AT4G11840 : phospholipase D gamma 3
Query Information
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AGICode AT4G11840
Description phospholipase D gamma 3
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G11840 phospholipase D gamma 3 phospholipase D gamma 3 1 0.31 -0.33
2 AT3G47630 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; EXPRESSED IN: 21 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Mitochondrial matrix Mmp37 (InterPro:IPR015222); Has 325
Blast hits to 325 proteins in 172 species: Archae - 0;
Bacteria - 0; Metazoa - 109; Fungi - 140; Plants - 43;
Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).		 -0.68 0.33 -0.32
3 AT2G06150 transposable element gene 0.66 0.31 -0.32
4 AT2G20150 unknown protein; Has 5 Blast hits to 5 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.66 0.3 -0.3
5 AT5G57530 xyloglucan endotransglucosylase/hydrolase 12 AtXTH12, xyloglucan
endotransglucosylase/hydrolase 12		 -0.66 0.31 -0.33
6 AT4G02490 transposable element gene -0.64 0.31 -0.29
7 AT4G29260 HAD superfamily, subfamily IIIB acid phosphatase -0.63 0.33 -0.3
8 AT2G01770 vacuolar iron transporter 1 ATVIT1, vacuolar iron transporter
1		 0.63 0.33 -0.31
9 AT1G35513 pseudogene of isochorismate synthase-related /
isochorismate mutase-related		 0.63 0.3 -0.35
10 AT2G30380 Plant protein of unknown function (DUF641) 0.62 0.28 -0.33
11 AT2G19300 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; Has 4 Blast hits to 4 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.62 0.32 -0.3
12 AT4G00960 Protein kinase superfamily protein 0.62 0.32 -0.31
13 AT5G24400 NagB/RpiA/CoA transferase-like superfamily protein EMBRYO DEFECTIVE 2024,
6-PHOSPHOGLUCONOLACTONASE 3		 -0.62 0.32 -0.33
14 AT5G01030 Protein of unknown function (DUF3527) 0.61 0.3 -0.31
15 AT5G43830 Aluminium induced protein with YGL and LRDR motifs -0.61 0.32 -0.32
16 AT1G12230 Aldolase superfamily protein -0.61 0.32 -0.33
17 AT1G01660 RING/U-box superfamily protein -0.61 0.32 -0.32
18 AT5G45500 RNI-like superfamily protein 0.6 0.33 -0.31
19 AT3G42640 H(+)-ATPase 8 H(+)-ATPase 8, H(+)-ATPase 8 0.6 0.34 -0.32
20 AT1G48640 Transmembrane amino acid transporter family protein -0.6 0.33 -0.32
21 AT3G43840 3-oxo-5-alpha-steroid 4-dehydrogenase family protein 0.6 0.32 -0.35
22 AT2G14420 transposable element gene 0.6 0.31 -0.31
23 AT5G05670 signal recognition particle binding -0.6 0.32 -0.32
24 AT1G35860 translocon outer membrane complex 75-I translocon outer membrane complex
75-I		 0.59 0.33 -0.29
25 AT3G18100 myb domain protein 4r1 myb domain protein 4R1, myb domain
protein 4r1		 0.59 0.3 -0.31
26 AT4G24170 ATP binding microtubule motor family protein 0.59 0.31 -0.32
27 AT4G15660 Thioredoxin superfamily protein -0.59 0.3 -0.32
28 AT3G14570 glucan synthase-like 4 glucan synthase-like 4, atgsl4,
gsl04, glucan synthase-like 4		 0.59 0.3 -0.31
29 AT5G19790 related to AP2 11 related to AP2 11 -0.58 0.33 -0.33
30 AT3G11200 alfin-like 2 alfin-like 2 -0.58 0.32 -0.32
31 AT2G14170 aldehyde dehydrogenase 6B2 aldehyde dehydrogenase 6B2 -0.58 0.33 -0.33
32 AT5G61740 ABC2 homolog 14 ATP-binding cassette A10,
ARABIDOPSIS THALIANA ABC2 HOMOLOG
14, ABC2 homolog 14		 0.58 0.32 -0.3
33 AT5G63620 GroES-like zinc-binding alcohol dehydrogenase family
protein		 -0.58 0.33 -0.31
34 AT4G17245 RING/U-box superfamily protein -0.57 0.28 -0.32
