AT4G31880 : -
Query Information
Cytoscape Web will replace the contents of this div with your graph.
AGICode AT4G31880
Description LOCATED IN: cytosol, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT superfamily protein (TAIR:AT1G15940.1); Has 137162 Blast hits to 70781 proteins in 2973 species: Archae - 289; Bacteria - 24182; Metazoa - 56725; Fungi - 20130; Plants - 6559; Viruses - 758; Other Eukaryotes - 28519 (source: NCBI BLink).
Gene information
Help   
  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G31880 LOCATED IN: cytosol, chloroplast; EXPRESSED IN: 24 plant
structures; EXPRESSED DURING: 14 growth stages; BEST
Arabidopsis thaliana protein match is: Tudor/PWWP/MBT
superfamily protein (TAIR:AT1G15940.1); Has 137162 Blast
hits to 70781 proteins in 2973 species: Archae - 289;
Bacteria - 24182; Metazoa - 56725; Fungi - 20130; Plants -
6559; Viruses - 758; Other Eukaryotes - 28519 (source: NCBI
BLink).		 1 0.32 -0.31
2 AT1G28060 Pre-mRNA-splicing factor 3 0.74 0.31 -0.31
3 AT3G12140 Emsy N Terminus (ENT)/ plant Tudor-like domains-containing
protein		 AtEML1, EMSY-like 1 0.71 0.32 -0.3
4 AT5G04280 RNA-binding (RRM/RBD/RNP motifs) family protein with
retrovirus zinc finger-like domain		 AtRZ-1c, RZ-1c 0.7 0.33 -0.32
5 AT3G04610 RNA-binding KH domain-containing protein flowering locus KH domain 0.69 0.32 -0.32
6 AT5G49530 SIN-like family protein 0.69 0.31 -0.32
7 AT5G56610 Phosphotyrosine protein phosphatases superfamily protein -0.69 0.32 -0.33
8 AT3G26370 O-fucosyltransferase family protein 0.68 0.3 -0.32
9 AT5G42370 Calcineurin-like metallo-phosphoesterase superfamily
protein		 -0.68 0.31 -0.31
10 AT4G09080 Outer membrane OMP85 family protein TRANSLOCON OUTER MEMBRANE COMPLEX
75-IV, translocon at the outer
envelope membrane of chloroplasts
75-IV		 0.67 0.32 -0.33
11 AT4G33650 dynamin-related protein 3A ARABIDOPSIS DYNAMIN-LIKE 2,
ABERRANT PEROXISOME MORPHOLOGY 1,
dynamin-related protein 3A		 0.66 0.31 -0.31
12 AT5G11910 alpha/beta-Hydrolases superfamily protein -0.66 0.34 -0.29
13 AT5G43440 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 0.66 0.28 -0.31
14 AT5G41260 Protein kinase protein with tetratricopeptide repeat domain 0.66 0.32 -0.31
15 AT1G80020 transposable element gene 0.66 0.33 -0.32
16 AT5G13270 Pentatricopeptide repeat (PPR) superfamily protein REQUIRED FOR ACCD RNA EDITING 1 0.65 0.32 -0.29
17 AT2G28360 SIT4 phosphatase-associated family protein 0.65 0.32 -0.34
18 AT2G33730 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.65 0.29 -0.32
19 AT3G22670 Pentatricopeptide repeat (PPR) superfamily protein 0.65 0.33 -0.31
20 AT4G39490 cytochrome P450, family 96, subfamily A, polypeptide 10 cytochrome P450, family 96,
subfamily A, polypeptide 10		 -0.64 0.34 -0.31
21 AT3G17830 Molecular chaperone Hsp40/DnaJ family protein 0.64 0.32 -0.31
22 AT3G57890 Tubulin binding cofactor C domain-containing protein 0.64 0.31 -0.32
23 AT4G18230 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Oligosaccharide biosynthesis protein Alg14 like
(InterPro:IPR013969); Has 640 Blast hits to 640 proteins in
277 species: Archae - 4; Bacteria - 281; Metazoa - 94;
Fungi - 127; Plants - 57; Viruses - 0; Other Eukaryotes -
