AT5G06600 : AtUBP12
Query Information
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AGICode AT5G06600
Description ubiquitin-specific protease 12
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT5G06600 ubiquitin-specific protease 12 AtUBP12, ubiquitin-specific
protease 12		 1 0.29 -0.31
2 AT1G06410 trehalose-phosphatase/synthase 7 trehalose-phosphatase/synthase 7,
ATTPSA, TREHALOSE -6-PHOSPHATASE
SYNTHASE S7,
trehalose-phosphatase/synthase 7		 0.82 0.32 -0.32
3 AT3G44940 Protein of unknown function (DUF1635) -0.81 0.32 -0.34
4 AT2G37520 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc
finger domain		 0.79 0.33 -0.34
5 AT4G11380 Adaptin family protein 0.78 0.35 -0.32
6 AT4G01810 Sec23/Sec24 protein transport family protein 0.78 0.31 -0.32
7 AT1G15780 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G10440.1); Has 103701 Blast
hits to 43153 proteins in 1828 species: Archae - 30;
Bacteria - 7385; Metazoa - 38639; Fungi - 11531; Plants -
7727; Viruses - 307; Other Eukaryotes - 38082 (source: NCBI
BLink).		 0.78 0.31 -0.31
8 AT2G39020 Acyl-CoA N-acyltransferases (NAT) superfamily protein 0.77 0.31 -0.32
9 AT4G01290 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 24 plant
structures; EXPRESSED DURING: 15 growth stages; Has 1744
Blast hits to 1308 proteins in 219 species: Archae - 0;
Bacteria - 241; Metazoa - 793; Fungi - 253; Plants - 108;
Viruses - 0; Other Eukaryotes - 349 (source: NCBI BLink).		 0.76 0.31 -0.31
10 AT1G21630 Calcium-binding EF hand family protein 0.75 0.32 -0.31
11 AT1G20110 RING/FYVE/PHD zinc finger superfamily protein 0.75 0.33 -0.3
12 AT4G32640 Sec23/Sec24 protein transport family protein 0.74 0.3 -0.32
13 AT3G14010 CTC-interacting domain 4 CTC-interacting domain 4 0.74 0.33 -0.3
14 AT1G15270 Translation machinery associated TMA7 0.74 0.32 -0.31
15 AT4G39630 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.73 0.33 -0.3
16 AT2G17040 NAC domain containing protein 36 NAC domain containing protein 36,
NAC domain containing protein 36		 -0.73 0.3 -0.31
17 AT4G08170 Inositol 1,3,4-trisphosphate 5/6-kinase family protein 0.73 0.31 -0.32
18 AT4G13730 Ypt/Rab-GAP domain of gyp1p superfamily protein 0.73 0.34 -0.33
19 AT1G65580 Endonuclease/exonuclease/phosphatase family protein FRAGILE FIBER3 0.73 0.32 -0.31
20 AT5G23450 long-chain base (LCB) kinase 1 long-chain base (LCB) kinase 1,
long-chain base (LCB) kinase 1		 0.73 0.3 -0.33
21 AT5G43130 TBP-associated factor 4 TBP-associated factor 4,
TBP-associated factor 4B		 0.73 0.32 -0.33
22 AT4G11160 Translation initiation factor 2, small GTP-binding protein 0.72 0.33 -0.31
23 AT5G13530 protein kinases;ubiquitin-protein ligases KEEP ON GOING 0.72 0.32 -0.32
24 AT3G61710 AUTOPHAGY 6 ATATG6, AtBECLIN1, AUTOPHAGY 6,
BECLIN1		 0.72 0.32 -0.32
25 AT4G13345 Serinc-domain containing serine and sphingolipid
biosynthesis protein		 maternal effect embryo arrest 55 0.72 0.33 -0.32
26 AT4G02290 glycosyl hydrolase 9B13 glycosyl hydrolase 9B13, glycosyl
hydrolase 9B13		 -0.72 0.3 -0.32