35 AT1G50040 Protein of unknown function (DUF1005) -0.57 0.31 -0.31
36 AT4G21326 subtilase 3.12 subtilase 3.12, subtilase 3.12 0.57 0.32 -0.3
37 AT2G43760 molybdopterin biosynthesis MoaE family protein -0.57 0.3 -0.31
38 AT5G04520 Protein of unknown function DUF455 -0.57 0.33 -0.31
39 AT4G12530 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.57 0.3 -0.32
40 AT4G00955 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; EXPRESSED IN: 14 plant structures; EXPRESSED
DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s:
EGF-like (InterPro:IPR006210); BEST Arabidopsis thaliana
protein match is: Protein kinase superfamily protein
(TAIR:AT2G23450.1); Has 94 Blast hits to 88 proteins in 13
species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 0;
Plants - 84; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.57 0.32 -0.32
41 AT5G07740 actin binding 0.57 0.32 -0.31
42 AT2G48060 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: shoot, sperm cell;
CONTAINS InterPro DOMAIN/s: Protein of unknown function
DUF3595 (InterPro:IPR021999); Has 533 Blast hits to 341
proteins in 95 species: Archae - 2; Bacteria - 15; Metazoa
- 318; Fungi - 0; Plants - 93; Viruses - 0; Other
Eukaryotes - 105 (source: NCBI BLink).		 0.56 0.32 -0.31
43 AT5G11400 Protein kinase superfamily protein 0.56 0.31 -0.32
44 AT5G58550 ETO1-like 2 ETO1-like 2 0.56 0.32 -0.28
45 AT1G77830 RING/U-box superfamily protein 0.56 0.3 -0.3
46 AT2G17650 AMP-dependent synthetase and ligase family protein 0.56 0.3 -0.32
47 AT2G17880 Chaperone DnaJ-domain superfamily protein -0.56 0.29 -0.31
48 AT1G14570 UBX domain-containing protein -0.55 0.33 -0.35
49 AT2G05020 transposable element gene 0.55 0.3 -0.34
50 AT4G35900 Basic-leucine zipper (bZIP) transcription factor family
protein		 atbzip14, FD, FD-1 0.55 0.31 -0.31
51 AT5G27020 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.55 0.3 -0.32
52 AT3G30510 transposable element gene -0.55 0.3 -0.31
53 AT5G32590 myosin heavy chain-related -0.55 0.31 -0.34
54 AT3G47800 Galactose mutarotase-like superfamily protein -0.54 0.31 -0.32
55 AT5G46140 Protein of unknown function (DUF295) 0.54 0.31 -0.29
56 AT5G46470 disease resistance protein (TIR-NBS-LRR class) family RESISTANT TO P. SYRINGAE 6 0.54 0.34 -0.34
57 AT3G61160 Protein kinase superfamily protein 0.54 0.31 -0.29
58 AT4G28720 Flavin-binding monooxygenase family protein YUCCA 8 -0.54 0.32 -0.31
59 AT5G14870 cyclic nucleotide-gated channel 18 CYCLIC NUCLEOTIDE-GATED CHANNEL
18, cyclic nucleotide-gated
channel 18		 0.54 0.3 -0.29
60 AT2G06110 transposable element gene 0.54 0.29 -0.3
61 AT1G44060 transposable element gene -0.54 0.34 -0.33
62 AT5G21170 5'-AMP-activated protein kinase beta-2 subunit protein AKINBETA1 -0.54 0.3 -0.32
63 AT5G43480 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.54 0.31 -0.3
64 AT2G04070 MATE efflux family protein 0.54 0.31 -0.34
65 AT5G18220 O-Glycosyl hydrolases family 17 protein -0.54 0.32 -0.31
66 AT5G22875 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to
17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink).		 0.54 0.3 -0.32
67 AT4G39650 gamma-glutamyl transpeptidase 2 gamma-glutamyl transpeptidase 2 0.53 0.32 -0.32
68 AT2G30480 unknown protein; Has 35333 Blast hits to 34131 proteins in
2444 species: Archae - 798; Bacteria - 22429; Metazoa -
