AT3G54220 : SCARECROW
Query Information
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AGICode AT3G54220
Description GRAS family transcription factor
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G54220 GRAS family transcription factor SCARECROW, SHOOT GRAVITROPISM 1 1 0.29 -0.3
2 AT4G10790 UBX domain-containing protein -0.73 0.31 -0.31
3 AT1G75020 lysophosphatidyl acyltransferase 4 lysophosphatidyl acyltransferase 4 -0.72 0.29 -0.3
4 AT5G19030 RNA-binding (RRM/RBD/RNP motifs) family protein -0.72 0.31 -0.31
5 AT1G04030 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G44040.1); Has 1835 Blast hits
to 1511 proteins in 238 species: Archae - 7; Bacteria -
164; Metazoa - 377; Fungi - 135; Plants - 187; Viruses -
22; Other Eukaryotes - 943 (source: NCBI BLink).		 0.69 0.33 -0.34
6 AT4G37740 growth-regulating factor 2 growth-regulating factor 2,
growth-regulating factor 2		 0.69 0.3 -0.32
7 AT1G63100 GRAS family transcription factor 0.68 0.31 -0.31
8 AT3G22790 Kinase interacting (KIP1-like) family protein 0.68 0.3 -0.32
9 AT3G51500 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 23 Blast hits to 23 proteins
in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 -0.68 0.32 -0.31
10 AT3G28480 Oxoglutarate/iron-dependent oxygenase -0.68 0.31 -0.37
11 AT1G09920 TRAF-type zinc finger-related -0.66 0.32 -0.32
12 AT3G54990 Integrase-type DNA-binding superfamily protein SCHLAFMUTZE -0.65 0.32 -0.3
13 AT5G63130 Octicosapeptide/Phox/Bem1p family protein -0.65 0.3 -0.29
14 AT5G61210 soluble N-ethylmaleimide-sensitive factor adaptor protein
33		 ATSNAP33, ATSNAP33B, soluble
N-ethylmaleimide-sensitive factor
adaptor protein 33, SNP33		 -0.65 0.3 -0.32
15 AT2G40070 BEST Arabidopsis thaliana protein match is: proline-rich
family protein (TAIR:AT3G09000.1); Has 35333 Blast hits to
34131 proteins in 2444 species: Archae - 798; Bacteria -
22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses -
0; Other Eukaryotes - 9610 (source: NCBI BLink).		 0.65 0.31 -0.32
16 AT3G62790 NADH-ubiquinone oxidoreductase-related -0.64 0.29 -0.3
17 AT2G20000 CDC27 family protein CDC27b, HOBBIT 0.64 0.31 -0.31
18 AT3G53320 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G37070.1); Has 11044 Blast
hits to 5993 proteins in 551 species: Archae - 8; Bacteria
- 1486; Metazoa - 4078; Fungi - 1814; Plants - 348; Viruses
- 112; Other Eukaryotes - 3198 (source: NCBI BLink).		 0.64 0.31 -0.31
19 AT2G21510 DNAJ heat shock N-terminal domain-containing protein -0.64 0.32 -0.31
20 AT2G01630 O-Glycosyl hydrolases family 17 protein 0.64 0.32 -0.32
21 AT2G39370 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G37380.1); Has 184 Blast hits
to 178 proteins in 53 species: Archae - 0; Bacteria - 58;
Metazoa - 9; Fungi - 0; Plants - 103; Viruses - 0; Other
Eukaryotes - 14 (source: NCBI BLink).		 MEMBRANE-ASSOCIATED KINASE
REGULATOR 4		 0.64 0.34 -0.32
22 AT2G33410 RNA-binding (RRM/RBD/RNP motifs) family protein 0.64 0.32 -0.32
23 AT5G47600 HSP20-like chaperones superfamily protein 0.63 0.31 -0.31
24 AT4G10330 glycine-rich protein -0.63 0.31 -0.31
25 AT1G19300 Nucleotide-diphospho-sugar transferases superfamily protein ATGATL1,
GALACTURONOSYLTRANSFERASE-LIKE 1,
GAOLAOZHUANGREN 1, PARVUS		 -0.63 0.35 -0.31
26 AT1G02750 Drought-responsive family protein -0.63 0.31 -0.32
27 AT1G76185 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G20460.1); Has 37 Blast hits
to 37 proteins in 11 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 37; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.63 0.33 -0.31
28 AT5G53650 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to
