AT3G55170 : -
Query Information
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AGICode AT3G55170
Description Ribosomal L29 family protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G55170 Ribosomal L29 family protein 1 0.33 -0.33
2 AT5G27990 Pre-rRNA-processing protein TSR2, conserved region 0.88 0.3 -0.31
3 AT1G64490 DEK, chromatin associated protein 0.85 0.31 -0.34
4 AT5G03345 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s:
Magnesium transporter (InterPro:IPR018937); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.83 0.28 -0.32
5 AT1G43170 ribosomal protein 1 ribosomal protein 1, embryo
defective 2207, ribosomal protein
1, RPL3A		 0.83 0.33 -0.3
6 AT5G02310 proteolysis 6 proteolysis 6 -0.82 0.32 -0.3
7 AT1G64190 6-phosphogluconate dehydrogenase family protein 0.81 0.3 -0.31
8 AT5G17870 plastid-specific 50S ribosomal protein 6 plastid-specific 50S ribosomal
protein 6		 0.8 0.29 -0.3
9 AT4G22720 Actin-like ATPase superfamily protein 0.79 0.3 -0.33
10 AT1G65290 mitochondrial acyl carrier protein 2 mitochondrial acyl carrier protein
2		 0.78 0.33 -0.33
11 AT1G65390 phloem protein 2 A5 phloem protein 2 A5, phloem
protein 2 A5		 0.77 0.32 -0.34
12 AT5G02610 Ribosomal L29 family protein 0.77 0.31 -0.31
13 AT1G47250 20S proteasome alpha subunit F2 20S proteasome alpha subunit F2 0.76 0.35 -0.31
14 AT4G01790 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.76 0.32 -0.34
15 AT5G05890 UDP-Glycosyltransferase superfamily protein 0.75 0.31 -0.31
16 AT1G48840 Plant protein of unknown function (DUF639) -0.75 0.32 -0.3
17 AT1G49410 translocase of the outer mitochondrial membrane 6 translocase of the outer
mitochondrial membrane 6		 0.75 0.33 -0.3
18 AT5G28060 Ribosomal protein S24e family protein 0.75 0.33 -0.35
19 AT5G05750 DNAJ heat shock N-terminal domain-containing protein 0.74 0.32 -0.3
20 AT1G62150 Mitochondrial transcription termination factor family
protein		 0.74 0.29 -0.31
21 AT1G63880 Disease resistance protein (TIR-NBS-LRR class) family 0.73 0.33 -0.32
22 AT4G11100 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G03060.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.73 0.31 -0.32
23 AT1G74320 Protein kinase superfamily protein 0.73 0.33 -0.31
24 AT5G08565 Transcription initiation Spt4-like protein 0.73 0.33 -0.31
25 AT1G62830 LSD1-like 1 ARABIDOPSIS LYSINE-SPECIFIC
HISTONE DEMETHYLASE, ATSWP1,
LSD1-like 1, LYSINE-SPECIFIC
HISTONE DEMETHYLASE, SWP1		 0.72 0.32 -0.31
26 AT5G38630 cytochrome B561-1 cytochrome B561-1, cytochrome
B561-1		 0.72 0.32 -0.31
27 AT1G61730 DNA-binding storekeeper protein-related transcriptional
regulator		 0.72 0.31 -0.3
28 AT1G68370 Chaperone DnaJ-domain superfamily protein ALTERED RESPONSE TO GRAVITY 1 0.72 0.32 -0.32
29 AT5G28500 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT3G04550.1); Has 109 Blast hits to 109 proteins in
49 species: Archae - 0; Bacteria - 67; Metazoa - 0; Fungi -
0; Plants - 41; Viruses - 0; Other Eukaryotes - 1 (source:
NCBI BLink).		 0.72 0.33 -0.31
30 AT4G13050 Acyl-ACP thioesterase 0.72 0.34 -0.33
31 AT5G27110 Tetratricopeptide repeat (TPR)-like superfamily protein 0.71 0.31 -0.32
32 AT1G72170 Domain of unknown function (DUF543) 0.7 0.31 -0.3
33 AT3G53710 ARF-GAP domain 6 ARF-GAP domain 6 0.7 0.31 -0.29