974; Fungi - 991; Plants - 531; Viruses - 0; Other
Eukaryotes - 9610 (source: NCBI BLink).		 0.53 0.31 -0.32
69 AT3G14020 nuclear factor Y, subunit A6 nuclear factor Y, subunit A6 0.53 0.32 -0.3
70 AT5G63910 farnesylcysteine lyase farnesylcysteine lyase -0.53 0.32 -0.32
71 AT1G12560 expansin A7 ATEXP7, expansin A7, ATHEXP ALPHA
1.26, EXP7, expansin A7		 -0.53 0.31 -0.31
72 AT2G29620 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G07330.1); Has 887 Blast hits
to 750 proteins in 151 species: Archae - 2; Bacteria - 63;
Metazoa - 270; Fungi - 51; Plants - 111; Viruses - 6; Other
Eukaryotes - 384 (source: NCBI BLink).		 -0.53 0.31 -0.33
73 AT1G53350 Disease resistance protein (CC-NBS-LRR class) family -0.53 0.29 -0.32
74 AT4G25200 mitochondrion-localized small heat shock protein 23.6 mitochondrion-localized small heat
shock protein 23.6,
mitochondrion-localized small heat
shock protein 23.6		 0.53 0.3 -0.32
75 AT2G16360 Ribosomal protein S25 family protein -0.52 0.32 -0.31
76 AT1G33220 Glycosyl hydrolase superfamily protein -0.52 0.32 -0.31
77 AT4G04490 cysteine-rich RLK (RECEPTOR-like protein kinase) 36 cysteine-rich RLK (RECEPTOR-like
protein kinase) 36		 0.52 0.31 -0.34
78 AT2G33690 Late embryogenesis abundant protein, group 6 0.52 0.3 -0.31
79 AT5G20450 CONTAINS InterPro DOMAIN/s: Dilute (InterPro:IPR002710);
BEST Arabidopsis thaliana protein match is: Myosin family
protein with Dil domain (TAIR:AT5G20490.2); Has 1723 Blast
hits to 1458 proteins in 355 species: Archae - 28; Bacteria
- 353; Metazoa - 453; Fungi - 121; Plants - 353; Viruses -
3; Other Eukaryotes - 412 (source: NCBI BLink).		 0.52 0.3 -0.31
80 AT5G57070 hydroxyproline-rich glycoprotein family protein 0.52 0.3 -0.29
81 AT1G48290 transposable element gene 0.52 0.32 -0.33
82 AT1G73840 hydroxyproline-rich glycoprotein family protein ENHANCED SILENCING PHENOTYPE 1 -0.52 0.34 -0.31
83 AT1G01480 1-amino-cyclopropane-1-carboxylate synthase 2 1-amino-cyclopropane-1-carboxylate
synthase 2, AT-ACC2		 0.52 0.31 -0.3
84 AT2G45230 transposable element gene 0.52 0.31 -0.3
85 AT4G08410 Proline-rich extensin-like family protein -0.52 0.32 -0.32
86 AT4G36700 RmlC-like cupins superfamily protein -0.52 0.31 -0.33
87 AT5G15250 FTSH protease 6 ATFTSH6, FTSH protease 6 0.51 0.31 -0.32
88 AT3G32160 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G43150.1); Has 28 Blast hits
to 28 proteins in 2 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.51 0.3 -0.32
89 AT4G19680 iron regulated transporter 2 IRON REGULATED TRANSPORTER 2, iron
regulated transporter 2		 -0.51 0.29 -0.3
90 AT5G20930 Protein kinase superfamily protein TOUSLED 0.51 0.31 -0.31
91 AT2G26810 Putative methyltransferase family protein -0.51 0.32 -0.32
92 AT5G58460 cation/H+ exchanger 25 ARABIDOPSIS THALIANA CATION/H+
EXCHANGER 25, cation/H+ exchanger
25		 0.51 0.3 -0.32
93 AT3G22640 cupin family protein PAP85 -0.51 0.32 -0.31
94 AT5G36270 pseudogene of dehydroascorbate reductase -0.5 0.29 -0.33
95 AT4G11090 TRICHOME BIREFRINGENCE-LIKE 23 TRICHOME BIREFRINGENCE-LIKE 23 -0.5 0.32 -0.34
96 AT1G70000 myb-like transcription factor family protein 0.5 0.3 -0.29
97 AT2G02550 PIN domain-like family protein 0.5 0.31 -0.33
98 AT4G16840 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G35658.3); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.5 0.31 -0.32