17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink).		 -0.63 0.33 -0.33
29 AT4G11130 RNA-dependent RNA polymerase 2 RNA-dependent RNA polymerase 2,
SILENCING MOVEMENT DEFICIENT 1		 0.63 0.32 -0.3
30 AT3G13662 Disease resistance-responsive (dirigent-like protein)
family protein		 -0.63 0.29 -0.31
31 AT3G03100 NADH:ubiquinone oxidoreductase, 17.2kDa subunit -0.63 0.33 -0.32
32 AT2G18120 SHI-related sequence 4 SHI-related sequence 4 0.63 0.32 -0.32
33 AT3G10620 nudix hydrolase homolog 26 nudix hydrolase homolog 26, nudix
hydrolase homolog 26		 -0.62 0.31 -0.32
34 AT3G13050 Major facilitator superfamily protein AtNiaP, nicotinate transporter -0.62 0.3 -0.32
35 AT5G28620 protein kinase C-related -0.62 0.31 -0.33
36 AT4G26870 Class II aminoacyl-tRNA and biotin synthetases superfamily
protein		 0.62 0.32 -0.32
37 AT1G76360 Protein kinase superfamily protein -0.62 0.32 -0.3
38 AT4G32930 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF866, eukaryotic (InterPro:IPR008584);
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996
(source: NCBI BLink).		 -0.62 0.33 -0.32
39 AT3G19870 unknown protein; Has 84 Blast hits to 64 proteins in 35
species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 0;
Plants - 24; Viruses - 0; Other Eukaryotes - 29 (source:
NCBI BLink).		 0.62 0.33 -0.32
40 AT5G37480 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.61 0.28 -0.3
41 AT2G30270 Protein of unknown function (DUF567) -0.61 0.31 -0.32
42 AT2G40880 cystatin A cystatin A, cystatin A, FL3-27 -0.61 0.33 -0.32
43 AT2G39770 Glucose-1-phosphate adenylyltransferase family protein CYTOKINESIS DEFECTIVE 1, EMBRYO
DEFECTIVE 101, GDP-MANNOSE
PYROPHOSPHORYLASE 1, SENSITIVE TO
OZONE 1, VITAMIN C DEFECTIVE 1		 -0.61 0.3 -0.31
44 AT3G01910 sulfite oxidase AT-SO, AtSO, sulfite oxidase -0.61 0.31 -0.3
45 AT4G39890 RAB GTPase homolog H1C RAB GTPase homolog H1C, RAB GTPase
homolog H1C		 -0.61 0.31 -0.3
46 AT1G34780 APR-like 4 APR-like 4, APR-like 4 -0.61 0.32 -0.3
47 AT1G55200 Protein kinase protein with adenine nucleotide alpha
hydrolases-like domain		 0.6 0.32 -0.33
48 AT4G00340 receptor-like protein kinase 4 receptor-like protein kinase 4 0.6 0.33 -0.3
49 AT5G52580 RabGAP/TBC domain-containing protein -0.6 0.31 -0.31
50 AT5G67100 DNA-directed DNA polymerases INCURVATA2 0.6 0.32 -0.33
51 AT5G10100 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 trehalose-6-phosphate phosphatase
I		 0.6 0.34 -0.3
52 AT3G15810 Protein of unknown function (DUF567) -0.6 0.31 -0.32
53 AT1G06650 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.6 0.32 -0.32
54 AT1G75920 GDSL-like Lipase/Acylhydrolase superfamily protein -0.6 0.3 -0.3
55 AT3G13410 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endoplasmic reticulum; EXPRESSED IN: 25 plant structures;
EXPRESSED DURING: 15 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G55546.1); Has 49 Blast hits to 49 proteins in 14
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 48; Viruses - 0; Other Eukaryotes - 1 (source:
NCBI BLink).		 -0.59 0.32 -0.31
56 AT1G01230 ORMDL family protein -0.59 0.33 -0.32
57 AT3G61920 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; LOCATED IN:
cellular_component unknown; EXPRESSED IN: shoot, hypocotyl,
root, egg cell; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT1G64700.1); Has 77 Blast hits to 77
proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.59 0.29 -0.3
58 AT5G60210 ROP interactive partner 5 ROP interactive partner 5 0.59 0.29 -0.29
59 AT1G11130 Leucine-rich repeat protein kinase family protein SCRAMBLED, STRUBBELIG-RECEPTOR
FAMILY 9, STRUBBELIG		 0.59 0.33 -0.32
