AT4G34350 : CHLOROPLAST BIOGENESIS 6
Query Information
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AGICode AT4G34350
Description 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G34350 4-hydroxy-3-methylbut-2-enyl diphosphate reductase CHLOROPLAST BIOGENESIS 6,
4-hydroxy-3-methylbut-2-enyl
diphosphate reductase, ISPH		 1 0.31 -0.33
2 AT5G06580 FAD-linked oxidases family protein 0.73 0.31 -0.32
3 AT5G60750 CAAX amino terminal protease family protein 0.71 0.3 -0.31
4 AT4G33350 Tic22-like family protein translocon at the inner envelope
membrane of chloroplasts 22-IV,
translocon at the inner envelope
membrane of chloroplasts 22-IV		 0.7 0.32 -0.33
5 AT4G17420 Tryptophan RNA-binding attenuator protein-like 0.69 0.32 -0.33
6 AT1G78140 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.69 0.32 -0.31
7 AT3G02900 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT5G16660.1); Has 80 Blast
hits to 80 proteins in 21 species: Archae - 0; Bacteria -
4; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.68 0.3 -0.33
8 AT5G10490 MSCS-like 2 MSCS-like 2 0.68 0.31 -0.3
9 AT1G24575 unknown protein; Has 7 Blast hits to 7 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.68 0.33 -0.3
10 AT2G39080 NAD(P)-binding Rossmann-fold superfamily protein EMBRYO DEFECTIVE 2799 0.68 0.3 -0.32
11 AT1G22750 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF1475 (InterPro:IPR009943);
Has 185 Blast hits to 155 proteins in 21 species: Archae -
0; Bacteria - 8; Metazoa - 3; Fungi - 0; Plants - 64;
Viruses - 0; Other Eukaryotes - 110 (source: NCBI BLink).		 0.67 0.32 -0.32
12 AT2G27600 AAA-type ATPase family protein ATSKD1, SUPPRESSOR OF K+ TRANSPORT
GROWTH DEFECT1, VACUOLAR PROTEIN
SORTING 4		 0.67 0.34 -0.3
13 AT1G07700 Thioredoxin superfamily protein 0.66 0.29 -0.29
14 AT3G54660 glutathione reductase ATGR2, EMB2360, glutathione
reductase		 0.66 0.33 -0.31
15 AT3G09920 phosphatidyl inositol monophosphate 5 kinase phosphatidyl inositol
monophosphate 5 kinase		 0.66 0.33 -0.33
16 AT3G56460 GroES-like zinc-binding alcohol dehydrogenase family
protein		 0.66 0.33 -0.31
17 AT1G21640 NAD kinase 2 NAD KINASE 2, NAD kinase 2 0.65 0.31 -0.31
18 AT1G04985 unknown protein; Has 37 Blast hits to 37 proteins in 11
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.64 0.3 -0.32
19 AT1G70610 transporter associated with antigen processing protein 1 ATP-binding cassette B26,
transporter associated with
antigen processing protein 1,
transporter associated with
antigen processing protein 1		 0.64 0.33 -0.31
20 AT2G20860 lipoic acid synthase 1 lipoic acid synthase 1 0.64 0.33 -0.31
21 AT1G50500 Membrane trafficking VPS53 family protein ARABIDOPSIS THALIANA VPS53
HOMOLOG, HEAT-INTOLERANT 1, VPS53		 0.62 0.32 -0.33
22 AT1G53670 methionine sulfoxide reductase B 1 ATMSRB1, methionine sulfoxide
reductase B 1		 0.62 0.3 -0.33
23 AT2G44620 mitochondrial acyl carrier protein 1 mitochondrial acyl carrier protein
1, MITOCHONDRIAL ACYL CARRIER
PROTEIN 1		 0.62 0.35 -0.3
24 AT5G17290 autophagy protein Apg5 family AUTOPHAGY 5, ATATG5, AUTOPHAGY 5 0.62 0.32 -0.31
25 AT4G04630 Protein of unknown function, DUF584 -0.61 0.33 -0.3
26 AT1G25380 NAD+ transporter 2 ARABIDOPSIS THALIANA NAD+
TRANSPORTER 2, NAD+ transporter 2		 0.61 0.29 -0.31
