AT4G09480 : -
Query Information
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AGICode AT4G09480
Description transposable element gene
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G09480 transposable element gene 1 0.35 -0.32
2 AT3G42240 transposable element gene 0.65 0.3 -0.33
3 AT1G21220 transposable element gene 0.64 0.31 -0.31
4 AT5G36650 transposable element gene 0.64 0.32 -0.33
5 AT2G10070 transposable element gene -0.63 0.3 -0.31
6 AT1G75930 extracellular lipase 6 extracellular lipase 6 0.63 0.32 -0.34
7 AT5G51320 transposable element gene 0.62 0.31 -0.3
8 AT5G06570 alpha/beta-Hydrolases superfamily protein -0.62 0.31 -0.34
9 AT5G37160 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.62 0.29 -0.32
10 AT3G29380 Cyclin-like family protein plant-specific TFIIB-related
protein 2		 0.61 0.32 -0.32
11 AT2G20770 GCR2-like 2 GCR2-like 2 0.61 0.33 -0.33
12 AT1G61940 tubby like protein 4 tubby like protein 4, tubby like
protein 4		 -0.61 0.3 -0.3
13 AT2G22850 basic leucine-zipper 6 basic leucine-zipper 6, basic
leucine-zipper 6		 -0.6 0.3 -0.31
14 AT1G71450 Integrase-type DNA-binding superfamily protein -0.6 0.32 -0.33
15 AT3G44140 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: sperm cell, male
gametophyte, pollen tube; EXPRESSED DURING: M germinated
pollen stage; Has 1 Blast hits to 1 proteins in 1 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants -
1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).		 -0.6 0.32 -0.3
16 AT1G11340 S-locus lectin protein kinase family protein -0.6 0.33 -0.33
17 AT3G10540 3-phosphoinositide-dependent protein kinase -0.6 0.3 -0.32
18 AT3G56270 Plant protein of unknown function (DUF827) 0.59 0.34 -0.31
19 AT4G25220 root hair specific 15 glycerol-3-phosphate permease 2,
glycerol-3-phosphate permease 2,
root hair specific 15		 -0.59 0.3 -0.32
20 AT4G24840 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
protein transport, Golgi organization; LOCATED IN: vacuole;
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: COG complex
component, COG2 (InterPro:IPR009316); Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink).		 -0.59 0.33 -0.32
21 AT5G08080 syntaxin of plants 132 ATSYP132, syntaxin of plants 132 -0.59 0.33 -0.3
22 AT3G53820 C2H2 and C2HC zinc fingers superfamily protein -0.59 0.31 -0.31
23 AT5G51520 Plant invertase/pectin methylesterase inhibitor superfamily
protein		 -0.59 0.31 -0.3
24 AT3G18770 Autophagy-related protein 13 -0.58 0.33 -0.31
25 AT5G16300 Vps51/Vps67 family (components of vesicular transport)
protein		 -0.58 0.32 -0.29
26 AT3G59530 Calcium-dependent phosphotriesterase superfamily protein LESS ADHERENT POLLEN 3 0.58 0.3 -0.32
27 AT5G23020 2-isopropylmalate synthase 2 2-isopropylmalate synthase 2,
METHYLTHIOALKYMALATE
SYNTHASE-LIKE, MAM3		 -0.58 0.3 -0.32
28 AT1G48180 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G51670.1); Has 39 Blast hits
to 39 proteins in 2 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.58 0.32 -0.32
29 AT1G66030 cytochrome P450, family 96, subfamily A, polypeptide 14
pseudogene		 cytochrome P450, family 96,
subfamily A, polypeptide 14
pseudogene		 -0.57 0.31 -0.33
30 AT5G12930 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 0.57 0.32 -0.32
31 AT1G29160 Dof-type zinc finger DNA-binding family protein -0.57 0.34 -0.3
32 AT5G48175 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; EXPRESSED IN: hypocotyl, male gametophyte, root;
