AT4G29390 : -
Query Information
Cytoscape Web will replace the contents of this div with your graph.
AGICode AT4G29390
Description Ribosomal protein S30 family protein
Gene information
Help   
  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G29390 Ribosomal protein S30 family protein 1 0.31 -0.32
2 AT3G05560 Ribosomal L22e protein family 0.85 0.29 -0.32
3 AT2G27530 Ribosomal protein L1p/L10e family PIGGYBACK1 0.84 0.32 -0.31
4 AT4G31985 Ribosomal protein L39 family protein 0.84 0.32 -0.32
5 AT3G49910 Translation protein SH3-like family protein 0.83 0.33 -0.31
6 AT1G51510 RNA-binding (RRM/RBD/RNP motifs) family protein Y14 0.83 0.33 -0.31
7 AT1G02780 Ribosomal protein L19e family protein embryo defective 2386 0.82 0.31 -0.33
8 AT3G49010 breast basic conserved 1 breast basic conserved 1, breast
basic conserved 1, 40S RIBOSOMAL
PROTEIN		 0.81 0.31 -0.31
9 AT4G31580 serine/arginine-rich 22 RS-containing zinc finger protein
22, RS-containing zinc finger
protein 22, RS-CONTAINING ZINC
FINGER PROTEIN 22,
serine/arginine-rich 22, SRZ22		 0.81 0.33 -0.3
10 AT4G39300 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 0.81 0.3 -0.32
11 AT3G51010 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion, plastid; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; Has 24 Blast hits to 24
proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 0.81 0.33 -0.31
12 AT2G37020 Translin family protein 0.79 0.31 -0.31
13 AT5G23900 Ribosomal protein L13e family protein 0.79 0.32 -0.34
14 AT2G33845 Nucleic acid-binding, OB-fold-like protein 0.79 0.32 -0.32
15 AT5G03300 adenosine kinase 2 adenosine kinase 2 0.79 0.33 -0.34
16 AT3G07230 wound-responsive protein-related 0.78 0.31 -0.32
17 AT4G29830 Transducin/WD40 repeat-like superfamily protein vernalization independence 3 0.78 0.33 -0.31
18 AT2G32070 Polynucleotidyl transferase, ribonuclease H-like
superfamily protein		 0.78 0.31 -0.32
19 AT1G50410 SNF2 domain-containing protein / helicase domain-containing
protein / zinc finger protein-related		 -0.78 0.31 -0.3
20 AT2G43770 Transducin/WD40 repeat-like superfamily protein 0.78 0.3 -0.31
21 AT2G46230 PIN domain-like family protein 0.78 0.31 -0.3
22 AT1G65650 Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1 UCH2 0.77 0.32 -0.33
23 AT3G10730 SAD1/UNC-84 domain protein 2 ARABIDOPSIS SAD1/UNC-84 DOMAIN
PROTEIN 2, SAD1/UNC-84 domain
protein 2		 0.77 0.32 -0.34
24 AT1G71430 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; Has 64
Blast hits to 64 proteins in 28 species: Archae - 0;
Bacteria - 0; Metazoa - 14; Fungi - 6; Plants - 42; Viruses
- 0; Other Eukaryotes - 2 (source: NCBI BLink).		 0.77 0.3 -0.32
25 AT1G27390 translocase outer membrane 20-2 translocase outer membrane 20-2 0.77 0.31 -0.3
26 AT4G35490 mitochondrial ribosomal protein L11 mitochondrial ribosomal protein
L11		 0.77 0.32 -0.33
27 AT4G04740 calcium-dependent protein kinase 23 ATCPK23, calcium-dependent protein
kinase 23		 -0.77 0.31 -0.32
28 AT5G03740 histone deacetylase 2C histone deacetylase 2C, HISTONE
DEACETYLASE 3		 0.77 0.32 -0.34
29 AT3G03160 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
intracellular protein transport; LOCATED IN: endomembrane
system, integral to membrane, endoplasmic reticulum;
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15
growth stages; CONTAINS InterPro DOMAIN/s: B-cell
receptor-associated 31-like (InterPro:IPR008417); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT5G17190.1); Has 102 Blast hits to 102 proteins in
17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 102; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.77 0.3 -0.3
30 AT5G40770 prohibitin 3 prohibitin 3, prohibitin 3 0.77 0.32 -0.34
