AT4G07890 : -
Query Information
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AGICode AT4G07890
Description transposable element gene
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G07890 transposable element gene 1 0.29 -0.32
2 AT3G06990 Cysteine/Histidine-rich C1 domain family protein 0.68 0.32 -0.3
3 AT3G07420 asparaginyl-tRNA synthetase 2 ASPARAGINYL-TRNA SYNTHETASE 2,
asparaginyl-tRNA synthetase 2,
SYNTHETASE C2, ASPARAGINYL-TRNA
SYNTHETASE 2		 -0.66 0.32 -0.31
4 AT1G52240 RHO guanyl-nucleotide exchange factor 11 ATROPGEF11, phytochrome
interacting RopGEF 1, RHO
guanyl-nucleotide exchange factor
11		 0.65 0.31 -0.32
5 AT1G72260 thionin 2.1 thionin 2.1, THI2.1.1 -0.65 0.32 -0.32
6 AT2G32950 Transducin/WD40 repeat-like superfamily protein ARABIDOPSIS THALIANA CONSTITUTIVE
PHOTOMORPHOGENIC 1, CONSTITUTIVE
PHOTOMORPHOGENIC 1, DEETIOLATED
MUTANT 340, EMBRYO DEFECTIVE 168,
FUSCA 1		 -0.64 0.32 -0.32
7 AT3G17520 Late embryogenesis abundant protein (LEA) family protein -0.64 0.31 -0.34
8 AT5G53670 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: sperm cell; Has 1807
Blast hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).		 -0.64 0.31 -0.29
9 AT5G07040 RING/U-box superfamily protein 0.64 0.32 -0.32
10 AT5G24390 Ypt/Rab-GAP domain of gyp1p superfamily protein 0.63 0.33 -0.32
11 AT5G59940 Cysteine/Histidine-rich C1 domain family protein 0.63 0.31 -0.31
12 AT5G01620 TRICHOME BIREFRINGENCE-LIKE 35 TRICHOME BIREFRINGENCE-LIKE 35 0.63 0.32 -0.32
13 AT1G03430 histidine-containing phosphotransfer factor 5 histidine-containing
phosphotransfer factor 5		 -0.62 0.3 -0.34
14 AT3G46810 Cysteine/Histidine-rich C1 domain family protein 0.62 0.32 -0.31
15 AT5G28880 transposable element gene -0.62 0.3 -0.32
16 AT4G37020 BEST Arabidopsis thaliana protein match is: eukaryotic
initiation factor 4A-III (TAIR:AT3G19760.1); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.61 0.34 -0.29
17 AT4G28180 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 15 plant
structures; EXPRESSED DURING: 8 growth stages; Has 1508
Blast hits to 1315 proteins in 223 species: Archae - 4;
Bacteria - 127; Metazoa - 687; Fungi - 310; Plants - 142;
Viruses - 28; Other Eukaryotes - 210 (source: NCBI BLink).		 0.61 0.29 -0.31
18 AT5G06960 OCS-element binding factor 5 OCS-element binding factor 5,
TGACG MOTIF-BINDING FACTOR 5		 -0.6 0.31 -0.32
19 AT1G26310 K-box region and MADS-box transcription factor family
protein 		AGAMOUS-like 10, CAULIFLOWER, CAL1 0.6 0.31 -0.32
20 AT5G01150 Protein of unknown function (DUF674) 0.6 0.32 -0.31
21 AT2G44730 Alcohol dehydrogenase transcription factor Myb/SANT-like
family protein		 0.59 0.32 -0.3
22 AT2G35230 VQ motif-containing protein IKU1, HAIKU1 0.59 0.33 -0.33
23 AT5G28210 mRNA capping enzyme family protein 0.59 0.31 -0.32
24 AT3G07830 Pectin lyase-like superfamily protein 0.59 0.32 -0.31
25 AT2G31930 unknown protein; Has 35333 Blast hits to 34131 proteins in
2444 species: Archae - 798; Bacteria - 22429; Metazoa -
974; Fungi - 991; Plants - 531; Viruses - 0; Other
Eukaryotes - 9610 (source: NCBI BLink).		 0.59 0.32 -0.34
26 AT4G02900 ERD (early-responsive to dehydration stress) family protein -0.59 0.33 -0.34
27 AT1G32230 WWE protein-protein interaction domain protein family ARABIDOPSIS THALIANA P8
(INTERACTING PROTEIN), AtRCD1,
CEO, CEO1, RADICAL-INDUCED CELL
DEATH1		 -0.59 0.33 -0.32
28 AT1G29180 Cysteine/Histidine-rich C1 domain family protein 0.59 0.32 -0.29
29 AT2G26280 CTC-interacting domain 7 CTC-interacting domain 7 -0.58 0.3 -0.33
30 AT5G29040 pseudogene, hypothetical protein -0.58 0.3 -0.32
31 AT1G01740 Protein kinase protein with tetratricopeptide repeat domain -0.58 0.31 -0.31