77 (source: NCBI BLink).		 -0.64 0.32 -0.32
24 AT1G63500 Protein kinase protein with tetratricopeptide repeat domain 0.64 0.31 -0.32
25 AT5G01400 HEAT repeat-containing protein ENHANCED SILENCING PHENOTYPE 4 0.63 0.31 -0.34
26 AT1G04860 ubiquitin-specific protease 2 ATUBP2, ubiquitin-specific
protease 2		 0.63 0.31 -0.32
27 AT3G50670 U1 small nuclear ribonucleoprotein-70K U1 small nuclear
ribonucleoprotein-70K, U1SNRNP		 0.63 0.3 -0.31
28 AT2G43980 inositol 1,3,4-trisphosphate 5/6-kinase 4 inositol 1,3,4-trisphosphate
5/6-kinase 4, inositol
1,3,4-trisphosphate 5/6-kinase 4		 -0.63 0.33 -0.31
29 AT1G08130 DNA ligase 1 DNA ligase 1, DNA ligase 1 0.63 0.33 -0.32
30 AT5G06460 ubiquitin activating enzyme 2 ARABIDOPSIS THALIANA UBIQUITIN
ACTIVATING ENZYME 2, ubiquitin
activating enzyme 2		 0.62 0.31 -0.33
31 AT2G39810 ubiquitin-protein ligases HIGH EXPRESSION OF OSMOTICALLY
RESPONSIVE GENES 1		 0.62 0.35 -0.32
32 AT5G45370 nodulin MtN21 /EamA-like transporter family protein -0.62 0.32 -0.32
33 AT2G47980 sister-chromatid cohesion protein 3 SISTER-CHROMATID COHESION PROTEIN
3, sister-chromatid cohesion
protein 3		 0.62 0.32 -0.29
34 AT3G02400 SMAD/FHA domain-containing protein 0.61 0.28 -0.3
35 AT3G08620 RNA-binding KH domain-containing protein 0.61 0.32 -0.3
36 AT1G64330 myosin heavy chain-related 0.61 0.31 -0.33
37 AT5G13480 Transducin/WD40 repeat-like superfamily protein FY 0.61 0.31 -0.29
38 AT1G25375 Metallo-hydrolase/oxidoreductase superfamily protein -0.61 0.32 -0.32
39 AT1G73710 Pentatricopeptide repeat (PPR) superfamily protein 0.61 0.28 -0.29
40 AT2G34840 Coatomer epsilon subunit -0.6 0.32 -0.32
41 AT1G71830 somatic embryogenesis receptor-like kinase 1 SOMATIC EMBRYOGENESIS
RECEPTOR-LIKE KINASE 1, somatic
embryogenesis receptor-like kinase
1		 0.6 0.32 -0.33
42 AT3G44280 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 15 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G22280.1); Has 82 Blast hits to 82 proteins in 13
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.6 0.27 -0.35
43 AT2G16880 Pentatricopeptide repeat (PPR) superfamily protein 0.59 0.3 -0.3
44 AT1G06230 global transcription factor group E4 global transcription factor group
E4		 0.59 0.31 -0.33
45 AT5G28240 transposable element gene 0.59 0.28 -0.31
46 AT1G69490 NAC-like, activated by AP3/PI Arabidopsis NAC domain containing
protein 29, NAC-LIKE, ACTIVATED BY
AP3/PI, NAC-like, activated by
AP3/PI		 -0.59 0.32 -0.31
47 AT1G60200 splicing factor PWI domain-containing protein / RNA
recognition motif (RRM)-containing protein		 0.59 0.3 -0.31
48 AT1G55520 TATA binding protein 2 A. THALIANA TATA BINDING PROTEIN
2, TATA binding protein 2		 -0.58 0.33 -0.32
49 AT1G16810 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF1754, eukaryotic (InterPro:IPR013865);
Has 395 Blast hits to 394 proteins in 162 species: Archae -
0; Bacteria - 0; Metazoa - 181; Fungi - 91; Plants - 65;
Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).		 0.58 0.3 -0.31
50 AT5G28020 cysteine synthase D2 CYSTEINE SYNTHASE D2, cysteine
synthase D2		 -0.58 0.32 -0.31
51 AT4G35800 RNA polymerase II large subunit RNA polymerase II large subunit,