31 AT3G43810 calmodulin 7 calmodulin 7 0.77 0.31 -0.32
32 AT2G22475 GRAM domain family protein GL2-EXPRESSION MODULATOR 0.77 0.34 -0.3
33 AT5G11010 Pre-mRNA cleavage complex II protein family 0.77 0.33 -0.29
34 AT3G22110 20S proteasome alpha subunit C1 20S proteasome alpha subunit C1 0.77 0.32 -0.32
35 AT2G42310 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G57785.1); Has 115 Blast hits
to 115 proteins in 48 species: Archae - 0; Bacteria - 0;
Metazoa - 4; Fungi - 44; Plants - 67; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.76 0.32 -0.31
36 AT3G15640 Rubredoxin-like superfamily protein 0.76 0.3 -0.29
37 AT1G35620 PDI-like 5-2 ARABIDOPSIS THALIANA PROTEIN
DISULFIDE ISOMERASE 8, PDI-like
5-2, PROTEIN DISULFIDE ISOMERASE
8, PDI-like 5-2		 0.76 0.31 -0.29
38 AT4G26210 Mitochondrial ATP synthase subunit G protein 0.76 0.32 -0.32
39 AT3G43720 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 0.76 0.31 -0.33
40 AT1G26630 Eukaryotic translation initiation factor 5A-1 (eIF-5A 1)
protein		 EUKARYOTIC ELONGATION FACTOR 5A-2,
EUKARYOTIC ELONGATION FACTOR 5A-2,
FUMONISIN B1-RESISTANT12		 0.76 0.32 -0.32
41 AT2G30050 transducin family protein / WD-40 repeat family protein 0.75 0.29 -0.3
42 AT5G11340 Acyl-CoA N-acyltransferases (NAT) superfamily protein 0.75 0.32 -0.33
43 AT2G03870 Small nuclear ribonucleoprotein family protein EMBRYO DEFECTIVE 2816 0.75 0.31 -0.29
44 AT5G58230 Transducin/WD40 repeat-like superfamily protein ARABIDOPSIS MULTICOPY SUPRESSOR OF
IRA1, MATERNAL EFFECT EMBRYO
ARREST 70, MULTICOPY SUPRESSOR OF
IRA1		 0.75 0.3 -0.32
45 AT3G10090 Nucleic acid-binding, OB-fold-like protein 0.75 0.3 -0.34
46 AT3G19760 eukaryotic initiation factor 4A-III eukaryotic initiation factor
4A-III		 0.75 0.32 -0.3
47 AT5G57370 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF1777 (InterPro:IPR013957); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.75 0.33 -0.31
48 AT5G07960 unknown protein; CONTAINS InterPro DOMAIN/s:
Uncharacterised protein family UPF0139
(InterPro:IPR005351); Has 193 Blast hits to 193 proteins in
75 species: Archae - 0; Bacteria - 0; Metazoa - 130; Fungi
- 0; Plants - 52; Viruses - 0; Other Eukaryotes - 11
(source: NCBI BLink).		 0.75 0.31 -0.32
49 AT4G31130 Protein of unknown function (DUF1218) 0.75 0.32 -0.29
50 AT3G04920 Ribosomal protein S24e family protein 0.74 0.31 -0.31
51 AT4G00170 Plant VAMP (vesicle-associated membrane protein) family
protein		 0.74 0.31 -0.31
52 AT5G24840 tRNA (guanine-N-7) methyltransferase 0.74 0.33 -0.33
53 AT2G21160 Translocon-associated protein (TRAP), alpha subunit 0.74 0.31 -0.31
54 AT1G22450 cytochrome C oxidase 6B CYTOCHROME C OXIDASE 6B2,
cytochrome C oxidase 6B		 0.74 0.33 -0.33
55 AT1G02310 Glycosyl hydrolase superfamily protein endo-beta-mannanase 1 -0.74 0.29 -0.31
56 AT3G28200 Peroxidase superfamily protein 0.74 0.33 -0.29
57 AT1G13870 calmodulin binding;purine nucleotide binding AtKTI12, DEFORMED ROOTS AND LEAVES
1		 0.74 0.31 -0.29
58 AT1G03150 Acyl-CoA N-acyltransferases (NAT) superfamily protein 0.74 0.3 -0.29
59 AT3G07170 Sterile alpha motif (SAM) domain-containing protein 0.74 0.33 -0.3
60 AT5G08040 mitochondrial import receptor subunit TOM5 homolog mitochondrial import receptor
subunit TOM5 homolog		 0.74 0.31 -0.31
61 AT3G12180 Cornichon family protein 0.74 0.32 -0.33
62 AT1G21430 Flavin-binding monooxygenase family protein YUC11 -0.71 0.3 -0.3
63 AT5G62800 Protein with RING/U-box and TRAF-like domains -0.7 0.33 -0.33
64 AT1G67310 Calmodulin-binding transcription activator protein with
CG-1 and Ankyrin domains		 -0.7 0.32 -0.3
65 AT3G08020 PHD finger family protein -0.7 0.31 -0.31
66 AT2G36670 Eukaryotic aspartyl protease family protein -0.69 0.3 -0.33
