AT3G62330 : -
Query Information
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AGICode AT3G62330
Description Zinc knuckle (CCHC-type) family protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G62330 Zinc knuckle (CCHC-type) family protein 1 0.35 -0.32
2 AT4G29610 Cytidine/deoxycytidylate deaminase family protein -0.75 0.32 -0.31
3 AT5G25370 phospholipase D alpha 3 phospholipase D alpha 3 -0.75 0.33 -0.33
4 AT2G42450 alpha/beta-Hydrolases superfamily protein 0.73 0.31 -0.33
5 AT5G15170 tyrosyl-DNA phosphodiesterase-related tyrosyl-DNA phosphodiesterase 1 0.73 0.29 -0.32
6 AT5G61210 soluble N-ethylmaleimide-sensitive factor adaptor protein
33		 ATSNAP33, ATSNAP33B, soluble
N-ethylmaleimide-sensitive factor
adaptor protein 33, SNP33		 -0.73 0.34 -0.31
7 AT3G12950 Trypsin family protein 0.71 0.33 -0.31
8 AT1G18280 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.7 0.32 -0.31
9 AT1G59830 protein phosphatase 2A-2 protein phosphatase 2A-2 -0.7 0.33 -0.33
10 AT1G11090 alpha/beta-Hydrolases superfamily protein -0.7 0.31 -0.3
11 AT2G20210 RNI-like superfamily protein -0.69 0.3 -0.31
12 AT4G32950 Protein phosphatase 2C family protein -0.69 0.29 -0.32
13 AT3G11240 arginine-tRNA protein transferase 2 ATATE2, arginine-tRNA protein
transferase 2		 0.69 0.3 -0.3
14 AT4G07790 transposable element gene -0.69 0.31 -0.32
15 AT4G00340 receptor-like protein kinase 4 receptor-like protein kinase 4 0.68 0.31 -0.3
16 AT2G14830 Regulator of Vps4 activity in the MVB pathway protein -0.68 0.33 -0.31
17 AT1G73970 unknown protein; Has 34 Blast hits to 33 proteins in 15
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 32; Viruses - 0; Other Eukaryotes - 2 (source:
NCBI BLink).		 0.68 0.32 -0.32
18 AT1G33460 transposable element gene -0.67 0.3 -0.32
19 AT1G54720 early-responsive to dehydration protein-related / ERD
protein-related		 0.67 0.31 -0.33
20 AT5G49945 Protein of unknown function (DUF1682) -0.67 0.33 -0.32
21 AT4G31760 Peroxidase superfamily protein 0.67 0.32 -0.32
22 AT3G49830 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.67 0.32 -0.32
23 AT1G28580 GDSL-like Lipase/Acylhydrolase superfamily protein 0.67 0.32 -0.31
24 AT5G05270 Chalcone-flavanone isomerase family protein -0.67 0.34 -0.33
25 AT1G55450 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.66 0.33 -0.32
26 AT4G17760 damaged DNA binding;exodeoxyribonuclease IIIs -0.66 0.32 -0.31
27 AT2G46600 Calcium-binding EF-hand family protein -0.66 0.29 -0.28
28 AT1G37150 holocarboxylase synthetase 2 holocarboxylase synthetase 2 0.66 0.33 -0.3
29 AT2G23480 transposable element gene -0.66 0.31 -0.31
30 AT5G58070 temperature-induced lipocalin TEMPERATURE-INDUCED LIPOCALIN,
temperature-induced lipocalin		 -0.66 0.31 -0.33
31 AT2G07000 unknown protein; Has 1 Blast hits to 1 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.66 0.33 -0.32
32 AT5G01960 RING/U-box superfamily protein -0.66 0.32 -0.3
33 AT1G71000 Chaperone DnaJ-domain superfamily protein -0.66 0.32 -0.31
34 AT3G29690 HXXXD-type acyl-transferase family protein -0.65 0.32 -0.3
35 AT1G49370 pseudogene, similar to OSJNBa0072F16.8, blastp match of 42%
identity and 6.6e-73 P-value to
GP|21739229|emb|CAD40984.1||AL606460 OSJNBa0072F16.8 {Oryza