34 AT1G49950 telomere repeat binding factor 1 TELOMERE REPEAT BINDING FACTOR 1,
telomere repeat binding factor 1		 0.7 0.32 -0.3
35 AT3G08020 PHD finger family protein -0.7 0.32 -0.32
36 AT3G54230 suppressor of abi3-5 suppressor of abi3-5 -0.7 0.33 -0.33
37 AT1G66620 Protein with RING/U-box and TRAF-like domains 0.69 0.31 -0.34
38 AT5G15980 Pentatricopeptide repeat (PPR) superfamily protein 0.69 0.32 -0.32
39 AT1G59900 pyruvate dehydrogenase complex E1 alpha subunit pyruvate dehydrogenase complex E1
alpha subunit, pyruvate
dehydrogenase complex E1 alpha
subunit		 0.68 0.27 -0.33
40 AT1G61280 Phosphatidylinositol N-acetylglucosaminyltransferase,
GPI19/PIG-P subunit		 0.68 0.3 -0.31
41 AT4G31770 debranching enzyme 1 ARABIDOPSIS THALIANA DEBRANCHING
ENZYME 1, debranching enzyme 1		 0.68 0.31 -0.32
42 AT1G79070 SNARE-associated protein-related 0.68 0.33 -0.33
43 AT5G20580 BEST Arabidopsis thaliana protein match is: FRIGIDA
interacting protein 1 (TAIR:AT2G06005.1); Has 167 Blast
hits to 167 proteins in 73 species: Archae - 0; Bacteria -
25; Metazoa - 58; Fungi - 25; Plants - 43; Viruses - 0;
Other Eukaryotes - 16 (source: NCBI BLink).		 0.67 0.31 -0.31
44 AT5G04320 Shugoshin C terminus 0.67 0.29 -0.3
45 AT5G06660 Protein of unknown function DUF106, transmembrane 0.67 0.31 -0.32
46 AT5G17890 DA1-related protein 4 CHILLING SENSITIVE 3, DA1-related
protein 4		 0.66 0.3 -0.32
47 AT1G61870 pentatricopeptide repeat 336 pentatricopeptide repeat 336 0.66 0.3 -0.33
48 AT5G49630 amino acid permease 6 amino acid permease 6 0.66 0.32 -0.33
49 AT5G10240 asparagine synthetase 3 asparagine synthetase 3 0.65 0.32 -0.33
50 AT3G42680 transposable element gene 0.65 0.32 -0.33
51 AT1G58100 TCP family transcription factor TCP domain protein 8 0.65 0.32 -0.3
52 AT1G52260 PDI-like 1-5 ARABIDOPSIS THALIANA PROTEIN
DISULFIDE ISOMERASE 3, PDI-like
1-5, PROTEIN DISULFIDE ISOMERASE
3, PDI-like 1-5		 0.65 0.32 -0.32
53 AT3G08890 Protein of unknown function, DUF538 0.64 0.34 -0.36
54 AT1G65440 global transcription factor group B1 global transcription factor group
B1		 -0.64 0.33 -0.32
55 AT4G00550 digalactosyl diacylglycerol deficient 2 digalactosyl diacylglycerol
deficient 2		 -0.64 0.32 -0.31
56 AT3G46270 receptor protein kinase-related 0.64 0.32 -0.29
57 AT1G58150 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: in 9 processes; LOCATED IN: cellular_component
unknown; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 1 Blast hits to 1 proteins in
1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.64 0.34 -0.31
58 AT5G23710 DNA binding;DNA-directed RNA polymerases 0.64 0.3 -0.31
59 AT5G36230 ARM repeat superfamily protein 0.63 0.33 -0.3
60 AT1G59970 Matrixin family protein 0.63 0.29 -0.28
61 AT5G17880 disease resistance protein (TIR-NBS-LRR class) constitutive shade-avoidance1 0.63 0.3 -0.3
62 AT5G37290 ARM repeat superfamily protein 0.63 0.31 -0.32
63 AT5G04560 HhH-GPD base excision DNA repair family protein DEMETER -0.63 0.33 -0.31
64 AT5G35180 Protein of unknown function (DUF1336) -0.63 0.32 -0.32
65 AT1G11250 syntaxin of plants 125 ATSYP125, syntaxin of plants 125 0.63 0.32 -0.3
66 AT1G45160 Protein kinase superfamily protein -0.61 0.29 -0.32
67 AT4G08960 phosphotyrosyl phosphatase activator (PTPA) family protein -0.6 0.29 -0.32
68 AT5G24760 GroES-like zinc-binding dehydrogenase family protein -0.59 0.32 -0.31