27 AT1G80690 PPPDE putative thiol peptidase family protein -0.72 0.33 -0.33
28 AT3G50590 Transducin/WD40 repeat-like superfamily protein 0.71 0.31 -0.32
29 AT2G07360 SH3 domain-containing protein 0.71 0.29 -0.31
30 AT1G30510 root FNR 2 root FNR 2, root FNR 2 -0.71 0.3 -0.32
31 AT2G47410 WD40/YVTN repeat-like-containing domain;Bromodomain 0.71 0.33 -0.31
32 AT3G19170 presequence protease 1 presequence protease 1, ATZNMP,
presequence protease 1		 0.71 0.28 -0.3
33 AT3G54260 TRICHOME BIREFRINGENCE-LIKE 36 TRICHOME BIREFRINGENCE-LIKE 36 -0.71 0.31 -0.32
34 AT1G01650 SIGNAL PEPTIDE PEPTIDASE-LIKE 4 ARABIDOPSIS THALIANA SIGNAL
PEPTIDE PEPTIDASE-LIKE 4, SIGNAL
PEPTIDE PEPTIDASE-LIKE 4		 0.71 0.29 -0.31
35 AT1G53050 Protein kinase superfamily protein 0.7 0.32 -0.32
36 AT3G58570 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.7 0.32 -0.32
37 AT5G19000 BTB-POZ and MATH domain 1 BTB-POZ AND MATH DOMAIN 1, BTB-POZ
and MATH domain 1		 0.7 0.34 -0.3
38 AT3G11650 NDR1/HIN1-like 2 NDR1/HIN1-like 2 -0.7 0.32 -0.31
39 AT2G27460 sec23/sec24 transport family protein 0.7 0.3 -0.32
40 AT5G06120 ARM repeat superfamily protein 0.7 0.31 -0.32
41 AT5G46620 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G17960.1); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 0.7 0.34 -0.29
42 AT5G13030 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Uncharacterised protein family UPF0061
(InterPro:IPR003846); Has 5046 Blast hits to 4997 proteins
in 1211 species: Archae - 8; Bacteria - 2327; Metazoa -
120; Fungi - 134; Plants - 48; Viruses - 0; Other
Eukaryotes - 2409 (source: NCBI BLink).		 0.7 0.32 -0.32
43 AT3G20290 EPS15 homology domain 1 EPS15 homology domain 1, EPS15
homology domain 1		 0.7 0.32 -0.3
44 AT1G16530 ASYMMETRIC LEAVES 2-like 9 ASYMMETRIC LEAVES 2-like 9, LOB
DOMAIN-CONTAINING PROTEIN 3		 -0.7 0.32 -0.32
45 AT4G34120 Cystathionine beta-synthase (CBS) family protein CBS domain containing protein 2,
CYSTATHIONE [BETA]-SYNTHASE
DOMAIN-CONTAINING PROTEIN 1, LOSS
OF THE TIMING OF ET AND JA
BIOSYNTHESIS 1		 0.7 0.32 -0.3
46 AT2G36850 glucan synthase-like 8 GLUCAN SYNTHASE-LIKE 8, ATGSL8,
CHORUS, GSL08, glucan
synthase-like 8		 0.7 0.34 -0.3
47 AT1G67960 CONTAINS InterPro DOMAIN/s: Membrane protein,Tapt1/CMV
receptor (InterPro:IPR008010); Has 447 Blast hits to 428
proteins in 176 species: Archae - 0; Bacteria - 0; Metazoa
- 190; Fungi - 133; Plants - 49; Viruses - 0; Other
Eukaryotes - 75 (source: NCBI BLink).		 POLLEN DEFECTIVE IN GUIDANCE 1 0.69 0.32 -0.32
48 AT1G31320 LOB domain-containing protein 4 LOB domain-containing protein 4 -0.69 0.32 -0.32
49 AT3G51550 Malectin/receptor-like protein kinase family protein FERONIA 0.69 0.34 -0.32
50 AT1G07160 Protein phosphatase 2C family protein 0.69 0.33 -0.32
51 AT5G65620 Zincin-like metalloproteases family protein 0.69 0.32 -0.3
52 AT5G04410 NAC domain containing protein 2 Arabidopsis NAC domain containing
protein 78, NAC domain containing
protein 2		 0.69 0.34 -0.31
53 AT1G55325 RNA polymerase II transcription mediators GRAND CENTRAL, MACCHI-BOU 2 0.68 0.31 -0.31