99 AT5G04890 HSP20-like chaperones superfamily protein RESTRICTED TEV MOVEMENT 2 0.5 0.28 -0.32
100 AT5G45420 Duplicated homeodomain-like superfamily protein membrane anchored MYB -0.5 0.3 -0.31
101 AT3G50500 SNF1-related protein kinase 2.2 SNF1-RELATED PROTEIN KINASE 2-2,
SNF1-related protein kinase 2.2,
SNF1-RELATED PROTEIN KINASE 2-2,
SRK2D		 -0.5 0.3 -0.31
102 AT1G01360 regulatory component of ABA receptor 1 PYRABACTIN RESISTANCE 1-LIKE 9,
regulatory component of ABA
receptor 1		 -0.5 0.32 -0.29
103 AT1G76140 Prolyl oligopeptidase family protein -0.5 0.32 -0.33
104 AT4G32730 Homeodomain-like protein ATMYB3R-1, ARABIDOOSIS THALIANA
MYB DOMAIN PROTEIN 3R1, MYB DOMAIN
PROTEIN 3R1, C-MYB-LIKE
TRANSCRIPTION FACTOR 3R-1, PC-MYB1		 0.49 0.32 -0.3
105 AT3G44900 cation/H+ exchanger 4 cation/H+ exchanger 4, cation/H+
exchanger 4		 0.49 0.32 -0.3
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
106 C0186 NAD - NAD+ ammonia assimilation cycle II,
aspartate degradation II,
adenosine nucleotides degradation I,
plant sterol biosynthesis II,
UDP-D-xylose and UDP-D-glucuronate biosynthesis,
NAD biosynthesis I (from aspartate),
ethanol degradation IV (peroxisomal),
abscisic acid biosynthesis,
palmitate biosynthesis II (bacteria and plants),
zeaxanthin biosynthesis,
sucrose degradation to ethanol and lactate (anaerobic),
glutamate degradation IV,
stearate biosynthesis II (plants),
guanosine nucleotides degradation II,
glutamate degradation I,
mannitol degradation II,
glycerol-3-phosphate shuttle,
2-ketoglutarate dehydrogenase complex,
arginine degradation I (arginase pathway),
aerobic respiration (alternative oxidase pathway),
branched-chain alpha-keto acid dehydrogenase complex,
4-aminobutyrate degradation IV,
glycolysis I,
glycine cleavage complex,
lysine degradation II,
fatty acid beta-oxidation II (core pathway),
nitrate reduction II (assimilatory),
TCA cycle variation V (plant),
leucine degradation I,
thiamine biosynthesis II,
acetaldehyde biosynthesis I,
sorbitol degradation I,
glutamine biosynthesis III,
aerobic respiration (cytochrome c),
ethanol degradation I,
ascorbate biosynthesis I (L-galactose pathway),
glycolysis IV (plant cytosol),
benzoate biosynthesis II (CoA-independent, non-beta-oxidative),
siroheme biosynthesis,
TCA cycle variation III (eukaryotic),
isoleucine degradation I,
pyridine nucleotide cycling (plants),
tyrosine biosynthesis I,
gluconeogenesis I,
glycine betaine biosynthesis III (plants),
traumatin and (Z)-3-hexen-1-yl acetate biosynthesis,
NAD/NADH phosphorylation and dephosphorylation,
guanosine nucleotides degradation I,
purine nucleotides de novo biosynthesis II,
acetyl-CoA biosynthesis (from pyruvate),
serine biosynthesis,
photorespiration,
histidine biosynthesis,
glyoxylate cycle,
jasmonic acid biosynthesis,
alanine degradation II (to D-lactate),
a ubiquinone + NADH + H+ -> a ubiquinol + NAD+,
putrescine degradation IV,
brassinosteroid biosynthesis III,
fatty acid elongation -- saturated,
pyruvate fermentation to ethanol II,
beta-alanine biosynthesis II,
4-hydroxybenzoate biosynthesis V,
plant sterol biosynthesis,
urate biosynthesis/inosine 5'-phosphate degradation,
phenylalanine degradation III,
glutamate biosynthesis IV,
leucine biosynthesis,
fatty acid alpha-oxidation,
a ubiquinone + NADH + H+ -> NAD+ + a ubiquinol,