BEST Arabidopsis thaliana protein match is: Glycosyl
hydrolase superfamily protein (TAIR:AT3G09260.1); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.57 0.31 -0.32
33 AT3G47836 unknown protein; Has 1 Blast hits to 1 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.57 0.32 -0.34
34 AT3G23010 receptor like protein 36 receptor like protein 36, receptor
like protein 36		 0.57 0.34 -0.3
35 AT5G39100 germin-like protein 6 germin-like protein 6 -0.57 0.32 -0.3
36 AT1G05900 endonuclease III 2 ATNTH2, endonuclease III 2 0.57 0.31 -0.3
37 AT3G10880 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G05180.1); Has 15699 Blast
hits to 11378 proteins in 1134 species: Archae - 391;
Bacteria - 2054; Metazoa - 6851; Fungi - 1354; Plants -
1096; Viruses - 119; Other Eukaryotes - 3834 (source: NCBI
BLink).		 0.57 0.31 -0.33
38 AT3G03110 exportin 1B CRM1B, exportin 1B -0.56 0.31 -0.34
39 AT5G18420 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 25 plant
structures; EXPRESSED DURING: 15 growth stages; CONTAINS
InterPro DOMAIN/s: Protein of unknown function DUF2363
(InterPro:IPR019312); Has 1807 Blast hits to 1807 proteins
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes -
339 (source: NCBI BLink).		 -0.56 0.31 -0.3
40 AT4G02310 Galactose oxidase/kelch repeat superfamily protein -0.56 0.32 -0.28
41 AT5G10860 Cystathionine beta-synthase (CBS) family protein CBS domain containing protein 3 0.56 0.32 -0.32
42 ATMG00670 hypothetical protein ORF275 -0.56 0.3 -0.31
43 AT5G39430 Protein of unknown function (DUF1336) -0.56 0.33 -0.31
44 AT3G02680 nijmegen breakage syndrome 1 ATNBS1, nijmegen breakage syndrome
1		 -0.56 0.31 -0.31
45 AT5G57590 adenosylmethionine-8-amino-7-oxononanoate transaminases biotin auxotroph 1 0.56 0.33 -0.33
46 AT4G39180 Sec14p-like phosphatidylinositol transfer family protein ARABIDOPSIS THALIANA SECRETION 14,
SECRETION 14		 0.56 0.31 -0.34
47 AT1G33920 phloem protein 2-A4 phloem protein 2-A4, phloem
protein 2-A4		 0.56 0.31 -0.31
48 AT1G18830 Transducin/WD40 repeat-like superfamily protein -0.55 0.31 -0.31
49 AT5G26350 transposable element gene -0.55 0.33 -0.32
50 AT1G08100 nitrate transporter 2.2 ACH2, NITRATE TRANSPORTER 2.2,
nitrate transporter 2.2, NRT2;2AT		 -0.55 0.31 -0.33
51 AT2G28520 vacuolar proton ATPase A1 vacuolar proton ATPase A1 -0.55 0.3 -0.31
52 AT4G15350 cytochrome P450, family 705, subfamily A, polypeptide 2 cytochrome P450, family 705,
subfamily A, polypeptide 2		 -0.55 0.32 -0.31
53 AT5G59660 Leucine-rich repeat protein kinase family protein 0.55 0.3 -0.32
54 AT2G12900 Basic-leucine zipper (bZIP) transcription factor family
protein		 0.55 0.34 -0.31
55 AT5G64110 Peroxidase superfamily protein 0.55 0.33 -0.34
56 AT3G01130 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; EXPRESSED IN: male
gametophyte, pollen tube; EXPRESSED DURING: M germinated
pollen stage; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT5G15320.1); Has 64 Blast hits to 64
proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.55 0.31 -0.29
57 AT1G21950 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G21940.1); Has 10 Blast hits
to 10 proteins in 2 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 10; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.55 0.32 -0.31
58 AT4G19580 DNAJ heat shock N-terminal domain-containing protein -0.55 0.32 -0.33