RNA POLYMERASE II LARGE SUBUNIT,
RNA_POL_II_LSRNA_POL_II_LS, RNA
POLYMERASE II LARGE SUBUNIT		 0.58 0.33 -0.32
52 AT3G13845 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 15 growth stages; Has 22 Blast hits to 22
proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.58 0.32 -0.32
53 AT5G13970 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G13310.1); Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 0.58 0.35 -0.33
54 AT1G32310 unknown protein; Has 28 Blast hits to 28 proteins in 9
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.58 0.32 -0.3
55 AT5G19090 Heavy metal transport/detoxification superfamily protein 0.58 0.33 -0.31
56 AT1G77230 Tetratricopeptide repeat (TPR)-like superfamily protein 0.58 0.31 -0.3
57 AT5G19200 NAD(P)-binding Rossmann-fold superfamily protein TSC10B -0.57 0.31 -0.28
58 AT5G03770 KDO transferase A AtKdtA, KDO transferase A -0.57 0.34 -0.33
59 AT5G10870 chorismate mutase 2 chorismate mutase 2, chorismate
mutase 2		 -0.56 0.33 -0.29
60 AT4G32960 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G32970.1); Has 106 Blast hits
to 106 proteins in 39 species: Archae - 0; Bacteria - 0;
Metazoa - 62; Fungi - 0; Plants - 37; Viruses - 0; Other
Eukaryotes - 7 (source: NCBI BLink).		 -0.56 0.33 -0.33
61 AT3G57320 unknown protein; Has 30 Blast hits to 30 proteins in 13
species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0;
Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.55 0.31 -0.3
62 AT3G61540 alpha/beta-Hydrolases superfamily protein -0.54 0.3 -0.34
63 AT2G35795 Chaperone DnaJ-domain superfamily protein -0.54 0.29 -0.29
64 AT4G23660 polyprenyltransferase 1 polyprenyltransferase 1,
polyprenyltransferase 1		 -0.54 0.32 -0.31
65 AT2G07230 transposable element gene -0.53 0.32 -0.3
66 AT5G56160 Sec14p-like phosphatidylinositol transfer family protein -0.53 0.33 -0.31
67 AT4G15250 B-box type zinc finger protein with CCT domain -0.53 0.31 -0.33
68 AT2G39320 Cysteine proteinases superfamily protein -0.52 0.32 -0.31
69 AT1G22140 unknown protein; Has 40 Blast hits to 40 proteins in 14
species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 0;
Plants - 28; Viruses - 0; Other Eukaryotes - 3 (source:
NCBI BLink).		 -0.51 0.3 -0.34
70 AT1G60710 NAD(P)-linked oxidoreductase superfamily protein ATB2 -0.5 0.3 -0.3
71 AT3G28400 transposable element gene -0.5 0.33 -0.32
72 AT1G63290 Aldolase-type TIM barrel family protein -0.5 0.31 -0.32
Metabolite information
Help   
  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
73 C0173 MST_2301.7 - - - 0.74 0.45 -0.44
74 C0053 ADP - ADP phosphatidylcholine biosynthesis I,
mannitol degradation II,
lipid IVA biosynthesis,
stachyose degradation,
Rubisco shunt,
copper transport II,
glycerol degradation IV,
chorismate biosynthesis,
folate polyglutamylation II,
galactose degradation III,
D-myo-inositol (1,4,5)-trisphosphate biosynthesis,
UDP-L-arabinose biosynthesis II (from L-arabinose),
cadmium transport I,
folate polyglutamylation,
coenzyme A biosynthesis,
sulfate activation for sulfonation,
1,4-dihydroxy-2-naphthoate biosynthesis II (plants),
pyrimidine deoxyribonucleotides de novo biosynthesis I,
galactose degradation II,
