
acetyl-CoA biosynthesis (from pyruvate),
serine biosynthesis,
photorespiration,
histidine biosynthesis,
glyoxylate cycle,
jasmonic acid biosynthesis,
alanine degradation II (to D-lactate),
a ubiquinone + NADH + H+ -> a ubiquinol + NAD+,
putrescine degradation IV,
brassinosteroid biosynthesis III,
fatty acid elongation -- saturated,
pyruvate fermentation to ethanol II,
beta-alanine biosynthesis II,
4-hydroxybenzoate biosynthesis V,
plant sterol biosynthesis,
urate biosynthesis/inosine 5'-phosphate degradation,
phenylalanine degradation III,
glutamate biosynthesis IV,
leucine biosynthesis,
fatty acid alpha-oxidation,
a ubiquinone + NADH + H+ -> NAD+ + a ubiquinol,
Fe(III)-reduction and Fe(II) transport,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
phenylethanol biosynthesis,
pyruvate fermentation to lactate,
superpathway of glyoxylate cycle and fatty acid degradation,
fatty acid omega-oxidation,
galactose degradation III,
ethanol degradation II (cytosol),
sucrose biosynthesis I,
valine degradation I,
folate transformations II 		0.77 0.45 -0.44 C0186
43 C0262 UDP-glucuronic acid - UDP-D-glucuronate xylan biosynthesis,
UDP-D-glucuronate biosynthesis (from myo-inositol),
UDP-D-galacturonate biosynthesis I (from UDP-D-glucuronate),
UDP-D-apiose biosynthesis (from UDP-D-glucuronate),
galactose degradation III,
UDP-D-xylose and UDP-D-glucuronate biosynthesis 		0.76 0.44 -0.46 C0262
44 C0075 dGDP - dGDP purine nucleotide metabolism (phosphotransfer and nucleotide modification) 0.76 0.44 -0.44 C0075
45 C0030 3-Methylsulfinyl-n-propylglucosinolate - 3-Methylsulfinylpropyl-glucosinolate glucosinolate biosynthesis from homomethionine 0.75 0.46 -0.42 C0030
46 C0234 Sinapoyl glucose 1-O-Sinapoyl-β-D-glucose 1-O-Sinapoyl-β-D-glucose sinapate ester biosynthesis 0.74 0.45 -0.46 C0234
47 C0149 Mevalonolactone D,L-Mevalonolactone - terpenoid biosynthesis 0.74 0.45 -0.44
48 C0073 Cysteine L-Cysteine L-Cysteine alanine biosynthesis III,
cysteine biosynthesis I,
gamma-glutamyl cycle (plant pathway),
farnesylcysteine salvage pathway,
molybdenum cofactor biosynthesis,
thiamine biosynthesis II,
cyanide detoxification II,
indole glucosinolate breakdown (insect chewing induced),
glutathione degradation,
glutathione biosynthesis,
molybdenum cofactor biosynthesis II (eukaryotes),
cyanide degradation,
homocysteine and cysteine interconversion,
methionine biosynthesis II,
tRNA charging,
gamma-glutamyl cycle,
coenzyme A biosynthesis 		0.69 0.44 -0.45 C0073
49 C0011 N-Acetyl-glutamic acid N-Acetyl-D,L-glutamic acid N-Acetyl-L-glutamate arginine biosynthesis II (acetyl cycle),
ornithine biosynthesis 		0.68 0.43 -0.46 C0011
50 C0032 3-Phosphoglyceric acid 3-Phospho-(R)-glyceric acid 3-Phosphoglycerate glycolysis I,
gluconeogenesis I,
Calvin-Benson-Bassham cycle,
sucrose biosynthesis I,
serine biosynthesis,
photorespiration,
Rubisco shunt,
glycolysis IV (plant cytosol) 		0.67 0.42 -0.43 C0032
51 C0259 Tyramine - Tyramine hydroxycinnamic acid tyramine amides biosynthesis,
suberin biosynthesis 		0.66 0.31 -0.3 C0259
52 C0091 Fructose-1,6-bisphosphate D-Fructose-1,6-bisphosphate Fructose-1,6-bisphosphate gluconeogenesis I,
Calvin-Benson-Bassham cycle,
glycolysis IV (plant cytosol),
glycolysis I,
CA1P biosynthesis,
sucrose biosynthesis I 		0.65 0.4 -0.46 C0091
53 C0087 Erythrose-4-phosphate D-Erythrose-4-phosphate D-Erythrose-4-phosphate Rubisco shunt,
pentose phosphate pathway (non-oxidative branch),
chorismate biosynthesis,
Calvin-Benson-Bassham cycle 		0.65 0.45 -0.44 C0087
54 C0061 Aspartic acid L-Aspartic acid L-Aspartate purine nucleotide metabolism (phosphotransfer and nucleotide modification),
tRNA charging,
indole-3-acetyl-amino acid biosynthesis,
citrulline-nitric oxide cycle,
asparagine degradation I,
cyanide detoxification II,
asparagine biosynthesis I,
asparagine biosynthesis III (tRNA-dependent),
arginine biosynthesis I,
inosine-5'-phosphate biosynthesis II,
uridine-5'-phosphate biosynthesis,
aspartate biosynthesis,
homoserine biosynthesis,
lysine biosynthesis VI,
aspartate degradation II,
urea cycle,
purine nucleotides de novo biosynthesis II,
NAD biosynthesis I (from aspartate),
IAA degradation IV,
arginine biosynthesis II (acetyl cycle) 		0.59 0.32 -0.31 C0061
55 C0066 Choline - Choline choline biosynthesis III,
phosphatidylcholine biosynthesis I,
choline biosynthesis I,
glycine betaine biosynthesis III (plants),
choline biosynthesis II,
sinapate ester biosynthesis,
phospholipases 		0.58 0.32 -0.33 C0066
56 C0062 Betain - - - 0.56 0.31 -0.31