59 AT3G44080 F-box family protein 0.55 0.31 -0.32
60 AT3G06310 Cox19-like CHCH family protein -0.54 0.3 -0.3
61 AT5G22410 root hair specific 18 root hair specific 18 -0.54 0.31 -0.32
62 AT3G12140 Emsy N Terminus (ENT)/ plant Tudor-like domains-containing
protein		 AtEML1, EMSY-like 1 -0.54 0.32 -0.32
63 AT1G76900 tubby like protein 1 tubby like protein 1, tubby like
protein 1		 0.54 0.32 -0.3
64 AT2G07760 Zinc knuckle (CCHC-type) family protein -0.54 0.32 -0.32
65 AT1G15320 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: flower; EXPRESSED
DURING: petal differentiation and expansion stage; Has 62
Blast hits to 62 proteins in 17 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.54 0.3 -0.32
66 AT3G10990 F-box associated ubiquitination effector family protein 0.54 0.31 -0.31
67 AT3G43790 zinc induced facilitator-like 2 zinc induced facilitator-like 2 0.54 0.3 -0.3
68 AT3G12850 COP9 signalosome complex-related / CSN complex-related -0.54 0.31 -0.3
69 AT3G08660 Phototropic-responsive NPH3 family protein -0.54 0.32 -0.31
70 AT5G29020 transposable element gene 0.54 0.32 -0.31
71 AT5G19360 calcium-dependent protein kinase 34 calcium-dependent protein kinase
34		 0.54 0.34 -0.31
72 AT5G45690 Protein of unknown function (DUF1264) 0.53 0.32 -0.31
73 AT5G54790 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G50930.1); Has 53 Blast hits
to 53 proteins in 10 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.53 0.34 -0.33
74 AT3G43170 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF295 (InterPro:IPR005174); BEST
Arabidopsis thaliana protein match is: Protein of unknown
function (DUF295) (TAIR:AT5G54330.1); Has 90 Blast hits to
90 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink).		 0.53 0.32 -0.33
75 AT1G33890 Avirulence induced gene (AIG1) family protein -0.53 0.3 -0.29
76 AT4G25790 CAP (Cysteine-rich secretory proteins, Antigen 5, and
Pathogenesis-related 1 protein) superfamily protein		 -0.53 0.33 -0.29
77 AT2G05950 transposable element gene 0.53 0.3 -0.31
78 AT4G31615 Transcriptional factor B3 family protein 0.53 0.32 -0.29
79 AT5G57650 eukaryotic translation initiation factor-related -0.53 0.31 -0.32
80 AT2G33080 receptor like protein 28 receptor like protein 28, receptor
like protein 28		 0.52 0.31 -0.32
81 AT2G13890 transposable element gene 0.52 0.33 -0.3
82 AT3G32130 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; BEST Arabidopsis thaliana protein match is:
Ribonuclease H-like superfamily protein (TAIR:AT3G25270.1);
Has 95 Blast hits to 95 proteins in 5 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 95; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 -0.52 0.3 -0.33
83 AT3G42940 BEST Arabidopsis thaliana protein match is: Zinc finger,
C3HC4 type (RING finger) family protein (TAIR:AT2G24480.1);
Has 66 Blast hits to 66 proteins in 3 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 -0.52 0.33 -0.36
84 AT3G43390 transposable element gene -0.52 0.3 -0.32
85 AT3G24750 unknown protein; Has 25 Blast hits to 25 proteins in 12
species: Archae - 0; Bacteria - 8; Metazoa - 2; Fungi - 0;
Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.52 0.32 -0.3
86 AT4G32180 pantothenate kinase 2 pantothenate kinase 2,
pantothenate kinase 2		 -0.52 0.32 -0.32
87 AT4G38940 Galactose oxidase/kelch repeat superfamily protein -0.52 0.3 -0.29
88 AT5G53480 ARM repeat superfamily protein -0.52 0.32 -0.31