sativa (japonica cultivar-group)}		 0.65 0.33 -0.3
36 AT1G31910 GHMP kinase family protein 0.65 0.31 -0.33
37 AT1G80810 Tudor/PWWP/MBT superfamily protein -0.65 0.33 -0.35
38 AT4G16515 Encodes a root meristem growth factor (RGF). Belongs to a
family of functionally redundant homologous peptides that
are secreted, tyrosine-sulfated, and expressed mainly in
the stem cell area and the innermost layer of central
columella cells. RGFs are required for maintenance of the
root stem cell niche and transit amplifying cell
proliferation. Members of this family include: At5g60810
(RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350
(RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240
(RGF7), At2g03830 (RGF8) and At5g64770 (RGF9).		 root meristem growth factor 6 -0.65 0.3 -0.32
39 AT3G20620 F-box family protein-related 0.65 0.32 -0.33
40 AT1G65940 pseudogene, similar to Dof zinc finger protein, blastp
match of 61% identity and 1.7e-10 P-value to
GP|4996646|dbj|BAA78575.1||AB028132 Dof zinc finger protein
{Oryza sativa}		 -0.65 0.32 -0.33
41 AT5G58910 laccase 16 laccase 16 -0.65 0.32 -0.31
42 AT2G43420 3-beta hydroxysteroid dehydrogenase/isomerase family
protein		 0.65 0.3 -0.31
43 AT3G29670 HXXXD-type acyl-transferase family protein phenolic glucoside
malonyltransferase 2		 -0.65 0.31 -0.32
44 AT1G52840 transposable element gene -0.64 0.3 -0.31
45 AT1G71750 Hypoxanthine-guanine phosphoribosyltransferase Hypoxanthine-guanine
phosphoribosyltransferase		 -0.64 0.32 -0.31
46 AT1G28030 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.64 0.31 -0.3
47 AT1G53345 unknown protein; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant
structures; EXPRESSED DURING: 4 anthesis, F mature embryo
stage, petal differentiation and expansion stage, E
expanded cotyledon stage, D bilateral stage; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT5G09580.1); Has 201 Blast hits to 201 proteins in
75 species: Archae - 6; Bacteria - 102; Metazoa - 2; Fungi
- 0; Plants - 47; Viruses - 7; Other Eukaryotes - 37
(source: NCBI BLink).		 -0.64 0.31 -0.32
48 AT3G13662 Disease resistance-responsive (dirigent-like protein)
family protein		 -0.64 0.33 -0.31
49 AT4G39780 Integrase-type DNA-binding superfamily protein 0.64 0.32 -0.31
50 AT2G28960 Leucine-rich repeat protein kinase family protein -0.64 0.32 -0.33
51 AT3G06650 ATP-citrate lyase B-1 ATP-citrate lyase B-1 -0.64 0.3 -0.32
52 AT3G55580 Regulator of chromosome condensation (RCC1) family protein -0.64 0.29 -0.32
53 AT2G04940 scramblase-related 0.64 0.33 -0.31
54 AT4G20290 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.63 0.32 -0.32
55 AT3G19340 Protein of unknown function (DUF3754) -0.63 0.32 -0.32
56 AT1G49100 Leucine-rich repeat protein kinase family protein -0.63 0.32 -0.3
57 AT2G27350 OTU-like cysteine protease family protein otubain-like deubiquitinase 1 0.63 0.3 -0.3
58 AT1G64890 Major facilitator superfamily protein -0.63 0.3 -0.31
59 AT5G15490 UDP-glucose 6-dehydrogenase family protein UDP-glucose dehydrogenase 3 -0.63 0.32 -0.31
60 AT1G18970 germin-like protein 4 germin-like protein 4 -0.63 0.28 -0.32
61 AT5G42140 Regulator of chromosome condensation (RCC1) family with
