AT3G56090 : ferritin 3
Query Information
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AGICode AT3G56090
Description ferritin 3
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G56090 ferritin 3 ferritin 3, ferritin 3 1 0.33 -0.31
2 AT4G11420 eukaryotic translation initiation factor 3A ATEIF3A-1, ATTIF3A1, eukaryotic
translation initiation factor 3A,
EIF3A-1, TIF3A1		 0.87 0.32 -0.31
3 AT5G22650 histone deacetylase 2B ARABIDOPSIS HISTONE DEACETYLASE 2,
ATHD2B, HISTONE DEACETYLASE 2,
histone deacetylase 2B, HDA4,
HDT02, HDT2		 0.87 0.32 -0.33
4 AT2G27840 histone deacetylase-related / HD-related HISTONE DEACETYLASE 13, HDT04,
HDT4		 0.85 0.33 -0.31
5 AT5G60990 DEA(D/H)-box RNA helicase family protein 0.84 0.32 -0.34
6 AT5G20160 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.84 0.33 -0.35
7 AT1G56110 homolog of nucleolar protein NOP56 homolog of nucleolar protein NOP56 0.83 0.3 -0.32
8 AT1G63660 GMP synthase (glutamine-hydrolyzing), putative / glutamine
amidotransferase, putative		 0.83 0.32 -0.32
9 AT4G27380 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.83 0.32 -0.3
10 AT3G57000 nucleolar essential protein-related 0.82 0.3 -0.32
11 AT4G10620 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.82 0.31 -0.3
12 AT1G08580 unknown protein; Has 39 Blast hits to 39 proteins in 15
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 35; Viruses - 0; Other Eukaryotes - 4 (source:
NCBI BLink).		 0.82 0.31 -0.3
13 AT5G11240 transducin family protein / WD-40 repeat family protein 0.82 0.31 -0.32
14 AT4G30840 Transducin/WD40 repeat-like superfamily protein 0.82 0.32 -0.32
15 AT3G06700 Ribosomal L29e protein family 0.82 0.31 -0.32
16 AT3G10530 Transducin/WD40 repeat-like superfamily protein 0.81 0.31 -0.28
17 AT4G34740 GLN phosphoribosyl pyrophosphate amidotransferase 2 GLN phosphoribosyl pyrophosphate
amidotransferase 2, GLN
phosphoribosyl pyrophosphate
amidotransferase 2, ATPURF2,
CHLOROPLAST IMPORT APPARATUS 1		 0.81 0.31 -0.33
18 AT4G16520 Ubiquitin-like superfamily protein autophagy 8f -0.81 0.31 -0.32
19 AT1G79650 Rad23 UV excision repair protein family Arabidopsis thaliana aldehyde
oxidase 1, RADIATION SENSITIVE23B		 0.81 0.31 -0.31
20 AT2G20490 nucleolar RNA-binding Nop10p family protein EMBRYO SAC DEVELOPMENT ARREST 27,
NOP10		 0.81 0.34 -0.3
21 AT5G62440 Protein of unknown function (DUF3223) 0.81 0.34 -0.32
22 AT3G59540 Ribosomal L38e protein family 0.8 0.3 -0.32
23 AT4G38100 unknown protein; LOCATED IN: chloroplast thylakoid
membrane; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT4G01150.1); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.8 0.32 -0.31
24 AT2G39990 eukaryotic translation initiation factor 2 Arabidopsis thaliana eukaryotic
translation initiation factor 3
subunit F, eukaryotic translation
initiation factor 2, eukaryotic
translation initiation factor 3
subunit F		 0.8 0.31 -0.3
25 AT3G01160 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: cytosol, nucleus;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: NUC153
(InterPro:IPR012580); Has 36638 Blast hits to 21323
proteins in 1057 species: Archae - 109; Bacteria - 2369;
Metazoa - 13796; Fungi - 4858; Plants - 1657; Viruses -
489; Other Eukaryotes - 13360 (source: NCBI BLink).		 0.79 0.29 -0.31
26 AT2G47990 transducin family protein / WD-40 repeat family protein EMBRYO SAC DEVELOPMENT ARREST 13,
EMBRYO SAC DEVELOPMENT ARREST 19,
SLOW WALKER1		 0.79 0.31 -0.32
27 AT3G16080 Zinc-binding ribosomal protein family protein 0.79 0.32 -0.31