54 AT1G66340 Signal transduction histidine kinase, hybrid-type, ethylene
sensor		 AtETR1, ETHYLENE INSENSITIVE 1,
ETHYLENE RESPONSE, ETHYLENE
RESPONSE 1		 0.68 0.3 -0.3
55 AT5G64440 fatty acid amide hydrolase fatty acid amide hydrolase, fatty
acid amide hydrolase		 0.68 0.33 -0.32
56 AT2G46020 transcription regulatory protein SNF2, putative ARABIDOPSIS THALIANA BRAHMA,
BRAHMA, CHA2, CHROMATIN REMODELING
2		 0.68 0.33 -0.32
57 AT5G51300 splicing factor-related 0.68 0.31 -0.32
58 AT3G20910 nuclear factor Y, subunit A9 nuclear factor Y, subunit A9 0.68 0.31 -0.32
59 AT5G28630 glycine-rich protein -0.67 0.3 -0.3
60 AT3G51120 DNA binding;zinc ion binding;nucleic acid binding;nucleic
acid binding		 0.67 0.33 -0.34
61 AT5G58410 HEAT/U-box domain-containing protein 0.67 0.32 -0.31
62 AT2G39720 RING-H2 finger C2A RING-H2 finger C2A 0.67 0.33 -0.33
63 AT1G24490 OxaA/YidC-like membrane insertion protein ALBINA 4, ARABIDOPSIS THALIANA
ENVELOPE MEMBRANE INTEGRASE		 0.67 0.31 -0.33
64 AT5G25130 cytochrome P450, family 71, subfamily B, polypeptide 12 cytochrome P450, family 71,
subfamily B, polypeptide 12		 -0.67 0.3 -0.31
65 AT5G01290 mRNA capping enzyme family protein 0.67 0.3 -0.3
66 AT4G38600 HEAT repeat ;HECT-domain (ubiquitin-transferase) KAKTUS, UBIQUITIN-PROTEIN LIGASE 3 0.67 0.31 -0.31
67 AT1G47210 cyclin-dependent protein kinase 3;2 cyclin-dependent protein kinase
3;2		 -0.67 0.31 -0.32
68 AT1G72390 CONTAINS InterPro DOMAIN/s: Spt20 family
(InterPro:IPR021950); Has 8778 Blast hits to 7244 proteins
in 477 species: Archae - 6; Bacteria - 326; Metazoa - 4198;
Fungi - 1506; Plants - 923; Viruses - 22; Other Eukaryotes
- 1797 (source: NCBI BLink).		 0.66 0.31 -0.32
69 AT5G23110 Zinc finger, C3HC4 type (RING finger) family protein 0.66 0.33 -0.31
70 AT4G17140 pleckstrin homology (PH) domain-containing protein 0.66 0.33 -0.32
71 AT5G56620 NAC domain containing protein 99 NAC domain containing protein 99,
NAC domain containing protein 99		 -0.66 0.3 -0.35
72 AT4G14220 RING-H2 group F1A RING-H2 group F1A 0.66 0.32 -0.32
73 AT2G20580 26S proteasome regulatory subunit S2 1A 26S PROTEASOME REGULATORY SUBUNIT
S2 1A, 26S proteasome regulatory
subunit S2 1A		 0.66 0.31 -0.32
74 AT1G61840 Cysteine/Histidine-rich C1 domain family protein -0.66 0.31 -0.31
75 AT2G46520 cellular apoptosis susceptibility protein, putative /
importin-alpha re-exporter, putative		 0.66 0.3 -0.32
76 AT1G74250 DNAJ heat shock N-terminal domain-containing protein 0.66 0.3 -0.32
77 AT5G42390 Insulinase (Peptidase family M16) family protein stromal processing peptidase 0.66 0.33 -0.31
78 AT2G33790 arabinogalactan protein 30 arabinogalactan protein 30,
ATAGP30		 -0.66 0.31 -0.3
79 AT1G08090 nitrate transporter 2:1 ACH1, NITRATE TRANSPORTER 2.1,
nitrate transporter 2:1, LATERAL
ROOT INITIATION 1, NITRATE
TRANSPORTER 2, NITRATE TRANSPORTER
2.1, nitrate transporter 2:1,
NRT2;1AT		 -0.66 0.33 -0.31
80 AT4G25970 phosphatidylserine decarboxylase 3 phosphatidylserine decarboxylase 3 0.66 0.33 -0.31