FYVE zinc finger domain		 -0.63 0.32 -0.32
62 AT2G37720 TRICHOME BIREFRINGENCE-LIKE 15 TRICHOME BIREFRINGENCE-LIKE 15 -0.63 0.3 -0.31
63 AT4G10370 Cysteine/Histidine-rich C1 domain family protein -0.63 0.31 -0.31
64 AT3G02130 receptor-like protein kinase 2 clv3 peptide insensitive 1,
receptor-like protein kinase 2,
TOADSTOOL 2		 -0.63 0.28 -0.34
65 AT4G14815 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.63 0.32 -0.32
66 AT3G61640 arabinogalactan protein 20 arabinogalactan protein 20,
Arabinogalactan protein 20		 -0.62 0.31 -0.3
67 AT2G40620 Basic-leucine zipper (bZIP) transcription factor family
protein		 -0.62 0.32 -0.31
68 AT1G47790 F-box and associated interaction domains-containing protein -0.62 0.31 -0.31
69 AT3G17130 Plant invertase/pectin methylesterase inhibitor superfamily
protein		 -0.62 0.33 -0.31
70 AT2G33240 myosin XI D MYOSIN XI D, myosin XI D -0.62 0.33 -0.32
71 AT3G04200 RmlC-like cupins superfamily protein 0.62 0.32 -0.32
72 AT1G48980 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.62 0.31 -0.33
73 AT4G10790 UBX domain-containing protein -0.62 0.29 -0.32
74 AT1G52660 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.62 0.29 -0.32
75 AT4G35930 F-box family protein -0.62 0.31 -0.32
76 AT5G45830 delay of germination 1 ATDOG1, DELAY OF GERMINATION 1,
GLUCOSE SENSING QTL 5		 -0.62 0.34 -0.32
77 AT1G26310 K-box region and MADS-box transcription factor family
protein 		AGAMOUS-like 10, CAULIFLOWER, CAL1 -0.62 0.3 -0.31
78 AT1G71990 fucosyltransferase 13 ARABIDOPSIS FUCOSYLTRANSFERASE 4,
ATFUT13, FT4-M, FUCTC,
fucosyltransferase 13		 0.61 0.32 -0.3
79 AT5G65540 unknown protein; Has 6825 Blast hits to 3811 proteins in
289 species: Archae - 0; Bacteria - 184; Metazoa - 2139;
Fungi - 760; Plants - 816; Viruses - 52; Other Eukaryotes -
2874 (source: NCBI BLink).		 -0.61 0.3 -0.3
80 AT1G61750 Receptor-like protein kinase-related family protein -0.61 0.34 -0.31
81 AT5G09950 Tetratricopeptide repeat (TPR)-like superfamily protein -0.61 0.32 -0.32
82 AT1G69690 TCP family transcription factor AtTCP15, TEOSINTE
BRANCHED1/CYCLOIDEA/PCF 15		 -0.61 0.33 -0.32
83 AT3G13520 arabinogalactan protein 12 arabinogalactan protein 12,
ATAGP12		 -0.61 0.31 -0.31
84 AT5G39850 Ribosomal protein S4 0.61 0.32 -0.33
85 AT1G13020 eukaryotic initiation factor 4B2 eukaryotic initiation factor 4B2 -0.61 0.29 -0.3
86 AT3G15890 Protein kinase superfamily protein -0.61 0.34 -0.3
87 AT1G06040 B-box zinc finger family protein B-box domain protein 24, SALT
TOLERANCE		 -0.61 0.33 -0.32
88 AT3G17620 F-box and associated interaction domains-containing protein -0.61 0.31 -0.31
89 AT1G67570 Protein of unknown function (DUF3537) 0.61 0.32 -0.31
90 AT2G19250 pseudogene, similar to Magnesium-chelatase subunit chlD,
chloroplast precursor (Mg- protoporphyrin IX chelatase)
(Mg-chelatase subunit D). (Common tobacco), similar to
SP|O24133 Magnesium-chelatase subunit chlD, chloroplast
precursor (Mg-protoporphyrin IX chelatase) (Mg-chelatase
subunit D) {Nicotiana tabacum}; blastp match of 78%
identity and 5.0e-07 P-value to SP|O24133|CHLD_TOBAC
Magnesium-chelatase subunit chlD, chloroplast precursor
(Mg- protoporphyrin IX chelatase) (Mg-chelatase subunit D).
