AT3G42900 : -
Query Information
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AGICode AT3G42900
Description transposable element gene
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G42900 transposable element gene 1 0.33 -0.3
2 AT5G03280 NRAMP metal ion transporter family protein ATEIN2, CYTOKININ RESISTANT 1,
ETHYLENE INSENSITIVE 2, ENHANCED
RESPONSE TO ABA3, ORESARA 2,
ORESARA 3, PIR2		 -0.72 0.31 -0.32
3 AT1G67570 Protein of unknown function (DUF3537) -0.67 0.33 -0.3
4 AT4G25610 C2H2-like zinc finger protein 0.66 0.3 -0.33
5 AT4G18470 negative regulator of systemic acquired resistance (SNI1) SUPPRESSOR OF NPR1-1, INDUCIBLE 1 -0.64 0.33 -0.33
6 AT3G56700 fatty acid reductase 6 AtFAR6, fatty acid reductase 6 0.63 0.31 -0.3
7 AT4G11690 Pentatricopeptide repeat (PPR-like) superfamily protein -0.63 0.31 -0.3
8 AT5G18940 Mo25 family protein -0.62 0.31 -0.31
9 AT3G42730 transposable element gene 0.62 0.32 -0.33
10 AT3G03240 alpha/beta-Hydrolases superfamily protein -0.62 0.32 -0.3
11 AT4G07430 transposable element gene 0.61 0.33 -0.31
12 AT5G14470 GHMP kinase family protein 0.61 0.31 -0.33
13 AT1G77680 Ribonuclease II/R family protein -0.61 0.35 -0.33
14 AT1G69840 SPFH/Band 7/PHB domain-containing membrane-associated
protein family		 0.61 0.29 -0.32
15 AT1G14550 Peroxidase superfamily protein -0.61 0.33 -0.3
16 AT3G16970 Plant self-incompatibility protein S1 family 0.6 0.31 -0.35
17 AT3G12950 Trypsin family protein -0.6 0.3 -0.33
18 AT2G06390 transposable element gene -0.6 0.32 -0.31
19 AT2G30300 Major facilitator superfamily protein -0.6 0.32 -0.31
20 AT1G34080 transposable element gene -0.6 0.3 -0.32
21 AT4G08210 Pentatricopeptide repeat (PPR-like) superfamily protein -0.6 0.3 -0.31
22 AT2G07300 transposable element gene 0.59 0.31 -0.31
23 AT3G49162 pseudogene of glycoside hydrolase family 28 protein 0.59 0.32 -0.31
24 AT3G49950 GRAS family transcription factor -0.58 0.31 -0.31
25 AT1G01280 cytochrome P450, family 703, subfamily A, polypeptide 2 CYP703, cytochrome P450, family
703, subfamily A, polypeptide 2		 -0.57 0.31 -0.33
26 AT5G58782 Undecaprenyl pyrophosphate synthetase family protein 0.56 0.32 -0.32
27 AT5G11940 Subtilase family protein 0.55 0.31 -0.33
28 AT4G32030 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G80610.1); Has 63 Blast hits
to 59 proteins in 12 species: Archae - 0; Bacteria - 0;
Metazoa - 6; Fungi - 0; Plants - 53; Viruses - 0; Other
Eukaryotes - 4 (source: NCBI BLink).		 0.55 0.34 -0.33
29 AT4G03090 sequence-specific DNA binding;sequence-specific DNA binding
transcription factors		 -0.55 0.33 -0.3
30 AT1G73850 Protein of unknown function (DUF1666) 0.55 0.31 -0.31
31 AT3G13772 transmembrane nine 7 AtTMN7, transmembrane nine 7 -0.55 0.33 -0.32
32 ATMG01410 open reading frame 204 open reading frame 204 0.55 0.34 -0.31
33 AT3G56670 BEST Arabidopsis thaliana protein match is: F-box and
associated interaction domains-containing protein
(TAIR:AT1G32420.1); Has 58 Blast hits to 47 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 58; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.55 0.32 -0.32