28 AT2G36070 translocase inner membrane subunit 44-2 translocase inner membrane subunit
44-2, translocase inner membrane
subunit 44-2		 0.78 0.32 -0.31
29 AT1G03360 ribosomal RNA processing 4 ribosomal RNA processing 4,
ribosomal RNA processing 4		 0.78 0.32 -0.33
30 AT5G19820 ARM repeat superfamily protein embryo defective 2734 0.78 0.32 -0.33
31 AT5G19920 Transducin/WD40 repeat-like superfamily protein 0.78 0.31 -0.32
32 AT3G49180 Transducin/WD40 repeat-like superfamily protein ROOT INITIATION DEFECTIVE 3 0.78 0.32 -0.3
33 AT5G58370 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.78 0.3 -0.31
34 AT2G40700 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.77 0.32 -0.32
35 AT3G15460 Ribosomal RNA processing Brix domain protein 0.77 0.33 -0.32
36 AT5G41190 CONTAINS InterPro DOMAIN/s: Nin one binding (NOB1)
Zn-ribbon like (InterPro:IPR014881), D-site 20S pre-rRNA
nuclease (InterPro:IPR017117); Has 1807 Blast hits to 1807
proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa
- 736; Fungi - 347; Plants - 385; Viruses - 0; Other
Eukaryotes - 339 (source: NCBI BLink).		 0.76 0.32 -0.32
37 AT3G23940 dehydratase family 0.76 0.31 -0.31
38 AT2G14460 unknown protein; Has 3 Blast hits to 3 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.76 0.31 -0.32
39 AT2G29760 Tetratricopeptide repeat (TPR)-like superfamily protein ORGANELLE TRANSCRIPT PROCESSING 81 0.76 0.3 -0.32
40 AT4G32720 La protein 1 La protein 1, La protein 1 0.76 0.3 -0.32
41 AT3G58510 DEA(D/H)-box RNA helicase family protein 0.76 0.33 -0.32
42 AT2G31660 ARM repeat superfamily protein enhanced miRNA activity 1, SUPER
SENSITIVE TO ABA AND DROUGHT2,
UNARMED 9		 0.76 0.31 -0.32
43 AT4G19840 phloem protein 2-A1 phloem protein 2-A1, phloem
protein 2-A1, phloem protein 2-A1		 -0.76 0.32 -0.34
44 AT1G15510 Tetratricopeptide repeat (TPR)-like superfamily protein ARABIDOPSIS EARLY CHLOROPLAST
BIOGENESIS2, EARLY CHLOROPLAST
BIOGENESIS2, VANILLA CREAM 1		 0.75 0.28 -0.33
45 AT5G60360 aleurain-like protease aleurain-like protease,
aleurain-like protease, SENESCENCE
ASSOCIATED GENE2		 -0.75 0.3 -0.32
46 AT1G06560 NOL1/NOP2/sun family protein 0.75 0.3 -0.32
47 AT4G38710 glycine-rich protein 0.75 0.33 -0.33
48 AT2G34780 maternal effect embryo arrest 22 EMBRYO DEFECTIVE 1611, MATERNAL
EFFECT EMBRYO ARREST 22		 0.75 0.33 -0.32
49 AT1G13030 sphere organelles protein-related 0.75 0.33 -0.33
50 AT4G26980 RNI-like superfamily protein -0.75 0.32 -0.32
51 AT1G18800 NAP1-related protein 2 NAP1-related protein 2 0.75 0.31 -0.32
52 AT3G56360 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G05250.1); Has 45 Blast
hits to 45 proteins in 13 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.74 0.3 -0.34
53 AT5G58740 HSP20-like chaperones superfamily protein -0.74 0.31 -0.31
54 AT2G22690 zinc ion binding -0.73 0.3 -0.33
55 AT1G62040 Ubiquitin-like superfamily protein autophagy 8c -0.73 0.31 -0.31
56 AT1G08460 histone deacetylase 8 ATHDA8, histone deacetylase 8,
HISTONE DEACETYLASE 8		 -0.73 0.32 -0.34
57 AT5G16800 Acyl-CoA N-acyltransferases (NAT) superfamily protein -0.73 0.29 -0.32
58 AT5G22270 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G11600.1); Has 136 Blast hits
to 136 proteins in 15 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 136; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.73 0.31 -0.31
59 AT5G04040 Patatin-like phospholipase family protein SUGAR-DEPENDENT1 -0.73 0.32 -0.33
60 AT3G54360 zinc ion binding -0.73 0.32 -0.32
61 AT1G12050 fumarylacetoacetase, putative -0.72 0.33 -0.36
62 AT3G07350 Protein of unknown function (DUF506) -0.72 0.31 -0.31