81 AT5G15400 U-box domain-containing protein 0.66 0.33 -0.31
82 AT5G47480 RGPR-related 0.66 0.3 -0.32
83 AT2G01670 nudix hydrolase homolog 17 nudix hydrolase homolog 17, nudix
hydrolase homolog 17		 -0.66 0.34 -0.32
84 AT3G07410 RAB GTPase homolog A5B RAB GTPase homolog A5B, RAB GTPase
homolog A5B		 -0.65 0.31 -0.28
85 AT3G52640 Zn-dependent exopeptidases superfamily protein 0.65 0.32 -0.32
86 AT3G12670 CTP synthase family protein embryo defective 2742 0.65 0.34 -0.3
87 AT4G03390 STRUBBELIG-receptor family 3 STRUBBELIG-receptor family 3 0.65 0.31 -0.31
88 AT3G15430 Regulator of chromosome condensation (RCC1) family protein 0.65 0.31 -0.34
89 AT1G31730 Adaptin family protein 0.65 0.32 -0.31
90 AT2G07180 Protein kinase superfamily protein -0.65 0.32 -0.31
91 AT5G47260 ATP binding;GTP binding;nucleotide
binding;nucleoside-triphosphatases		 -0.65 0.33 -0.34
92 AT3G18710 plant U-box 29 ARABIDOPSIS THALIANA PLANT U-BOX
29, plant U-box 29		 -0.64 0.32 -0.32
93 AT1G13470 Protein of unknown function (DUF1262) -0.64 0.3 -0.3
94 AT4G23496 SPIRAL1-like5 SPIRAL1-like5 -0.64 0.31 -0.31
95 AT2G03090 expansin A15 ATEXP15, expansin A15, ATHEXP
ALPHA 1.3, EXPANSIN 15, expansin
A15		 -0.63 0.32 -0.32
96 AT3G03320 RNA-binding ASCH domain protein -0.63 0.31 -0.32
97 AT5G08480 VQ motif-containing protein -0.63 0.31 -0.3
98 AT2G42100 Actin-like ATPase superfamily protein -0.63 0.33 -0.34
99 AT1G70710 glycosyl hydrolase 9B1 glycosyl hydrolase 9B1, CELLULASE
1, glycosyl hydrolase 9B1		 -0.62 0.31 -0.31
100 AT2G38970 Zinc finger (C3HC4-type RING finger) family protein -0.62 0.32 -0.33
101 AT1G68430 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G66890.1); Has 35 Blast
hits to 35 proteins in 6 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.62 0.3 -0.31
102 AT4G37770 1-amino-cyclopropane-1-carboxylate synthase 8 1-amino-cyclopropane-1-carboxylate
synthase 8		 -0.62 0.32 -0.31
103 AT1G30515 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 16 plant structures;
EXPRESSED DURING: 6 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT4G21740.1); Has 20 Blast hits to 20 proteins in 4
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.6 0.33 -0.31
104 AT5G40250 RING/U-box superfamily protein -0.6 0.31 -0.31
105 AT1G28400 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT2G33850.1); Has 45374 Blast hits to 18870 proteins
in 668 species: Archae - 72; Bacteria - 1460; Metazoa -
1191; Fungi - 1038; Plants - 174; Viruses - 64; Other
Eukaryotes - 41375 (source: NCBI BLink).		 -0.6 0.3 -0.32
106 AT5G59990 CCT motif family protein -0.6 0.3 -0.3
107 AT3G30150 transposable element gene -0.6 0.3 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
108 C0110 Guanosine - Guanosine guanosine nucleotides degradation I,
guanine and guanosine salvage II,
guanosine nucleotides degradation II,
guanine and guanosine salvage III 		0.69 0.44 -0.46 C0110
109 C0117 Hydroxyproline (2S,4R)-Hydroxyproline 4-Hydroxy-L-proline protein precursor 0.66 0.45 -0.44 C0117