AT5G03740 : histone deacetylase 2C

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AGICode	AT5G03740
Description	histone deacetylase 2C

Gene information

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	Gene Code	Description / Information	Gene name	Correlation				link
	Gene Code	Description / Information	Gene name	pcc	2.5%	97.5%	PPI	link
1	AT5G03740	histone deacetylase 2C	histone deacetylase 2C, HISTONE DEACETYLASE 3	1	0.32	-0.32
2	AT4G24440	transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)		0.84	0.32	-0.3
3	AT3G18165	modifier of snc1,4	Modifier of snc1,4	0.83	0.32	-0.31
4	AT4G31985	Ribosomal protein L39 family protein		0.83	0.33	-0.34
5	AT4G13940	S-adenosyl-L-homocysteine hydrolase	S-ADENOSYL-L-HOMOCYSTEIN HYDROLASE 1, EMBRYO DEFECTIVE 1395, HOMOLOGY-DEPENDENT GENE SILENCING 1, MATERNAL EFFECT EMBRYO ARREST 58, S-ADENOSYL-L-HOMOCYSTEIN HYDROLASE 1	0.83	0.32	-0.33
6	AT1G22920	COP9 signalosome 5A	ARABIDOPSIS JAB1 HOMOLOG 1, COP9 signalosome 5A, JAB1	0.81	0.32	-0.32
7	AT5G58230	Transducin/WD40 repeat-like superfamily protein	ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, MATERNAL EFFECT EMBRYO ARREST 70, MULTICOPY SUPRESSOR OF IRA1	0.81	0.3	-0.33
8	AT4G39920	C-CAP/cofactor C-like domain-containing protein	PORCINO, TUBULIN-FOLDING COFACTOR C	0.81	0.3	-0.31
9	AT1G54770	Fcf2 pre-rRNA processing protein		0.8	0.33	-0.32
10	AT4G31580	serine/arginine-rich 22	RS-containing zinc finger protein 22, RS-containing zinc finger protein 22, RS-CONTAINING ZINC FINGER PROTEIN 22, serine/arginine-rich 22, SRZ22	0.8	0.31	-0.35
11	AT3G07230	wound-responsive protein-related		0.79	0.3	-0.32
12	AT2G16500	arginine decarboxylase 1	arginine decarboxylase 1, ARGDC, ARGDC1, SPE1	0.79	0.32	-0.3
13	AT3G46830	RAB GTPase homolog A2C	ARABIDOPSIS RAB GTPASE HOMOLOG A2C, ATRAB11A, RAB GTPase homolog A2C, RAB GTPASE HOMOLOG A2C, RAB GTPase homolog A2C	0.79	0.32	-0.33
14	AT2G19540	Transducin family protein / WD-40 repeat family protein		0.79	0.33	-0.3
15	AT3G18740	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	receptor-like kinase 902	0.79	0.31	-0.3
16	AT2G34570	PIN domain-like family protein	maternal effect embryo arrest 21	0.78	0.3	-0.33
17	AT5G57280	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	root initiation defective 2	0.78	0.29	-0.28
18	AT2G33845	Nucleic acid-binding, OB-fold-like protein		0.78	0.31	-0.32
19	AT3G25940	TFIIB zinc-binding protein		0.77	0.31	-0.31
20	AT1G71430	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 64 Blast hits to 64 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 6; Plants - 42; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).		0.77	0.34	-0.32
21	AT5G23050	acyl-activating enzyme 17	acyl-activating enzyme 17	-0.77	0.35	-0.32
22	AT2G32220	Ribosomal L27e protein family		0.77	0.32	-0.32
23	AT4G29390	Ribosomal protein S30 family protein		0.77	0.32	-0.29
24	AT1G01940	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein		0.77	0.33	-0.31
25	AT1G10590	Nucleic acid-binding, OB-fold-like protein		0.76	0.31	-0.32
26	AT3G04130	Tetratricopeptide repeat (TPR)-like superfamily protein		0.76	0.31	-0.33
27	AT2G46170	Reticulon family protein		0.76	0.29	-0.31
28	AT3G22320	Eukaryotic rpb5 RNA polymerase subunit family protein	ATRPABC24.3, NRPB5, NRPD5, RNA POLYMERASE II FIFTH LARGEST SUBUNIT, A	0.75	0.31	-0.32
29	AT2G04520	Nucleic acid-binding, OB-fold-like protein		0.75	0.33	-0.31
30	AT2G43770	Transducin/WD40 repeat-like superfamily protein		0.75	0.32	-0.31
31	AT1G64350	Transducin/WD40 repeat-like superfamily protein	SEH1H	0.75	0.34	-0.32
32	AT2G17360	Ribosomal protein S4 (RPS4A) family protein		0.75	0.3	-0.32
33	AT4G00170	Plant VAMP (vesicle-associated membrane protein) family protein		0.74	0.32	-0.33
34	AT2G17670	Tetratricopeptide repeat (TPR)-like superfamily protein		0.74	0.33	-0.33
35	AT3G61140	26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain	ARABIDOPSIS THALIANA FUSCA 6, SHAGGY-LIKE KINASE 31, CONSTITUTIVE PHOTOMORPHOGENIC 11, COP9 SIGNALOSOME SUBUNIT 1, EMBRYO DEFECTIVE 78, FUSCA 6, SHAGGY-LIKE KINASE 31	0.74	0.33	-0.31