60 AT1G28250 unknown protein; Has 22 Blast hits to 22 proteins in 10
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.59 0.3 -0.32
61 AT3G61690 nucleotidyltransferases 0.59 0.32 -0.33
62 AT5G14930 senescence-associated gene 101 senescence-associated gene 101 -0.59 0.31 -0.32
63 AT2G23040 unknown protein; Has 8 Blast hits to 8 proteins in 3
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.58 0.3 -0.34
64 AT2G34710 Homeobox-leucine zipper family protein / lipid-binding
START domain-containing protein		 ATHB-14, ARABIDOPSIS THALIANA
HOMEOBOX PROTEIN 14, PHABULOSA,
PHABULOSA 1D		 0.58 0.31 -0.32
65 AT1G24520 homolog of Brassica campestris pollen protein 1 homolog of Brassica campestris
pollen protein 1		 -0.58 0.32 -0.32
66 AT4G36260 Lateral root primordium (LRP) protein-related SHI RELATED SEQUENCE 2, STYLISH 2 0.58 0.33 -0.31
67 AT3G19553 Amino acid permease family protein -0.58 0.32 -0.32
68 AT2G19600 K+ efflux antiporter 4 K+ efflux antiporter 4, KEA4, K+
efflux antiporter 4		 0.58 0.34 -0.31
69 AT1G31650 RHO guanyl-nucleotide exchange factor 14 ATROPGEF14, RHO guanyl-nucleotide
exchange factor 14		 0.58 0.34 -0.32
70 AT5G14710 CONTAINS InterPro DOMAIN/s: Proteasome assembly chaperone 3
(InterPro:IPR018788); Has 120 Blast hits to 120 proteins in
47 species: Archae - 0; Bacteria - 0; Metazoa - 62; Fungi -
2; Plants - 49; Viruses - 0; Other Eukaryotes - 7 (source:
NCBI BLink).		 -0.58 0.3 -0.31
71 AT4G37890 Zinc finger (C3HC4-type RING finger) family protein embryo sac development arrest 40 0.58 0.3 -0.31
72 AT3G12950 Trypsin family protein 0.57 0.32 -0.32
73 AT5G26680 5'-3' exonuclease family protein 0.57 0.32 -0.33
74 AT3G27580 Protein kinase superfamily protein ATPK7, D6 PROTEIN KINASE LIKE 3 0.57 0.33 -0.32
75 AT3G17340 ARM repeat superfamily protein 0.57 0.33 -0.3
76 AT1G11710 Pentatricopeptide repeat (PPR) superfamily protein 0.55 0.31 -0.3
77 AT3G60650 unknown protein; Has 10 Blast hits to 10 proteins in 5
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.54 0.29 -0.31
78 AT3G16620 translocon outer complex protein 120 ARABIDOPSIS THALIANA TRANSLOCON
OUTER COMPLEX PROTEIN 120,
translocon outer complex protein
120		 0.54 0.33 -0.32
79 AT1G77760 nitrate reductase 1 GNR1, nitrate reductase 1, NITRATE
REDUCTASE 1		 0.54 0.33 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
80 C0193 Pantothenic acid D,L-Pantothenic acid Pantothenate pantothenate biosynthesis -0.75 0.45 -0.45 C0193
81 C0072 Cyanidin 3-O-[2''-O-(xylosyl) glucoside] 5-O-glucoside - - - -0.71 0.44 -0.49
82 C0184 MST_3110.4 - - - -0.68 0.44 -0.43
83 C0009 myo-Inositol - myo-Inositol stachyose biosynthesis,
UDP-D-glucuronate biosynthesis (from myo-inositol),
1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza),
D-myo-inositol (1,4,5)-trisphosphate degradation,
galactosylcyclitol biosynthesis,
D-myo-inositol (1,4,5)-trisphosphate biosynthesis,
phytate degradation I,
myo-inositol biosynthesis,
ajugose biosynthesis I (galactinol-dependent),
phospholipid biosynthesis II 		-0.67 0.47 -0.46 C0009
84 C0169 MST_2105.7 - - - -0.67 0.47 -0.48
85 C0180 MST_2539.9 - - - -0.67 0.47 -0.48
86 C0130 Kaempferol-3-O-α-rhamnopyranosyl(1,2)-β-glucopyranoside-7-O-α-rhamnopyranoside Kaempferol-3-O-α-L-rhamnopyranosyl(1,2)-β-D-glucopyranoside-7-O-α-L-rhamnopyranoside - -0.65 0.46 -0.45
87 C0141 Malic acid D,L-Malic acid (RS)-Malate sinapate ester biosynthesis,
superpathway of glyoxylate cycle and fatty acid degradation,
TCA cycle variation III (eukaryotic),
glyoxylate cycle,
aspartate degradation II,
TCA cycle variation V (plant),
gluconeogenesis I,
glycolate and glyoxylate degradation II 		-0.58 0.31 -0.31 C0141