32 AT3G47400 Plant invertase/pectin methylesterase inhibitor superfamily 0.58 0.33 -0.32
33 AT2G05160 CCCH-type zinc fingerfamily protein with RNA-binding domain 0.58 0.32 -0.31
34 AT2G43840 UDP-glycosyltransferase 74 F1 UDP-glycosyltransferase 74 F1 -0.58 0.31 -0.32
35 AT5G10070 RNase L inhibitor protein-related -0.58 0.3 -0.3
36 AT3G13222 GBF-interacting protein 1 GBF-interacting protein 1 0.58 0.31 -0.3
37 AT2G27350 OTU-like cysteine protease family protein otubain-like deubiquitinase 1 -0.57 0.33 -0.31
38 AT1G12910 Transducin/WD40 repeat-like superfamily protein ANTHOCYANIN11, LIGHT-REGULATED WD
1		 0.57 0.31 -0.34
39 AT1G73510 unknown protein; Has 7 Blast hits to 7 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.57 0.3 -0.33
40 AT1G72350 MADS-box transcription factor family protein -0.57 0.32 -0.33
41 AT5G51810 gibberellin 20 oxidase 2 AT2353, ATGA20OX2, gibberellin 20
oxidase 2		 0.57 0.3 -0.31
42 AT2G14550 pseudogene, putative pre-mRNA splicing factor,
non-consensus splice donor TA at exon 5; blastp match of
67% identity and 1.1e-68 P-value to
GP|28374170|gb|AAH45264.1||BC045264 Similar to splicing
factor 3b, subunit 4, 49kD {Xenopus laevis}		 0.57 0.32 -0.33
43 AT1G29870 tRNA synthetase class II (G, H, P and S) family protein 0.57 0.3 -0.31
44 AT1G48220 Protein kinase superfamily protein -0.57 0.32 -0.32
45 AT2G23440 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: root; Has 25 Blast hits
to 25 proteins in 6 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.56 0.37 -0.29
46 AT4G31020 alpha/beta-Hydrolases superfamily protein 0.56 0.31 -0.33
47 AT1G50930 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G20557.1); Has 215 Blast hits
to 213 proteins in 63 species: Archae - 0; Bacteria - 2;
Metazoa - 83; Fungi - 10; Plants - 45; Viruses - 5; Other
Eukaryotes - 70 (source: NCBI BLink).		 0.56 0.32 -0.31
48 AT5G17700 MATE efflux family protein -0.56 0.31 -0.31
49 AT5G64390 RNA-binding KH domain-containing protein HUA ENHANCER 4 -0.56 0.3 -0.34
50 AT4G11780 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G23020.2); Has 550 Blast hits
to 387 proteins in 92 species: Archae - 0; Bacteria - 32;
Metazoa - 132; Fungi - 122; Plants - 80; Viruses - 0; Other
Eukaryotes - 184 (source: NCBI BLink).		 0.56 0.3 -0.3
51 AT5G54220 Cysteine-rich protein -0.56 0.3 -0.29
52 AT3G59910 Ankyrin repeat family protein -0.55 0.33 -0.32
53 AT3G29070 emp24/gp25L/p24 family/GOLD family protein 0.55 0.3 -0.32
54 AT4G32440 Plant Tudor-like RNA-binding protein -0.55 0.3 -0.34
55 AT1G15220 cytochrome c biogenesis protein family ATCCMH, CCMH 0.54 0.31 -0.31
56 AT5G26100 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: male gametophyte, pollen
tube; EXPRESSED DURING: L mature pollen stage, M germinated
pollen stage; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT3G44170.1); Has 1807 Blast hits to
1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 0.54 0.33 -0.33
57 AT2G19630 F-box and associated interaction domains-containing protein -0.54 0.31 -0.33
58 AT3G12470 Polynucleotidyl transferase, ribonuclease H-like
superfamily protein		 0.54 0.32 -0.31
59 AT2G44710 RNA-binding (RRM/RBD/RNP motifs) family protein -0.54 0.33 -0.31
60 AT3G03200 NAC domain containing protein 45 NAC domain containing protein 45,
NAC domain containing protein 45		 -0.54 0.32 -0.32
61 AT5G52580 RabGAP/TBC domain-containing protein -0.54 0.31 -0.32
62 AT2G36740 sequence-specific DNA binding transcription factors;DNA
binding;DNA binding		 ATSWC2, SWC2 -0.54 0.32 -0.32
63 AT3G22770 F-box associated ubiquitination effector family protein 0.53 0.3 -0.31
64 AT1G70910 RING/U-box superfamily protein DESPIERTO 0.53 0.32 -0.32
