AT3G55005 : tonneau 1b
Query Information
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AGICode AT3G55005
Description tonneau 1b (TON1b)
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G55005 tonneau 1b (TON1b) tonneau 1b 1 0.31 -0.31
2 AT1G09630 RAB GTPase 11C ARABIDOPSIS RAB GTPASE A2A, RAB
GTPase 11C, ARABIDOPSIS RAB GTPASE
A2A, RAB GTPASE A2A, RAB GTPase
11C		 0.8 0.31 -0.32
3 AT2G39900 GATA type zinc finger transcription factor family protein WLIM2a 0.79 0.28 -0.31
4 AT2G29550 tubulin beta-7 chain tubulin beta-7 chain 0.78 0.31 -0.32
5 AT5G24160 squalene monoxygenase 6 squalene monoxygenase 6 -0.78 0.34 -0.29
6 AT2G23110 Late embryogenesis abundant protein, group 6 -0.78 0.29 -0.3
7 AT5G07590 Transducin/WD40 repeat-like superfamily protein 0.77 0.32 -0.29
8 AT1G21880 lysm domain GPI-anchored protein 1 precursor lysm domain GPI-anchored protein 1
precursor		 0.76 0.32 -0.34
9 AT1G48610 AT hook motif-containing protein 0.76 0.32 -0.33
10 AT2G39880 myb domain protein 25 myb domain protein 25, myb domain
protein 25		 0.76 0.31 -0.31
11 AT2G04780 FASCICLIN-like arabinoogalactan 7 FASCICLIN-like arabinoogalactan 7 0.76 0.31 -0.32
12 AT5G13100 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 0.75 0.31 -0.3
13 AT1G17020 senescence-related gene 1 SENESCENCE-RELATED GENE 1,
senescence-related gene 1		 -0.75 0.32 -0.33
14 AT3G13674 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED
DURING: 11 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G55205.1); Has 76 Blast
hits to 76 proteins in 10 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.75 0.33 -0.32
15 AT2G41480 Peroxidase superfamily protein -0.75 0.31 -0.31
16 AT1G10780 F-box/RNI-like superfamily protein 0.75 0.33 -0.31
17 AT5G10240 asparagine synthetase 3 asparagine synthetase 3 0.74 0.3 -0.29
18 AT2G20810 galacturonosyltransferase 10 galacturonosyltransferase 10, LGT4 0.74 0.29 -0.31
19 AT3G22460 O-acetylserine (thiol) lyase (OAS-TL) isoform A2 O-acetylserine (thiol) lyase
(OAS-TL) isoform A2		 -0.74 0.29 -0.3
20 AT5G64200 ortholog of human splicing factor SC35 ortholog of human splicing factor
SC35, ARABIDOPSIS THALIANA
ORTHOLOG OF HUMAN SPLICING FACTOR
SC35, ortholog of human splicing
factor SC35		 0.74 0.32 -0.31
21 AT1G13340 Regulator of Vps4 activity in the MVB pathway protein -0.74 0.33 -0.31
22 AT3G20660 organic cation/carnitine transporter4 organic cation/carnitine
transporter4, organic
cation/carnitine transporter4		 -0.74 0.31 -0.3
23 AT5G41060 DHHC-type zinc finger family protein 0.74 0.32 -0.32
24 AT5G48900 Pectin lyase-like superfamily protein 0.73 0.29 -0.31
25 AT5G55120 galactose-1-phosphate guanylyltransferase
(GDP)s;GDP-D-glucose phosphorylases;quercetin
4'-O-glucosyltransferases		 VITAMIN C DEFECTIVE 5 -0.73 0.31 -0.31
26 AT3G56130 biotin/lipoyl attachment domain-containing protein 0.73 0.28 -0.31
27 AT2G11910 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast envelope; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; Has 92883 Blast hits to
31060 proteins in 1576 species: Archae - 765; Bacteria -
32670; Metazoa - 21164; Fungi - 12252; Plants - 4238;
Viruses - 1282; Other Eukaryotes - 20512 (source: NCBI
BLink).		 0.73 0.33 -0.32
28 AT1G48580 unknown protein; Has 91 Blast hits to 91 proteins in 40