89 AT3G28610 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.52 0.31 -0.31
90 AT1G23680 Domain of unknown function (DUF220) 0.51 0.32 -0.32
91 AT5G52290 shortage in chiasmata 1 SHORTAGE IN CHIASMATA 1 0.51 0.32 -0.32
92 AT4G00700 C2 calcium/lipid-binding plant phosphoribosyltransferase
family protein		 0.51 0.32 -0.31
93 AT3G44570 Arabidopsis retrotransposon ORF-1 protein 0.51 0.32 -0.32
94 AT1G41820 unknown protein; Has 46 Blast hits to 46 proteins in 21
species: Archae - 0; Bacteria - 6; Metazoa - 8; Fungi - 2;
Plants - 5; Viruses - 1; Other Eukaryotes - 24 (source:
NCBI BLink).		 0.51 0.31 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
95 C0057 Anthranilic acid - Anthranilate tryptophan biosynthesis,
benzoylanthranilate biosynthesis 		0.77 0.46 -0.44 C0057
96 C0056 AMP - AMP PRPP biosynthesis I,
fatty acid biosynthesis (plant mitochondria),
adenine and adenosine salvage VI,
biotin-carboxyl carrier protein assembly,
molybdenum cofactor biosynthesis II (eukaryotes),
gluconeogenesis I,
adenine and adenosine salvage II,
asparagine biosynthesis I,
L-glutamine biosynthesis II (tRNA-dependent),
trans-cinnamoyl-CoA biosynthesis,
IAA degradation V,
ethanol degradation II (cytosol),
arginine biosynthesis I,
IAA degradation IV,
fatty acid activation,
selenate reduction,
IAA biosynthesis VII,
4-hydroxybenzoate biosynthesis V,
tetrapyrrole biosynthesis I,
flavonoid biosynthesis,
indole-3-acetyl-amino acid biosynthesis,
glutamine biosynthesis III,
ethanol degradation IV (peroxisomal),
glycolysis I,
asparagine biosynthesis III (tRNA-dependent),
jasmonoyl-amino acid conjugates biosynthesis I,
molybdenum cofactor biosynthesis,
pyridine nucleotide cycling (plants),
scopoletin biosynthesis,
jasmonic acid biosynthesis,
adenosine nucleotides degradation I,
fatty acid beta-oxidation II (core pathway),
simple coumarins biosynthesis,
sulfate reduction II (assimilatory),
pantothenate biosynthesis,
sporopollenin precursor biosynthesis,
urea cycle,
thiamine biosynthesis II,
starch degradation II,
NAD biosynthesis I (from aspartate),
citrulline-nitric oxide cycle,
beta-alanine biosynthesis II,
arginine biosynthesis II (acetyl cycle),
suberin biosynthesis,
linoleate biosynthesis I (plants),
trans-zeatin biosynthesis,
tetrahydrofolate biosynthesis II,
purine nucleotides de novo biosynthesis II,
phenylpropanoid biosynthesis,
6-hydroxymethyl-dihydropterin diphosphate biosynthesis I,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
tRNA charging 		0.73 0.44 -0.43 C0056
97 C0109 Guanine - Guanine guanine and guanosine salvage II,
guanosine nucleotides degradation II 		0.73 0.46 -0.46 C0109
98 C0099 Glucose-1-phosphate α,β-D-Glucose-1-phosphate α-D-Glucose-1-phosphate; β-D-Glucose-1-phosphate galactose degradation I (Leloir pathway) 0.7 0.46 -0.46 C0099
99 C0234 Sinapoyl glucose 1-O-Sinapoyl-β-D-glucose 1-O-Sinapoyl-β-D-glucose sinapate ester biosynthesis 0.69 0.44 -0.45 C0234
100 C0030 3-Methylsulfinyl-n-propylglucosinolate - 3-Methylsulfinylpropyl-glucosinolate glucosinolate biosynthesis from homomethionine 0.68 0.44 -0.45 C0030
101 C0094 Galactosamine D-Galactosamine - - 0.67 0.43 -0.47
102 C0032 3-Phosphoglyceric acid 3-Phospho-(R)-glyceric acid 3-Phosphoglycerate glycolysis I,
gluconeogenesis I,
Calvin-Benson-Bassham cycle,
sucrose biosynthesis I,
serine biosynthesis,
photorespiration,
Rubisco shunt,
glycolysis IV (plant cytosol) 		0.67 0.45 -0.44 C0032