67 AT5G10880 tRNA synthetase-related / tRNA ligase-related -0.69 0.31 -0.32
68 AT4G00800 transducin family protein / WD-40 repeat family protein SETH5 -0.69 0.31 -0.33
69 AT3G01320 SIN3-like 1 SIN3-like 1 -0.68 0.31 -0.32
70 AT1G57943 purine permease 17 purine permease 17, purine
permease 17		 -0.68 0.33 -0.29
71 AT4G23980 auxin response factor 9 auxin response factor 9 -0.68 0.31 -0.32
72 ATCG00560 photosystem II reaction center protein L photosystem II reaction center
protein L		 -0.67 0.31 -0.3
73 AT1G72650 TRF-like 6 TRF-like 6 -0.67 0.31 -0.32
74 AT1G68710 ATPase E1-E2 type family protein / haloacid
dehalogenase-like hydrolase family protein		 -0.67 0.3 -0.32
75 AT5G26190 Cysteine/Histidine-rich C1 domain family protein -0.67 0.32 -0.31
76 AT2G27900 CONTAINS InterPro DOMAIN/s: Protein of unknown function
DUF2451, C-terminal (InterPro:IPR019514), Vacuolar protein
sorting-associated protein 54 (InterPro:IPR019515); Has 316
Blast hits to 252 proteins in 92 species: Archae - 0;
Bacteria - 2; Metazoa - 200; Fungi - 2; Plants - 68;
Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).		 -0.67 0.32 -0.3
77 AT4G19040 ENHANCED DISEASE RESISTANCE 2 ENHANCED DISEASE RESISTANCE 2 -0.66 0.31 -0.32
78 AT2G17110 Protein of unknown function (DUF630 and DUF632) -0.66 0.31 -0.32
79 AT1G09510 NAD(P)-binding Rossmann-fold superfamily protein -0.66 0.3 -0.32
80 AT3G57530 calcium-dependent protein kinase 32 ATCPK32, CDPK32, calcium-dependent
protein kinase 32		 -0.65 0.32 -0.31
81 AT1G24330 ARM repeat superfamily protein -0.65 0.33 -0.3
82 AT1G45160 Protein kinase superfamily protein -0.65 0.32 -0.32
83 AT5G42600 marneral synthase marneral synthase -0.65 0.31 -0.3
84 AT3G28890 receptor like protein 43 receptor like protein 43, receptor
like protein 43		 -0.65 0.31 -0.31
85 AT5G07890 myosin heavy chain-related -0.65 0.3 -0.31
86 AT3G27670 ARM repeat superfamily protein RESURRECTION1 -0.64 0.33 -0.33
87 AT1G33813 transposable element gene -0.64 0.29 -0.29
88 AT1G51340 MATE efflux family protein -0.63 0.33 -0.31
89 AT5G13690 alpha-N-acetylglucosaminidase family / NAGLU family CYCLOPS 1,
N-ACETYL-GLUCOSAMINIDASE		 -0.63 0.35 -0.3
90 AT4G01280 Homeodomain-like superfamily protein -0.63 0.33 -0.31
91 AT4G36980 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Splicing factor, suppressor of white
apricot (InterPro:IPR019147); Has 7672 Blast hits to 5479
proteins in 321 species: Archae - 0; Bacteria - 89; Metazoa
- 5155; Fungi - 712; Plants - 341; Viruses - 39; Other
Eukaryotes - 1336 (source: NCBI BLink).		 -0.63 0.32 -0.31
92 AT2G23860 pseudogene, similar to VAP27, blastp match of 56% identity
and 1.3e-25 P-value to GP|6688926|emb|CAB65313.1||AJ251365
VAP27 {Nicotiana plumbaginifolia}		 -0.63 0.33 -0.32
93 AT3G03240 alpha/beta-Hydrolases superfamily protein -0.63 0.32 -0.31
94 AT3G42460 transposable element gene -0.62 0.29 -0.31
95 AT3G53090 ubiquitin-protein ligase 7 ubiquitin-protein ligase 7 -0.62 0.32 -0.31
96 AT1G63560 Receptor-like protein kinase-related family protein -0.62 0.31 -0.32
97 AT3G17980 Calcium-dependent lipid-binding (CaLB domain) family
protein		 Arabidopsis thaliana C2 domain, C2
domain		 -0.62 0.31 -0.32
98 AT5G05220 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.62 0.31 -0.3
99 AT2G22310 ubiquitin-specific protease 4 ubiquitin-specific protease 4,
ubiquitin-specific protease 4		 -0.62 0.31 -0.33
100 AT2G14390 unknown protein; Has 294 Blast hits to 290 proteins in 73
species: Archae - 2; Bacteria - 20; Metazoa - 212; Fungi -
5; Plants - 4; Viruses - 0; Other Eukaryotes - 51 (source:
NCBI BLink).		 -0.62 0.31 -0.33
101 AT5G12460 Protein of unknown function (DUF604) -0.61 0.32 -0.34
102 AT2G19550 alpha/beta-Hydrolases superfamily protein -0.61 0.33 -0.31