34 AT5G64870 SPFH/Band 7/PHB domain-containing membrane-associated
protein family		 0.55 0.32 -0.31
35 AT3G45220 Serine protease inhibitor (SERPIN) family protein 0.54 0.31 -0.32
36 AT1G33830 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.54 0.33 -0.3
37 AT5G42640 C2H2 and C2HC zinc fingers superfamily protein 0.54 0.3 -0.33
38 AT4G31970 cytochrome P450, family 82, subfamily C, polypeptide 2 cytochrome P450, family 82,
subfamily C, polypeptide 2		 -0.54 0.31 -0.33
39 AT2G35510 similar to RCD one 1 similar to RCD one 1 -0.54 0.32 -0.31
40 AT3G58080 unknown protein; Has 3 Blast hits to 3 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.54 0.32 -0.31
41 AT3G13370 unknown protein; Has 84 Blast hits to 50 proteins in 21
species: Archae - 0; Bacteria - 2; Metazoa - 51; Fungi - 6;
Plants - 20; Viruses - 0; Other Eukaryotes - 5 (source:
NCBI BLink).		 -0.54 0.33 -0.34
42 AT5G54070 heat shock transcription factor A9 ARABIDOPSIS THALIANA HEAT SHOCK
TRANSCRIPTION FACTOR A9, heat
shock transcription factor A9		 0.53 0.33 -0.32
43 AT5G27240 DNAJ heat shock N-terminal domain-containing protein -0.53 0.29 -0.31
44 AT5G62250 microtubule-associated protein 65-9 microtubule-associated protein
65-9		 0.53 0.31 -0.31
45 AT1G71770 poly(A)-binding protein 5 poly(A)-binding protein 5 0.53 0.33 -0.3
46 AT1G10870 ARF-GAP domain 4 ARF-GAP domain 4 -0.52 0.32 -0.32
47 AT5G46295 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G06475.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.52 0.32 -0.31
48 AT3G32260 Nucleic acid-binding proteins superfamily 0.52 0.34 -0.3
49 AT5G33340 Eukaryotic aspartyl protease family protein CONSTITUTIVE DISEASE RESISTANCE 1 0.52 0.32 -0.32
50 AT1G48820 Terpenoid cyclases/Protein prenyltransferases superfamily
protein		 0.52 0.33 -0.31
51 AT1G62680 Pentatricopeptide repeat (PPR) superfamily protein -0.52 0.31 -0.33
52 AT2G18260 syntaxin of plants 112 ATSYP112, syntaxin of plants 112 -0.52 0.31 -0.33
53 AT3G31380 transposable element gene -0.51 0.33 -0.32
54 AT3G59070 Cytochrome b561/ferric reductase transmembrane with DOMON
related domain		 0.51 0.32 -0.3
55 AT2G25340 vesicle-associated membrane protein 712 vesicle-associated membrane
protein 712, VAMP712,
vesicle-associated membrane
protein 712		 0.51 0.32 -0.34
56 AT4G11140 cytokinin response factor 1 cytokinin response factor 1 -0.51 0.3 -0.29
57 AT3G45380 transposable element gene 0.51 0.31 -0.3
58 AT3G59260 pirin, putative 0.5 0.33 -0.3
59 AT5G35800 transposable element gene 0.5 0.31 -0.32
60 AT5G62110 Homeodomain-like superfamily protein -0.5 0.33 -0.31
61 AT1G44750 purine permease 11 purine permease 11, purine
permease 11		 -0.5 0.31 -0.34
62 AT2G34230 Protein with domains of unknown function (DUF627 and
DUF629)		 -0.49 0.3 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
63 C0015 p-Coumaric acid - 4-Coumarate scopoletin biosynthesis,
free phenylpropanoid acid biosynthesis,
phenylpropanoid biosynthesis,
simple coumarins biosynthesis,
4-hydroxybenzoate biosynthesis V,
suberin biosynthesis,
phenylpropanoid biosynthesis, initial reactions,