69 AT1G48310 chromatin remodeling factor18 CHA18, chromatin remodeling
factor18		 -0.58 0.31 -0.3
70 AT1G54040 epithiospecifier protein epithiospecifier protein,
EPITHIOSPECIFYING SENESCENCE
REGULATOR, TASTY		 -0.58 0.31 -0.32
71 ATMG00650 NADH dehydrogenase subunit 4L NADH dehydrogenase subunit 4L -0.58 0.31 -0.32
72 AT5G45260 Disease resistance protein (TIR-NBS-LRR class) ARABIDOPSIS THALIANA WRKY DOMAIN
PROTEIN 52, RESISTANT TO RALSTONIA
SOLANACEARUM 1, SENSITIVE TO LOW
HUMIDITY 1		 -0.57 0.33 -0.31
73 AT4G32760 ENTH/VHS/GAT family protein -0.57 0.3 -0.32
74 AT1G20160 Subtilisin-like serine endopeptidase family protein ATSBT5.2 -0.57 0.31 -0.3
75 ATMG00060 NADH dehydrogenase subunit 5C NADH DEHYDROGENASE SUBUNIT 5, NADH
DEHYDROGENASE SUBUNIT 5.3, NADH
dehydrogenase subunit 5C		 -0.57 0.29 -0.32
76 AT4G27050 F-box/RNI-like superfamily protein -0.57 0.35 -0.29
77 AT4G19240 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G43280.1); Has 19 Blast hits
to 17 proteins in 2 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.56 0.32 -0.3
78 AT5G20620 ubiquitin 4 ubiquitin 4 -0.56 0.31 -0.3
79 AT1G07120 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast
envelope; EXPRESSED IN: inflorescence meristem, petal, leaf
whorl, flower; EXPRESSED DURING: 4 anthesis, petal
differentiation and expansion stage; BEST Arabidopsis
thaliana protein match is: Tetratricopeptide repeat
(TPR)-like superfamily protein (TAIR:AT4G18570.1); Has 288
Blast hits to 260 proteins in 50 species: Archae - 0;
Bacteria - 8; Metazoa - 27; Fungi - 15; Plants - 163;
Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).		 -0.56 0.31 -0.31
80 AT1G65350 ubiquitin 13 ubiquitin 13 -0.55 0.32 -0.31
81 AT5G15360 unknown protein; Has 4 Blast hits to 4 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.54 0.32 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
82 C0123 Isoleucine D,L-Isoleucine L-Isoleucine tRNA charging,
isoleucine biosynthesis I (from threonine),
jasmonoyl-amino acid conjugates biosynthesis I,
isoleucine degradation I 		-0.9 0.45 -0.46 C0123
83 C0033 4-(Methylsulfinyl)butylglucosinolate - 4-Methylsulfinylbutyl glucosinolate glucosinolate biosynthesis from dihomomethionine 0.84 0.48 -0.43 C0033
84 C0111 Hexa-2-O-glycerol-β-galactopyranoside Hexa-2-O-gllycerol-β-D-galactopyranoside - - -0.82 0.43 -0.45
85 C0038 5-(Methylthio)pentylglucosinolate - 5-Methylthiopentylglucosinolate glucosinolate biosynthesis from trihomomethionine 0.82 0.46 -0.43 C0038
86 C0183 MST_3033.1 - - - 0.78 0.44 -0.43
87 C0258 Tryptophan amide (NH3+) D,L-Tryptophan amide (NH3+) - - -0.77 0.46 -0.43
88 C0034 4-Methylthio-n-butylglucosinolate - 4-Methylthiobutyl glucosinolate glucosinolate biosynthesis from dihomomethionine 0.74 0.3 -0.31 C0034
89 C0244 Sucrose D-Sucrose Sucrose stachyose biosynthesis,
fructan degradation,
stachyose degradation,
galactose degradation III,
superpathway of sucrose and starch metabolism II (photosynthetic tissue),
sucrose degradation III,
UDP-glucose biosynthesis (from sucrose),
ajugose biosynthesis II (galactinol-independent),
sucrose biosynthesis I 		0.7 0.3 -0.32 C0244
90 C0140 Lysine L-Lysine L-Lysine lysine degradation II,
tRNA charging,
lysine biosynthesis VI,
lysine degradation I 		-0.54 0.29 -0.3 C0140