103 AT5G54350 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast; BEST
Arabidopsis thaliana protein match is: C2H2-like zinc
finger protein (TAIR:AT5G54360.1); Has 1807 Blast hits to
1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 -0.61 0.33 -0.31
104 AT4G08670 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.61 0.32 -0.29
105 AT4G18990 xyloglucan endotransglucosylase/hydrolase 29 xyloglucan
endotransglucosylase/hydrolase 29		 -0.61 0.32 -0.32
Metabolite information
Help   
  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
106 C0217 Putative glucosinole - - - 0.86 0.46 -0.42
107 C0109 Guanine - Guanine guanine and guanosine salvage II,
guanosine nucleotides degradation II 		-0.81 0.46 -0.45 C0109
108 C0225 Raffinose D-(+)-Raffinose Raffinose ajugose biosynthesis II (galactinol-independent),
stachyose biosynthesis,
stachyose degradation 		-0.77 0.44 -0.42 C0225
109 C0056 AMP - AMP PRPP biosynthesis I,
fatty acid biosynthesis (plant mitochondria),
adenine and adenosine salvage VI,
biotin-carboxyl carrier protein assembly,
molybdenum cofactor biosynthesis II (eukaryotes),
gluconeogenesis I,
adenine and adenosine salvage II,
asparagine biosynthesis I,
L-glutamine biosynthesis II (tRNA-dependent),
trans-cinnamoyl-CoA biosynthesis,
IAA degradation V,
ethanol degradation II (cytosol),
arginine biosynthesis I,
IAA degradation IV,
fatty acid activation,
selenate reduction,
IAA biosynthesis VII,
4-hydroxybenzoate biosynthesis V,
tetrapyrrole biosynthesis I,
flavonoid biosynthesis,
indole-3-acetyl-amino acid biosynthesis,
glutamine biosynthesis III,
ethanol degradation IV (peroxisomal),
glycolysis I,
asparagine biosynthesis III (tRNA-dependent),
jasmonoyl-amino acid conjugates biosynthesis I,
molybdenum cofactor biosynthesis,
pyridine nucleotide cycling (plants),
scopoletin biosynthesis,
jasmonic acid biosynthesis,
adenosine nucleotides degradation I,
fatty acid beta-oxidation II (core pathway),
simple coumarins biosynthesis,
sulfate reduction II (assimilatory),
pantothenate biosynthesis,
sporopollenin precursor biosynthesis,
urea cycle,
thiamine biosynthesis II,
starch degradation II,
NAD biosynthesis I (from aspartate),
citrulline-nitric oxide cycle,
beta-alanine biosynthesis II,
arginine biosynthesis II (acetyl cycle),
suberin biosynthesis,
linoleate biosynthesis I (plants),
trans-zeatin biosynthesis,
tetrahydrofolate biosynthesis II,
purine nucleotides de novo biosynthesis II,
phenylpropanoid biosynthesis,
6-hydroxymethyl-dihydropterin diphosphate biosynthesis I,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
tRNA charging 		-0.74 0.49 -0.44 C0056
110 C0107 Glycine - Glycine 5-aminoimidazole ribonucleotide biosynthesis I,
gamma-glutamyl cycle,
folate polyglutamylation,
gamma-glutamyl cycle (plant pathway),
glutathione biosynthesis,
glutathione-mediated detoxification II,
folate transformations II,
indole glucosinolate breakdown (active in intact plant cell),
glycine cleavage complex,
camalexin biosynthesis,
thiamine biosynthesis II,
tRNA charging,
glycine biosynthesis,
glutathione degradation,
photorespiration 		-0.73 0.43 -0.46 C0107
111 C0032 3-Phosphoglyceric acid 3-Phospho-(R)-glyceric acid 3-Phosphoglycerate glycolysis I,
gluconeogenesis I,
Calvin-Benson-Bassham cycle,
sucrose biosynthesis I,
serine biosynthesis,
photorespiration,
Rubisco shunt,
glycolysis IV (plant cytosol) 		-0.69 0.45 -0.46 C0032
112 C0099 Glucose-1-phosphate α,β-D-Glucose-1-phosphate α-D-Glucose-1-phosphate; β-D-Glucose-1-phosphate galactose degradation I (Leloir pathway) -0.68 0.43 -0.47 C0099
113 C0142 Malonic acid - Malonate fatty acid biosynthesis (plant mitochondria) -0.61 0.3 -0.31 C0142