(Common tobacco) {Nicotiana tabacum}		 0.61 0.33 -0.31
91 AT1G78070 Transducin/WD40 repeat-like superfamily protein -0.61 0.31 -0.34
92 AT5G19810 Proline-rich extensin-like family protein -0.6 0.32 -0.3
93 AT5G47560 tonoplast dicarboxylate transporter ATSDAT, TONOPLAST DICARBOXYLATE
TRANSPORTER, tonoplast
dicarboxylate transporter		 0.6 0.31 -0.33
94 AT1G13560 aminoalcoholphosphotransferase 1 aminoalcoholphosphotransferase 1,
ATAAPT1		 -0.6 0.31 -0.32
95 AT1G78440 Arabidopsis thaliana gibberellin 2-oxidase 1 Arabidopsis thaliana gibberellin
2-oxidase 1, gibberellin 2-oxidase
1		 -0.6 0.31 -0.31
96 AT1G23880 NHL domain-containing protein 0.6 0.32 -0.33
97 AT5G15470 galacturonosyltransferase 14 galacturonosyltransferase 14 -0.6 0.33 -0.3
98 AT2G35700 ERF family protein 38 ERF FAMILY PROTEIN 38, ERF family
protein 38		 -0.6 0.3 -0.32
99 AT4G37445 BEST Arabidopsis thaliana protein match is: Calcium-binding
EF hand family protein (TAIR:AT1G64850.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.6 0.3 -0.33
100 AT2G28200 C2H2-type zinc finger family protein 0.6 0.32 -0.33
101 AT1G07360 CCCH-type zinc fingerfamily protein with RNA-binding domain MOS4-associated complex subunit 5A -0.6 0.31 -0.3
102 AT1G69570 Dof-type zinc finger DNA-binding family protein -0.6 0.3 -0.32
103 AT5G28560 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
vacuole; Has 0 Blast hits to 0 proteins in 0 species
(source: NCBI BLink).		 -0.6 0.31 -0.33
104 AT5G48390 Tetratricopeptide repeat (TPR)-like superfamily protein ATZIP4 -0.6 0.29 -0.31
105 AT3G17900 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; Has 45
Blast hits to 44 proteins in 14 species: Archae - 0;
Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 39; Viruses
- 0; Other Eukaryotes - 2 (source: NCBI BLink).		 -0.6 0.33 -0.3
106 AT1G55880 Pyridoxal-5'-phosphate-dependent enzyme family protein 0.6 0.34 -0.31
107 AT1G21120 O-methyltransferase family protein indole glucosinolate
O-methyltransferase 2		 -0.6 0.33 -0.37
108 AT4G27220 NB-ARC domain-containing disease resistance protein 0.6 0.32 -0.3
109 AT4G39800 myo-inositol-1-phosphate synthase 1 INOSITOL 3-PHOSPHATE SYNTHASE 1,
MYO-INOSITOL-1-PHOSPHATE SYNTHASE
1, MI-1-P SYNTHASE, D-myo-Inositol
3-Phosphate Synthase 1,
myo-inositol-1-phosphate synthase
1		 -0.6 0.32 -0.31
110 AT3G56700 fatty acid reductase 6 AtFAR6, fatty acid reductase 6 -0.59 0.34 -0.3
111 AT1G21920 Histone H3 K4-specific methyltransferase SET7/9 family
protein		 0.59 0.34 -0.34
112 AT5G05460 Glycosyl hydrolase family 85 AtENGase85A,
Endo-beta-N-acetyglucosaminidase
85A		 0.59 0.33 -0.33
113 AT1G16150 wall associated kinase-like 4 wall associated kinase-like 4 -0.59 0.3 -0.32
114 AT4G25610 C2H2-like zinc finger protein -0.59 0.34 -0.32
115 AT4G15480 UDP-Glycosyltransferase superfamily protein UGT84A1 -0.59 0.3 -0.3