63 AT1G44770 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G49710.3); Has 81 Blast hits
to 81 proteins in 17 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.71 0.33 -0.31
64 AT4G17940 Tetratricopeptide repeat (TPR)-like superfamily protein -0.71 0.29 -0.31
65 AT1G11940 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein		 -0.71 0.32 -0.32
66 AT1G55280 Lipase/lipooxygenase, PLAT/LH2 family protein -0.7 0.3 -0.3
67 AT5G37670 HSP20-like chaperones superfamily protein -0.7 0.3 -0.29
68 AT3G22250 UDP-Glycosyltransferase superfamily protein -0.7 0.33 -0.32
69 AT2G44850 unknown protein; CONTAINS InterPro DOMAIN/s:
Uncharacterised protein family UPF0565
(InterPro:IPR018881); BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT2G45380.1); Has 138 Blast
hits to 138 proteins in 53 species: Archae - 0; Bacteria -
0; Metazoa - 73; Fungi - 0; Plants - 62; Viruses - 0; Other
Eukaryotes - 3 (source: NCBI BLink).		 -0.7 0.32 -0.32
70 AT5G45350 proline-rich family protein -0.69 0.33 -0.29
71 AT3G17770 Dihydroxyacetone kinase -0.69 0.33 -0.32
72 AT5G19860 Protein of unknown function, DUF538 -0.69 0.32 -0.34
73 AT5G48020 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.68 0.32 -0.33
74 AT5G13740 zinc induced facilitator 1 zinc induced facilitator 1 -0.68 0.31 -0.29
75 AT5G57815 Cytochrome c oxidase, subunit Vib family protein -0.68 0.34 -0.32
76 AT2G34840 Coatomer epsilon subunit -0.68 0.32 -0.29
77 AT3G21270 DOF zinc finger protein 2 DOF zinc finger protein 2, DOF
zinc finger protein 2		 -0.68 0.32 -0.3
78 AT3G23690 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 -0.68 0.33 -0.32
79 AT5G13760 Plasma-membrane choline transporter family protein -0.67 0.33 -0.31
80 AT5G16150 plastidic GLC translocator GLUCOSE TRANSPORTER 1, plastidic
GLC translocator		 -0.67 0.3 -0.31
81 AT1G07230 non-specific phospholipase C1 non-specific phospholipase C1 -0.66 0.33 -0.31
82 AT5G07250 RHOMBOID-like protein 3 RHOMBOID-like protein 3,
RHOMBOID-like protein 3		 -0.66 0.35 -0.32
83 AT3G10210 SEC14 cytosolic factor family protein / phosphoglyceride
transfer family protein		 -0.66 0.32 -0.32
84 AT2G32080 purin-rich alpha 1 purin-rich alpha 1 -0.66 0.31 -0.32
85 AT2G30540 Thioredoxin superfamily protein -0.66 0.33 -0.31
86 AT1G19310 RING/U-box superfamily protein -0.65 0.31 -0.34
87 AT2G21560 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G39190.1); Has 3685 Blast hits
to 2305 proteins in 270 species: Archae - 0; Bacteria -
156; Metazoa - 1145; Fungi - 322; Plants - 177; Viruses -
6; Other Eukaryotes - 1879 (source: NCBI BLink).		 -0.65 0.32 -0.34
88 AT4G24400 CBL-interacting protein kinase 8 ATCIPK8, CBL-interacting protein
kinase 8, PROTEIN KINASE 11,
SNF1-RELATED PROTEIN KINASE 3.13		 -0.65 0.31 -0.29
89 AT2G35950 embryo sac development arrest 12 embryo sac development arrest 12 -0.65 0.3 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
90 C0053 ADP - ADP phosphatidylcholine biosynthesis I,
mannitol degradation II,
lipid IVA biosynthesis,
stachyose degradation,
Rubisco shunt,
copper transport II,
glycerol degradation IV,
chorismate biosynthesis,
folate polyglutamylation II,
galactose degradation III,
D-myo-inositol (1,4,5)-trisphosphate biosynthesis,
UDP-L-arabinose biosynthesis II (from L-arabinose),
cadmium transport I,
folate polyglutamylation,
coenzyme A biosynthesis,
sulfate activation for sulfonation,
1,4-dihydroxy-2-naphthoate biosynthesis II (plants),
pyrimidine deoxyribonucleotides de novo biosynthesis I,
galactose degradation II,