species: Archae - 0; Bacteria - 0; Metazoa - 49; Fungi - 0;
Plants - 28; Viruses - 0; Other Eukaryotes - 14 (source:
NCBI BLink).		 0.73 0.31 -0.33
29 AT5G12040 Nitrilase/cyanide hydratase and apolipoprotein
N-acyltransferase family protein		 -0.72 0.32 -0.32
30 AT1G04120 multidrug resistance-associated protein 5 ATP-binding cassette C5,
Arabidopsis thaliana ATP-binding
cassette C5, multidrug
resistance-associated protein 5,
MULTIDRUG RESISTANCE PROTEIN 5,
multidrug resistance-associated
protein 5		 -0.72 0.31 -0.33
31 AT2G22910 N-acetyl-l-glutamate synthase 1 N-acetyl-l-glutamate synthase 1 -0.72 0.33 -0.33
32 AT3G02050 K+ uptake transporter 3 ARABIDOPSIS THALIANA POTASSIUM
TRANSPORTER 4, ATKUP3, K+ uptake
transporter 3		 -0.72 0.31 -0.31
33 AT4G16515 Encodes a root meristem growth factor (RGF). Belongs to a
family of functionally redundant homologous peptides that
are secreted, tyrosine-sulfated, and expressed mainly in
the stem cell area and the innermost layer of central
columella cells. RGFs are required for maintenance of the
root stem cell niche and transit amplifying cell
proliferation. Members of this family include: At5g60810
(RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350
(RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240
(RGF7), At2g03830 (RGF8) and At5g64770 (RGF9).		 root meristem growth factor 6 0.72 0.34 -0.32
34 AT1G80160 Lactoylglutathione lyase / glyoxalase I family protein glyoxylase I 7 -0.72 0.31 -0.32
35 AT1G05790 lipase class 3 family protein -0.72 0.34 -0.31
36 AT5G25460 Protein of unknown function, DUF642 0.71 0.3 -0.3
37 AT3G13570 SC35-like splicing factor 30A SC35-like splicing factor 30A,
SC35-like splicing factor 30A		 0.71 0.32 -0.32
38 AT1G04240 AUX/IAA transcriptional regulator family protein indole-3-acetic acid inducible 3,
SHORT HYPOCOTYL 2		 0.71 0.32 -0.33
39 AT3G63130 RAN GTPase activating protein 1 RAN GTPASE-ACTIVATING PROTEIN 1,
RAN GTPase activating protein 1		 0.71 0.32 -0.32
40 AT5G42850 Thioredoxin superfamily protein -0.71 0.31 -0.3
41 AT5G53360 TRAF-like superfamily protein -0.71 0.31 -0.34
42 AT4G24000 cellulose synthase like G2 ARABIDOPSIS THALIANA CELLULOSE
SYNTHASE LIKE G2, cellulose
synthase like G2		 -0.71 0.31 -0.32
43 AT2G31270 homolog of yeast CDT1 A ARABIDOPSIS HOMOLOG OF YEAST CDT1
A, ARABIDOPSIS HOMOLOG OF YEAST
CDT1, homolog of yeast CDT1 A		 0.71 0.3 -0.34
44 AT4G31360 selenium binding 0.7 0.32 -0.3
45 AT5G13080 WRKY DNA-binding protein 75 ARABIDOPSIS THALIANA WRKY
DNA-BINDING PROTEIN 75, WRKY
DNA-binding protein 75		 -0.7 0.32 -0.31
46 AT5G49460 ATP citrate lyase subunit B 2 ATP citrate lyase subunit B 2 0.7 0.31 -0.33
47 AT2G45570 cytochrome P450, family 76, subfamily C, polypeptide 2 cytochrome P450, family 76,
subfamily C, polypeptide 2		 -0.69 0.32 -0.3
48 AT1G04440 casein kinase like 13 casein kinase like 13 -0.69 0.31 -0.31
49 AT3G53390 Transducin/WD40 repeat-like superfamily protein -0.69 0.33 -0.3
50 AT4G04960 Concanavalin A-like lectin protein kinase family protein -0.69 0.31 -0.32
51 AT5G11720 Glycosyl hydrolases family 31 protein -0.69 0.35 -0.3
52 AT3G28050 nodulin MtN21 /EamA-like transporter family protein -0.69 0.32 -0.33
53 AT5G37890 Protein with RING/U-box and TRAF-like domains 0.69 0.31 -0.33