inosine-5'-phosphate biosynthesis II,
ribose degradation,
acetyl-CoA biosynthesis (from citrate),
inositol pyrophosphates biosynthesis,
fatty acid biosynthesis initiation I,
xylose degradation I,
adenine and adenosine salvage VI,
TCA cycle variation III (eukaryotic),
tetrahydrofolate biosynthesis II,
phosphatidylethanolamine biosynthesis II,
pyridoxal 5'-phosphate salvage pathway,
citrulline biosynthesis,
trans-zeatin biosynthesis,
glutamine biosynthesis I,
arginine biosynthesis II (acetyl cycle),
L-Ndelta-acetylornithine biosynthesis,
mevalonate pathway I,
methionine biosynthesis II,
trehalose degradation II (trehalase),
citrulline degradation,
methionine salvage pathway,
TCA cycle variation V (plant),
chlorophyllide a biosynthesis I,
starch degradation I,
methylerythritol phosphate pathway,
pyridine nucleotide cycling (plants),
ceramide degradation,
biotin-carboxyl carrier protein assembly,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
UDP-D-galacturonate biosynthesis II (from D-galacturonate),
asparagine biosynthesis III (tRNA-dependent),
superpathway of glyoxylate cycle and fatty acid degradation,
NAD/NADH phosphorylation and dephosphorylation,
1D-myo-inositol hexakisphosphate biosynthesis V (from Ins(1,3,4)P3),
galactose degradation I (Leloir pathway),
uridine-5'-phosphate biosynthesis,
lipid-dependent phytate biosynthesis II (via Ins(1,3,4)P3),
sucrose degradation III,
lysine biosynthesis VI,
sphingolipid biosynthesis (plants),
choline biosynthesis I,
GDP-glucose biosynthesis,
photorespiration,
gamma-glutamyl cycle (plant pathway),
5-aminoimidazole ribonucleotide biosynthesis I,
gamma-glutamyl cycle,
thiamine biosynthesis II,
proline biosynthesis III,
glutathione biosynthesis,
folate transformations II,
ornithine biosynthesis,
diphthamide biosynthesis,
S-methyl-5'-thioadenosine degradation I,
starch biosynthesis,
arginine biosynthesis I,
homoserine biosynthesis,
flavin biosynthesis I (bacteria and plants),
sucrose biosynthesis I,
leucine degradation I,
glycolysis I,
pyrimidine ribonucleotides interconversion,
1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza),
glycolysis IV (plant cytosol),
Calvin-Benson-Bassham cycle,
UDP-D-glucuronate biosynthesis (from myo-inositol),
guanine and guanosine salvage III,
glutamine biosynthesis III,
L-glutamine biosynthesis II (tRNA-dependent),
GDP-L-fucose biosynthesis II (from L-fucose),
nitrate reduction II (assimilatory),
ammonia assimilation cycle II,
gluconeogenesis I,
threonine biosynthesis from homoserine,
mannose degradation,
urea cycle,
lipid-dependent phytate biosynthesis I (via Ins(1,4,5)P3),
biotin biosynthesis II 		-0.64 0.44 -0.45 C0053
75 C0088 FAD - FAD cytokinins degradation,
lysine degradation II,
valine degradation I,
isoleucine degradation I,
flavin biosynthesis I (bacteria and plants) 		-0.61 0.43 -0.44 C0088
76 C0262 UDP-glucuronic acid - UDP-D-glucuronate xylan biosynthesis,
UDP-D-glucuronate biosynthesis (from myo-inositol),
UDP-D-galacturonate biosynthesis I (from UDP-D-glucuronate),
UDP-D-apiose biosynthesis (from UDP-D-glucuronate),
galactose degradation III,
UDP-D-xylose and UDP-D-glucuronate biosynthesis 		-0.6 0.46 -0.42 C0262