36	AT4G02230	Ribosomal protein L19e family protein		0.74	0.31	-0.31
37	AT1G26850	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		0.73	0.31	-0.31
38	AT4G24940	SUMO-activating enzyme 1A	AT-SAE1-1, SUMO-ACTIVATING ENZYME 1A, SUMO-activating enzyme 1A	0.73	0.28	-0.33
39	AT5G63200	tetratricopeptide repeat (TPR)-containing protein		-0.73	0.31	-0.33
40	AT1G07570	Protein kinase superfamily protein	APK1, APK1A	0.72	0.31	-0.32
41	AT5G41685	Mitochondrial outer membrane translocase complex, subunit Tom7		0.72	0.31	-0.33
42	AT1G77570	Winged helix-turn-helix transcription repressor DNA-binding		0.72	0.31	-0.31
43	AT5G41950	Tetratricopeptide repeat (TPR)-like superfamily protein		0.72	0.3	-0.34
44	AT3G12180	Cornichon family protein		0.72	0.3	-0.32
45	AT1G68710	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein		-0.71	0.31	-0.29
46	AT3G50220	Protein of unknown function (DUF579)	IRREGULAR XYLEM 15	-0.69	0.33	-0.31
47	AT3G10420	P-loop containing nucleoside triphosphate hydrolases superfamily protein	SEEDLING PLASTID DEVELOPMENT 1	-0.68	0.31	-0.31
48	AT5G07890	myosin heavy chain-related		-0.68	0.31	-0.33
49	AT5G01770	HEAT repeat ;WD domain, G-beta repeat protein protein	ATRAPTOR1A, RAPTOR1A, RAPTOR2	-0.67	0.29	-0.31
50	AT2G31960	glucan synthase-like 3	glucan synthase-like 3, ATGSL3, GSL03, glucan synthase-like 3	-0.66	0.32	-0.3
51	AT2G35950	embryo sac development arrest 12	embryo sac development arrest 12	-0.65	0.3	-0.32
52	AT5G46400	Tetratricopeptide repeat (TPR)-like superfamily protein	AT PRP39-2, PRP39-2	-0.64	0.32	-0.3
53	AT2G22310	ubiquitin-specific protease 4	ubiquitin-specific protease 4, ubiquitin-specific protease 4	-0.64	0.29	-0.3
54	AT2G20770	GCR2-like 2	GCR2-like 2	-0.64	0.31	-0.31
55	AT2G15440	Protein of unknown function (DUF579)		-0.64	0.31	-0.31
56	AT3G14670	unknown protein; Has 70811 Blast hits to 32163 proteins in 1591 species: Archae - 181; Bacteria - 15342; Metazoa - 24728; Fungi - 6779; Plants - 2998; Viruses - 578; Other Eukaryotes - 20205 (source: NCBI BLink).		-0.63	0.33	-0.3
57	AT3G15280	unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, 4 anthesis, petal differentiation and expansion stage; Has 36 Blast hits to 36 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).		-0.62	0.32	-0.31
58	AT1G02120	GRAM domain family protein	VASCULAR ASSOCIATED DEATH1	-0.6	0.33	-0.32
59	AT5G39910	Pectin lyase-like superfamily protein		-0.59	0.32	-0.31
60	AT1G21430	Flavin-binding monooxygenase family protein	YUC11	-0.59	0.3	-0.32
61	AT5G09930	ABC transporter family protein	ATP-binding cassette F2	-0.59	0.32	-0.34
62	AT5G54350	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT5G54360.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).		-0.58	0.3	-0.32
63	AT1G33813	transposable element gene		-0.58	0.32	-0.32
64	AT3G43280	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19240.1); Has 5 Blast hits to 5 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).		-0.58	0.32	-0.3
65	AT1G54230	Winged helix-turn-helix transcription repressor DNA-binding		-0.58	0.33	-0.3

Metabolite information

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	CID	Metabolite name			Pathway Information	Correlation				link
	CID	Compound name	Stereochemistry	Aracyc name	Pathway Information	pcc	2.5%	97.5%	PPI	link
66	C0054	Agmatine	-	Agmatine	putrescine biosynthesis I, putrescine biosynthesis II, superpathway of polyamine biosynthesis	-0.7	0.31	-0.29
67	C0137	Leucine	L-Leucine	L-Leucine	indole-3-acetyl-amino acid biosynthesis, leucine biosynthesis, jasmonoyl-amino acid conjugates biosynthesis I, IAA biosynthesis II, tRNA charging, leucine degradation I	-0.62	0.32	-0.3
68	C0022	1,4-Butanediamine	-	Putrescine	spermine and spermidine degradation III, putrescine degradation IV, superpathway of polyamine biosynthesis, putrescine biosynthesis II, spermidine biosynthesis I, putrescine biosynthesis I	-0.62	0.3	-0.32
69	C0097	Glucosamine-6-phosphate	D-Glucosamine-6-phosphate	D-Glucosamine-6-phosphate	UDP-N-acetyl-D-glucosamine biosynthesis II	-0.62	0.34	-0.31

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