inosine-5'-phosphate biosynthesis II,
ribose degradation,
acetyl-CoA biosynthesis (from citrate),
inositol pyrophosphates biosynthesis,
fatty acid biosynthesis initiation I,
xylose degradation I,
adenine and adenosine salvage VI,
TCA cycle variation III (eukaryotic),
tetrahydrofolate biosynthesis II,
phosphatidylethanolamine biosynthesis II,
pyridoxal 5'-phosphate salvage pathway,
citrulline biosynthesis,
trans-zeatin biosynthesis,
glutamine biosynthesis I,
arginine biosynthesis II (acetyl cycle),
L-Ndelta-acetylornithine biosynthesis,
mevalonate pathway I,
methionine biosynthesis II,
trehalose degradation II (trehalase),
citrulline degradation,
methionine salvage pathway,
TCA cycle variation V (plant),
chlorophyllide a biosynthesis I,
starch degradation I,
methylerythritol phosphate pathway,
pyridine nucleotide cycling (plants),
ceramide degradation,
biotin-carboxyl carrier protein assembly,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
UDP-D-galacturonate biosynthesis II (from D-galacturonate),
asparagine biosynthesis III (tRNA-dependent),
superpathway of glyoxylate cycle and fatty acid degradation,
NAD/NADH phosphorylation and dephosphorylation,
1D-myo-inositol hexakisphosphate biosynthesis V (from Ins(1,3,4)P3),
galactose degradation I (Leloir pathway),
uridine-5'-phosphate biosynthesis,
lipid-dependent phytate biosynthesis II (via Ins(1,3,4)P3),
sucrose degradation III,
lysine biosynthesis VI,
sphingolipid biosynthesis (plants),
choline biosynthesis I,
GDP-glucose biosynthesis,
photorespiration,
gamma-glutamyl cycle (plant pathway),
5-aminoimidazole ribonucleotide biosynthesis I,
gamma-glutamyl cycle,
thiamine biosynthesis II,
proline biosynthesis III,
glutathione biosynthesis,
folate transformations II,
ornithine biosynthesis,
diphthamide biosynthesis,
S-methyl-5'-thioadenosine degradation I,
starch biosynthesis,
arginine biosynthesis I,
homoserine biosynthesis,
flavin biosynthesis I (bacteria and plants),
sucrose biosynthesis I,
leucine degradation I,
glycolysis I,
pyrimidine ribonucleotides interconversion,
1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza),
glycolysis IV (plant cytosol),
Calvin-Benson-Bassham cycle,
UDP-D-glucuronate biosynthesis (from myo-inositol),
guanine and guanosine salvage III,
glutamine biosynthesis III,
L-glutamine biosynthesis II (tRNA-dependent),
GDP-L-fucose biosynthesis II (from L-fucose),
nitrate reduction II (assimilatory),
ammonia assimilation cycle II,
gluconeogenesis I,
threonine biosynthesis from homoserine,
mannose degradation,
urea cycle,
lipid-dependent phytate biosynthesis I (via Ins(1,4,5)P3),
biotin biosynthesis II 		-0.76 0.44 -0.47 C0053
91 C0026 2-Hydroxyisobutyric acid - - β oxidation -0.71 0.42 -0.43
92 C0099 Glucose-1-phosphate α,β-D-Glucose-1-phosphate α-D-Glucose-1-phosphate; β-D-Glucose-1-phosphate galactose degradation I (Leloir pathway) -0.69 0.44 -0.42 C0099
93 C0054 Agmatine - Agmatine putrescine biosynthesis I,
putrescine biosynthesis II,
superpathway of polyamine biosynthesis 		-0.68 0.32 -0.31 C0054
94 C0032 3-Phosphoglyceric acid 3-Phospho-(R)-glyceric acid 3-Phosphoglycerate glycolysis I,
gluconeogenesis I,
Calvin-Benson-Bassham cycle,
sucrose biosynthesis I,
serine biosynthesis,
photorespiration,
Rubisco shunt,
glycolysis IV (plant cytosol) 		-0.68 0.44 -0.44 C0032
95 C0091 Fructose-1,6-bisphosphate D-Fructose-1,6-bisphosphate Fructose-1,6-bisphosphate gluconeogenesis I,
Calvin-Benson-Bassham cycle,
glycolysis IV (plant cytosol),
glycolysis I,
CA1P biosynthesis,
sucrose biosynthesis I 		-0.67 0.42 -0.45 C0091