Fe(III)-reduction and Fe(II) transport,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
phenylethanol biosynthesis,
pyruvate fermentation to lactate,
superpathway of glyoxylate cycle and fatty acid degradation,
fatty acid omega-oxidation,
galactose degradation III,
ethanol degradation II (cytosol),
sucrose biosynthesis I,
valine degradation I,
folate transformations II 		-0.66 0.44 -0.48 C0186
107 C0261 UDP-glucose - UDP-D-glucose quercetin glucoside biosynthesis (Arabidopsis),
abscisic acid glucose ester biosynthesis,
anthocyanin biosynthesis (delphinidin 3-O-glucoside),
UDP-glucose biosynthesis (from sucrose),
2,4,6-trinitrotoluene degradation,
galactose degradation I (Leloir pathway),
cytokinins-O-glucoside biosynthesis,
trehalose biosynthesis I,
dolichyl-diphosphooligosaccharide biosynthesis,
phenolic malonylglucosides biosynthesis,
callose biosynthesis,
superpathway of anthocyanin biosynthesis (from cyanidin and cyanidin 3-O-glucoside),
glucosinolate biosynthesis from hexahomomethionine,
coniferin metabolism,
glucosinolate biosynthesis from phenylalanine,
xyloglucan biosynthesis,
glucosinolate biosynthesis from pentahomomethionine,
anthocyanin biosynthesis (pelargonidin 3-O-glucoside, cyanidin 3-O-glucoside),
glucosinolate biosynthesis from dihomomethionine,
cellulose biosynthesis,
sinapate ester biosynthesis,
superpathway of IAA conjugate biosynthesis,
salicylate glucosides biosynthesis IV,
sucrose biosynthesis I,
glucosinolate biosynthesis from trihomomethionine,
tetrahydrofolate biosynthesis II,
sucrose degradation III,
UDP-D-xylose and UDP-D-glucuronate biosynthesis,
coumarin biosynthesis (via 2-coumarate),
superpathway of sucrose and starch metabolism I (non-photosynthetic tissue),
monolignol glucosides biosynthesis,
glucosinolate biosynthesis from homomethionine,
kaempferol glucoside biosynthesis (Arabidopsis),
salicylate glucosides biosynthesis III,
cytokinins 7-N-glucoside biosynthesis,
galactose degradation III,
cytokinins 9-N-glucoside biosynthesis,
glucosinolate biosynthesis from tryptophan,
UDP-galactose biosynthesis,
salicylate glucosides biosynthesis II,
stachyose degradation,
superpathway of sucrose and starch metabolism II (photosynthetic tissue),
UDP-glucose biosynthesis (from glucose 6-phosphate),
sphingolipid biosynthesis (plants),
glucosinolate biosynthesis from tetrahomomethionine,
galactose degradation II,
UDP-L-rhamnose biosynthesis 		-0.65 0.46 -0.41 C0261
108 C0088 FAD - FAD cytokinins degradation,
lysine degradation II,
valine degradation I,
isoleucine degradation I,
flavin biosynthesis I (bacteria and plants) 		-0.64 0.45 -0.44 C0088
109 C0073 Cysteine L-Cysteine L-Cysteine alanine biosynthesis III,
cysteine biosynthesis I,
gamma-glutamyl cycle (plant pathway),
farnesylcysteine salvage pathway,
molybdenum cofactor biosynthesis,
thiamine biosynthesis II,
cyanide detoxification II,
indole glucosinolate breakdown (insect chewing induced),
glutathione degradation,
glutathione biosynthesis,
molybdenum cofactor biosynthesis II (eukaryotes),
cyanide degradation,
homocysteine and cysteine interconversion,
methionine biosynthesis II,
tRNA charging,
gamma-glutamyl cycle,
coenzyme A biosynthesis 		-0.63 0.44 -0.42 C0073
110 C0116 Hydroxylamine - Hydroxylamine - 0.6 0.46 -0.46 C0116
111 C0062 Betain - - - -0.5 0.3 -0.33