flavonoid biosynthesis 		-0.71 0.47 -0.42 C0015
64 C0056 AMP - AMP PRPP biosynthesis I,
fatty acid biosynthesis (plant mitochondria),
adenine and adenosine salvage VI,
biotin-carboxyl carrier protein assembly,
molybdenum cofactor biosynthesis II (eukaryotes),
gluconeogenesis I,
adenine and adenosine salvage II,
asparagine biosynthesis I,
L-glutamine biosynthesis II (tRNA-dependent),
trans-cinnamoyl-CoA biosynthesis,
IAA degradation V,
ethanol degradation II (cytosol),
arginine biosynthesis I,
IAA degradation IV,
fatty acid activation,
selenate reduction,
IAA biosynthesis VII,
4-hydroxybenzoate biosynthesis V,
tetrapyrrole biosynthesis I,
flavonoid biosynthesis,
indole-3-acetyl-amino acid biosynthesis,
glutamine biosynthesis III,
ethanol degradation IV (peroxisomal),
glycolysis I,
asparagine biosynthesis III (tRNA-dependent),
jasmonoyl-amino acid conjugates biosynthesis I,
molybdenum cofactor biosynthesis,
pyridine nucleotide cycling (plants),
scopoletin biosynthesis,
jasmonic acid biosynthesis,
adenosine nucleotides degradation I,
fatty acid beta-oxidation II (core pathway),
simple coumarins biosynthesis,
sulfate reduction II (assimilatory),
pantothenate biosynthesis,
sporopollenin precursor biosynthesis,
urea cycle,
thiamine biosynthesis II,
starch degradation II,
NAD biosynthesis I (from aspartate),
citrulline-nitric oxide cycle,
beta-alanine biosynthesis II,
arginine biosynthesis II (acetyl cycle),
suberin biosynthesis,
linoleate biosynthesis I (plants),
trans-zeatin biosynthesis,
tetrahydrofolate biosynthesis II,
purine nucleotides de novo biosynthesis II,
phenylpropanoid biosynthesis,
6-hydroxymethyl-dihydropterin diphosphate biosynthesis I,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
tRNA charging 		-0.7 0.45 -0.42 C0056
65 C0262 UDP-glucuronic acid - UDP-D-glucuronate xylan biosynthesis,
UDP-D-glucuronate biosynthesis (from myo-inositol),
UDP-D-galacturonate biosynthesis I (from UDP-D-glucuronate),
UDP-D-apiose biosynthesis (from UDP-D-glucuronate),
galactose degradation III,
UDP-D-xylose and UDP-D-glucuronate biosynthesis 		-0.69 0.44 -0.42 C0262
66 C0073 Cysteine L-Cysteine L-Cysteine alanine biosynthesis III,
cysteine biosynthesis I,
gamma-glutamyl cycle (plant pathway),
farnesylcysteine salvage pathway,
molybdenum cofactor biosynthesis,
thiamine biosynthesis II,
cyanide detoxification II,
indole glucosinolate breakdown (insect chewing induced),
glutathione degradation,
glutathione biosynthesis,
molybdenum cofactor biosynthesis II (eukaryotes),
cyanide degradation,
homocysteine and cysteine interconversion,
methionine biosynthesis II,
tRNA charging,
gamma-glutamyl cycle,
coenzyme A biosynthesis 		-0.68 0.42 -0.44 C0073
67 C0006 β-Homothreonine L-β-Homothreonine - - -0.68 0.43 -0.42
68 C0088 FAD - FAD cytokinins degradation,
lysine degradation II,
valine degradation I,
isoleucine degradation I,
flavin biosynthesis I (bacteria and plants) 		-0.64 0.44 -0.42 C0088
69 C0261 UDP-glucose - UDP-D-glucose quercetin glucoside biosynthesis (Arabidopsis),
abscisic acid glucose ester biosynthesis,