27 AT5G52570 beta-carotene hydroxylase 2 B2, BETA CAROTENOID HYDROXYLASE 2,
beta-carotene hydroxylase 2, CHY2		 0.6 0.32 -0.31
28 AT2G13560 NAD-dependent malic enzyme 1 NAD-dependent malic enzyme 1 0.6 0.33 -0.33
29 AT2G39550 Prenyltransferase family protein GERANYLGERANYLTRANSFERASE-I BETA
SUBUNIT, GGB, PGGT-I		 0.6 0.3 -0.31
30 AT5G17530 phosphoglucosamine mutase family protein 0.6 0.32 -0.29
31 AT2G18500 ovate family protein 7 ARABIDOPSIS THALIANA OVATE FAMILY
PROTEIN 7, ovate family protein 7		 -0.59 0.33 -0.33
32 AT1G76190 SAUR-like auxin-responsive protein family 0.59 0.3 -0.34
33 AT5G23520 smr (Small MutS Related) domain-containing protein 0.58 0.3 -0.32
34 AT1G69970 CLAVATA3/ESR-RELATED 26 CLAVATA3/ESR-RELATED 26 0.58 0.3 -0.31
35 AT5G44870 Disease resistance protein (TIR-NBS-LRR class) family LAZARUS 5, tolerance to Tobacco
ringspot virus 1		 0.58 0.31 -0.31
36 AT2G38020 vacuoleless1 (VCL1) EMB258, MANGLED, VACUOLELESS 1 0.58 0.32 -0.32
37 AT2G31830 endonuclease/exonuclease/phosphatase family protein -0.58 0.32 -0.3
38 AT3G26750 CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme
E2C-binding protein (InterPro:IPR019193); Has 26 Blast hits
to 25 proteins in 9 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.58 0.31 -0.31
39 AT3G05190 D-aminoacid aminotransferase-like PLP-dependent enzymes
superfamily protein		 -0.57 0.31 -0.31
40 AT4G33160 F-box family protein -0.57 0.33 -0.3
41 AT2G35170 Histone H3 K4-specific methyltransferase SET7/9 family
protein		 -0.57 0.32 -0.31
42 AT1G72240 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G22470.1); Has 65 Blast hits
to 63 proteins in 13 species: Archae - 0; Bacteria - 0;
Metazoa - 1; Fungi - 0; Plants - 64; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.56 0.32 -0.31
43 AT5G25120 ytochrome p450, family 71, subfamily B, polypeptide 11 ytochrome p450, family 71,
subfamily B, polypeptide 11		 -0.56 0.3 -0.32
44 AT2G31160 Protein of unknown function (DUF640) LIGHT SENSITIVE HYPOCOTYLS 3,
ORGAN BOUNDARY 1		 -0.55 0.34 -0.3
45 AT4G38210 expansin A20 ATEXP20, expansin A20, ATHEXP
ALPHA 1.23, EXPANSIN 20, expansin
A20		 -0.54 0.3 -0.32
46 AT3G21090 ABC-2 type transporter family protein ATP-binding cassette G15 -0.53 0.31 -0.32
47 AT5G67520 adenosine-5'-phosphosulfate (APS) kinase 4 adenosine-5'-phosphosulfate (APS)
kinase 4		 -0.52 0.33 -0.3
48 AT2G33830 Dormancy/auxin associated family protein -0.51 0.33 -0.31
49 AT2G41010 calmodulin (CAM)-binding protein of 25 kDa calmodulin (CAM)-binding protein
of 25 kDa, calmodulin
(CAM)-binding protein of 25 kDa		 -0.51 0.32 -0.36
50 AT3G15530 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.51 0.31 -0.3
51 AT3G43080 transposable element gene -0.5 0.33 -0.31
52 AT3G30330 transposable element gene -0.5 0.32 -0.3
53 AT3G45860 cysteine-rich RLK (RECEPTOR-like protein kinase) 4 cysteine-rich RLK (RECEPTOR-like
protein kinase) 4		 -0.49 0.32 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
54 C0230 Rutin - - polyphenol biosynthesis -0.71 0.49 -0.46
55 C0110 Guanosine - Guanosine guanosine nucleotides degradation I,
guanine and guanosine salvage II,
guanosine nucleotides degradation II,
guanine and guanosine salvage III 		0.69 0.42 -0.45 C0110
56 C0117 Hydroxyproline (2S,4R)-Hydroxyproline 4-Hydroxy-L-proline protein precursor 0.63 0.44 -0.45 C0117