54 AT3G51970 acyl-CoA sterol acyl transferase 1 acyl-CoA sterol acyl transferase
1, ATASAT1, ARABIDOPSIS THALIANA
STEROL O-ACYLTRANSFERASE 1		 -0.69 0.32 -0.31
55 AT2G17560 high mobility group B4 high mobility group B4, NFD04,
NUCLEOSOME/CHROMATIN ASSEMBLY
FACTOR D4		 0.69 0.33 -0.3
56 AT1G08780 ABI3-interacting protein 3 ABI3-interacting protein 3,
PREFOLDIN 4		 0.69 0.32 -0.32
57 AT3G06660 PAPA-1-like family protein / zinc finger (HIT type) family
protein		 0.68 0.3 -0.32
58 AT5G26600 Pyridoxal phosphate (PLP)-dependent transferases
superfamily protein		 -0.68 0.3 -0.3
59 AT3G06810 acyl-CoA dehydrogenase-related IBA-RESPONSE 3 -0.68 0.31 -0.31
60 AT5G15160 BANQUO 2 BASIC HELIX-LOOP-HELIX PROTEIN
134, BANQUO 2		 0.68 0.33 -0.33
61 AT1G55160 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion, plastid; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT2G19530.1); Has 63 Blast hits to 63 proteins in 14
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.68 0.3 -0.34
62 AT1G07360 CCCH-type zinc fingerfamily protein with RNA-binding domain MOS4-associated complex subunit 5A 0.68 0.32 -0.32
63 AT2G24590 RNA recognition motif and CCHC-type zinc finger domains
containing protein		 RS-containing zinc finger protein
22a, RS-containing zinc finger
protein 22a		 0.68 0.31 -0.33
64 AT5G38780 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.68 0.31 -0.31
65 AT3G21750 UDP-glucosyl transferase 71B1 UDP-glucosyl transferase 71B1 -0.68 0.34 -0.33
66 AT2G39030 Acyl-CoA N-acyltransferases (NAT) superfamily protein N-acetyltransferase activity 1 -0.67 0.32 -0.32
67 AT5G29000 Homeodomain-like superfamily protein PHR1-like 1 -0.67 0.33 -0.33
68 AT5G03455 Rhodanese/Cell cycle control phosphatase superfamily
protein		 ARSENATE REDUCTASE 2, ARATH;CDC25,
CDC25		 -0.67 0.33 -0.3
69 AT3G12750 zinc transporter 1 precursor zinc transporter 1 precursor -0.67 0.32 -0.31
70 AT1G09760 U2 small nuclear ribonucleoprotein A U2 small nuclear ribonucleoprotein
A		 0.67 0.3 -0.3
71 AT1G55850 cellulose synthase like E1 ATCSLE1, cellulose synthase like
E1		 -0.67 0.31 -0.32
72 AT4G28190 Developmental regulator, ULTRAPETALA ULTRAPETALA, ULTRAPETALA1 0.67 0.33 -0.33
73 AT5G20940 Glycosyl hydrolase family protein -0.67 0.32 -0.31
74 AT4G33700 CBS domain-containing protein with a domain of unknown
function (DUF21)		 -0.67 0.32 -0.29
75 AT5G55480 SHV3-like 1 Glycerophosphodiester
phosphodiesterase (GDPD) like 4,
glycerophosphodiesterase-like 1,
SHV3-like 1		 0.67 0.33 -0.33
76 AT3G63150 MIRO-related GTP-ase 2 CALCIUM BINDING GTP-ASE,
MIRO-related GTP-ase 2		 -0.67 0.31 -0.31
77 AT2G36400 growth-regulating factor 3 growth-regulating factor 3,
growth-regulating factor 3		 0.66 0.31 -0.3
78 AT4G19450 Major facilitator superfamily protein -0.66 0.32 -0.31
79 AT1G48790 associated molecule with the SH3 domain of STAM 1 associated molecule with the SH3
domain of STAM 1		 -0.66 0.3 -0.31
80 AT5G06930 LOCATED IN: chloroplast; EXPRESSED IN: 15 plant structures;
EXPRESSED DURING: 7 growth stages; BEST Arabidopsis
thaliana protein match is: nucleolar protein gar2-related
(TAIR:AT2G42320.2); Has 3369 Blast hits to 1526 proteins in
313 species: Archae - 2; Bacteria - 910; Metazoa - 754;