anthocyanin biosynthesis (delphinidin 3-O-glucoside),
UDP-glucose biosynthesis (from sucrose),
2,4,6-trinitrotoluene degradation,
galactose degradation I (Leloir pathway),
cytokinins-O-glucoside biosynthesis,
trehalose biosynthesis I,
dolichyl-diphosphooligosaccharide biosynthesis,
phenolic malonylglucosides biosynthesis,
callose biosynthesis,
superpathway of anthocyanin biosynthesis (from cyanidin and cyanidin 3-O-glucoside),
glucosinolate biosynthesis from hexahomomethionine,
coniferin metabolism,
glucosinolate biosynthesis from phenylalanine,
xyloglucan biosynthesis,
glucosinolate biosynthesis from pentahomomethionine,
anthocyanin biosynthesis (pelargonidin 3-O-glucoside, cyanidin 3-O-glucoside),
glucosinolate biosynthesis from dihomomethionine,
cellulose biosynthesis,
sinapate ester biosynthesis,
superpathway of IAA conjugate biosynthesis,
salicylate glucosides biosynthesis IV,
sucrose biosynthesis I,
glucosinolate biosynthesis from trihomomethionine,
tetrahydrofolate biosynthesis II,
sucrose degradation III,
UDP-D-xylose and UDP-D-glucuronate biosynthesis,
coumarin biosynthesis (via 2-coumarate),
superpathway of sucrose and starch metabolism I (non-photosynthetic tissue),
monolignol glucosides biosynthesis,
glucosinolate biosynthesis from homomethionine,
kaempferol glucoside biosynthesis (Arabidopsis),
salicylate glucosides biosynthesis III,
cytokinins 7-N-glucoside biosynthesis,
galactose degradation III,
cytokinins 9-N-glucoside biosynthesis,
glucosinolate biosynthesis from tryptophan,
UDP-galactose biosynthesis,
salicylate glucosides biosynthesis II,
stachyose degradation,
superpathway of sucrose and starch metabolism II (photosynthetic tissue),
UDP-glucose biosynthesis (from glucose 6-phosphate),
sphingolipid biosynthesis (plants),
glucosinolate biosynthesis from tetrahomomethionine,
galactose degradation II,
UDP-L-rhamnose biosynthesis 		-0.64 0.43 -0.46 C0261
70 C0075 dGDP - dGDP purine nucleotide metabolism (phosphotransfer and nucleotide modification) -0.63 0.44 -0.44 C0075
71 C0091 Fructose-1,6-bisphosphate D-Fructose-1,6-bisphosphate Fructose-1,6-bisphosphate gluconeogenesis I,
Calvin-Benson-Bassham cycle,
glycolysis IV (plant cytosol),
glycolysis I,
CA1P biosynthesis,
sucrose biosynthesis I 		-0.61 0.47 -0.45 C0091
72 C0066 Choline - Choline choline biosynthesis III,
phosphatidylcholine biosynthesis I,
choline biosynthesis I,
glycine betaine biosynthesis III (plants),
choline biosynthesis II,
sinapate ester biosynthesis,
phospholipases 		-0.57 0.32 -0.31 C0066
73 C0218 Pyridoxamine phosphate Pyridoxamine-5'-phosphate Pyridoxamine-5'-phosphate pyridoxal 5'-phosphate salvage pathway -0.55 0.32 -0.31 C0218
74 C0058 Arginine D,L-Arginine L-Arginine arginine degradation VI (arginase 2 pathway),
arginine degradation I (arginase pathway),
arginine biosynthesis I,
putrescine biosynthesis II,
nitric oxide biosynthesis I (in plants),
citrulline biosynthesis,
putrescine biosynthesis I,
tRNA charging,
arginine biosynthesis II (acetyl cycle),
citrulline-nitric oxide cycle,
urea cycle,
L-Ndelta-acetylornithine biosynthesis 		-0.51 0.31 -0.32 C0058