116 AT1G43900 Protein phosphatase 2C family protein 0.59 0.31 -0.33
117 AT1G55310 SC35-like splicing factor 33 SC35-LIKE SPLICING FACTOR 33,
SC35-like splicing factor 33,
SC35-LIKE SPLICING FACTOR 33,
SC35-like splicing factor 33		 0.59 0.35 -0.32
118 AT3G47500 cycling DOF factor 3 cycling DOF factor 3 -0.59 0.33 -0.3
119 AT4G22270 Protein of unknown function (DUF3537) ARABIDOPSIS MEMBRANE RELATED
BIGGER1, MEMBRANE RELATED BIGGER1		 -0.59 0.3 -0.31
120 AT2G20280 Zinc finger C-x8-C-x5-C-x3-H type family protein 0.59 0.32 -0.33
121 AT3G61580 Fatty acid/sphingolipid desaturase AtSLD1, sphingoid LCB desaturase 1 -0.59 0.33 -0.32
122 AT2G17660 RPM1-interacting protein 4 (RIN4) family protein -0.59 0.32 -0.32
123 AT1G68750 phosphoenolpyruvate carboxylase 4 phosphoenolpyruvate carboxylase 4,
phosphoenolpyruvate carboxylase 4		 0.58 0.31 -0.3
124 AT3G12720 myb domain protein 67 myb domain protein 67, ATY53,
MYB67, myb domain protein 67		 0.58 0.34 -0.33
125 AT4G14920 Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc
finger protein		 0.58 0.29 -0.35
126 AT1G26260 cryptochrome-interacting basic-helix-loop-helix 5 cryptochrome-interacting
basic-helix-loop-helix 5		 0.58 0.32 -0.32
127 AT5G66380 folate transporter 1 folate transporter 1, folate
transporter 1		 0.58 0.31 -0.3
128 AT4G37790 Homeobox-leucine zipper protein family HAT22 0.58 0.32 -0.31
129 AT1G60960 iron regulated transporter 3 IRON REGULATED TRANSPORTER 3, iron
regulated transporter 3		 0.58 0.3 -0.35
130 AT5G55900 Sucrase/ferredoxin-like family protein 0.57 0.33 -0.31
131 AT4G14840 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G22520.1); Has 1681 Blast hits
to 1532 proteins in 283 species: Archae - 19; Bacteria -
179; Metazoa - 579; Fungi - 131; Plants - 223; Viruses - 5;
Other Eukaryotes - 545 (source: NCBI BLink).		 0.57 0.34 -0.32
132 AT5G25900 GA requiring 3 ARABIDOPSIS THALIANA ENT-KAURENE
OXIDASE 1, CYTOCHROME P450 701 A3,
GA requiring 3		 0.57 0.31 -0.34
133 AT2G44710 RNA-binding (RRM/RBD/RNP motifs) family protein 0.57 0.31 -0.29
134 AT4G26870 Class II aminoacyl-tRNA and biotin synthetases superfamily
protein		 0.57 0.34 -0.32
135 AT5G23340 RNI-like superfamily protein 0.56 0.31 -0.3
136 AT4G30570 Glucose-1-phosphate adenylyltransferase family protein 0.56 0.3 -0.32
137 AT1G66480 plastid movement impaired 2 0.56 0.31 -0.3
138 AT5G64570 beta-D-xylosidase 4 ARABIDOPSIS THALIANA
BETA-D-XYLOSIDASE 4,
beta-D-xylosidase 4		 0.56 0.31 -0.34
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
139 C0124 Isonicotinic acid - - - 0.74 0.49 -0.43
140 C0183 MST_3033.1 - - - -0.68 0.49 -0.47
141 C0077 Digalactosyldiacylglycerol-34:2 - Digalactosyldiacylglycerol-34:2 triacylglycerol degradation,
linoleate biosynthesis I,
glycolipid biosynthesis,
glutathione redox reactions I 		-0.59 0.33 -0.33