Fungi - 336; Plants - 137; Viruses - 11; Other Eukaryotes -
1219 (source: NCBI BLink).		 0.66 0.33 -0.3
81 AT5G12050 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G13980.1); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 0.66 0.32 -0.32
82 AT5G52450 MATE efflux family protein -0.66 0.31 -0.3
83 AT3G23240 ethylene response factor 1 ETHYLENE RESPONSE FACTOR 1,
ethylene response factor 1		 -0.66 0.3 -0.29
84 AT3G19515 CONTAINS InterPro DOMAIN/s: Apoptosis inhibitory 5
(InterPro:IPR008383); BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G23935.1); Has 546 Blast
hits to 394 proteins in 84 species: Archae - 0; Bacteria -
3; Metazoa - 210; Fungi - 15; Plants - 143; Viruses - 0;
Other Eukaryotes - 175 (source: NCBI BLink).		 0.66 0.33 -0.31
85 AT4G15330 cytochrome P450, family 705, subfamily A, polypeptide 1 cytochrome P450, family 705,
subfamily A, polypeptide 1		 -0.66 0.3 -0.3
86 AT5G55310 DNA topoisomerase 1 beta TOPOISOMERASE 1, DNA topoisomerase
1 beta		 -0.66 0.33 -0.31
87 AT3G09730 unknown protein; Has 1171 Blast hits to 1097 proteins in
212 species: Archae - 14; Bacteria - 83; Metazoa - 583;
Fungi - 105; Plants - 149; Viruses - 14; Other Eukaryotes -
223 (source: NCBI BLink).		 0.66 0.3 -0.32
88 AT2G20840 Secretory carrier membrane protein (SCAMP) family protein 0.66 0.33 -0.34
89 AT2G27150 abscisic aldehyde oxidase 3 abscisic aldehyde oxidase 3,
Aldehyde oxidase delta,
Arabidopsis thaliana aldehyde
oxidase 3, AtAAO3		 -0.66 0.32 -0.34
90 AT2G36960 TSL-kinase interacting protein 1 TSL-kinase interacting protein 1 -0.66 0.3 -0.3
91 AT3G62220 Protein kinase superfamily protein 0.66 0.3 -0.33
92 AT1G31820 Amino acid permease family protein -0.66 0.32 -0.3
93 AT2G46610 RNA-binding (RRM/RBD/RNP motifs) family protein arginine/serine-rich splicing
factor 31a, arginine/serine-rich
splicing factor 31a		 -0.66 0.32 -0.32
94 AT3G60690 SAUR-like auxin-responsive protein family -0.65 0.33 -0.33
95 AT2G35940 BEL1-like homeodomain 1 BEL1-like homeodomain 1, embryo
sac development arrest 29		 -0.65 0.3 -0.34
96 AT3G23200 Uncharacterised protein family (UPF0497) -0.65 0.33 -0.32
97 AT4G34540 NmrA-like negative transcriptional regulator family protein -0.65 0.31 -0.32
98 AT2G21410 vacuolar proton ATPase A2 vacuolar proton ATPase A2 -0.65 0.33 -0.32
99 AT4G16330 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.64 0.29 -0.29
100 AT5G23810 amino acid permease 7 amino acid permease 7 -0.64 0.31 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
101 C0228 Ribose-5-phosphate D-Ribose-5-phosphate D-Ribose-5-phosphate PRPP biosynthesis I,
Calvin-Benson-Bassham cycle,
trans-zeatin biosynthesis,
pentose phosphate pathway (non-oxidative branch),
pyridine nucleotide cycling (plants),
Rubisco shunt,
ribose degradation,
pyridoxal 5'-phosphate biosynthesis II 		0.81 0.49 -0.46 C0228
102 C0105 Glutathione disulfide - Glutathione disulfide sulfate reduction II (assimilatory),
selenate reduction,
glutathione redox reactions I,
ascorbate glutathione cycle,
glutathione redox reactions II 		-0.81 0.43 -0.47 C0105
103 C0029 3-Indolylacetonitrile - Indole-3-acetonitrile indole glucosinolate breakdown (insect chewing induced),
IAA biosynthesis I,
camalexin biosynthesis 		-0.68 0.31 -0.32 C0029