65 AT3G06090 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: flower, leaf, seed;
EXPRESSED DURING: petal differentiation and expansion
stage, LP.08 eight leaves visible, E expanded cotyledon
stage; Has 7 Blast hits to 7 proteins in 2 species: Archae
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7;
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.53 0.32 -0.31
66 AT3G22121 other RNA -0.53 0.31 -0.28
67 AT2G03170 SKP1-like 14 SKP1-like 14, SKP1-like 14 -0.53 0.32 -0.33
68 AT1G79830 golgin candidate 5 golgin candidate 5 -0.53 0.32 -0.33
69 AT5G02670 BEST Arabidopsis thaliana protein match is: poly(A)
polymerase 3 (TAIR:AT3G06560.1); Has 14 Blast hits to 8
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.53 0.28 -0.32
70 AT5G02680 LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant
structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: methionine--tRNA
ligase, putative / methionyl-tRNA synthetase, putative /
MetRS, putative (TAIR:AT4G13780.1); Has 252 Blast hits to
252 proteins in 89 species: Archae - 0; Bacteria - 71;
Metazoa - 93; Fungi - 0; Plants - 74; Viruses - 0; Other
Eukaryotes - 14 (source: NCBI BLink).		 -0.53 0.31 -0.3
71 AT2G21940 shikimate kinase 1 ATSK1, shikimate kinase 1 -0.53 0.33 -0.31
72 AT2G16450 F-box and associated interaction domains-containing protein 0.52 0.3 -0.32
73 AT4G13700 purple acid phosphatase 23 ATPAP23, purple acid phosphatase
23		 0.52 0.3 -0.31
74 AT3G56720 unknown protein; Has 6239 Blast hits to 4635 proteins in
365 species: Archae - 6; Bacteria - 230; Metazoa - 3389;
Fungi - 659; Plants - 656; Viruses - 13; Other Eukaryotes -
1286 (source: NCBI BLink).		 -0.52 0.31 -0.29
75 AT1G76850 exocyst complex component sec5 exocyst complex component sec5 -0.52 0.32 -0.31
76 AT1G73960 TBP-associated factor 2 TBP-associated factor 2 -0.52 0.31 -0.33
77 AT1G61950 calcium-dependent protein kinase 19 calcium-dependent protein kinase
19		 0.52 0.32 -0.33
78 AT1G05040 BEST Arabidopsis thaliana protein match is:
Ubiquitin-associated (UBA) protein (TAIR:AT2G33010.1); Has
14 Blast hits to 12 proteins in 3 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 14; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 -0.52 0.33 -0.34
79 AT4G04630 Protein of unknown function, DUF584 0.52 0.3 -0.3
80 AT4G21730 pseudogene of N-ethylmaleimide sensitive factor (NSF) -0.52 0.31 -0.35
81 AT3G20140 cytochrome P450, family 705, subfamily A, polypeptide 23 cytochrome P450, family 705,
subfamily A, polypeptide 23		 0.52 0.32 -0.31
82 AT3G45880 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 0.51 0.31 -0.31
83 AT4G33410 SIGNAL PEPTIDE PEPTIDASE-LIKE 1 SIGNAL PEPTIDE PEPTIDASE-LIKE 1,
SIGNAL PEPTIDE PEPTIDASE-LIKE 1		 0.51 0.32 -0.33
84 AT1G69820 gamma-glutamyl transpeptidase 3 gamma-glutamyl transpeptidase 3,
gamma-glutamyl transpeptidase 4		 -0.51 0.31 -0.32
85 AT5G58580 TOXICOS EN LEVADURA 63 TOXICOS EN LEVADURA 63, TOXICOS EN
LEVADURA 63		 0.51 0.31 -0.34
86 AT1G15830 unknown protein; Has 165982 Blast hits to 57214 proteins in
2459 species: Archae - 263; Bacteria - 44622; Metazoa -
55751; Fungi - 10656; Plants - 17613; Viruses - 2527; Other
Eukaryotes - 34550 (source: NCBI BLink).		 -0.51 0.31 -0.3
87 AT1G02813 Protein of unknown function, DUF538 0.51 0.3 -0.31
88 AT2G34990 RING/U-box superfamily protein 0.51 0.33 -0.34
89 AT3G23980 BLISTER BLISTER, KOLD SENSITIV 1 -0.5 0.3 -0.31
90 AT5G61050 histone deacetylase-related / HD-related -0.5 0.31 -0.32
91 AT2G30630 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.5 0.32 -0.33
92 AT1G47885 Ribonuclease inhibitor -0.5 0.3 -0.33
93 AT3G23580 ribonucleotide reductase 2A RNR2, ribonucleotide reductase 2A -0.5 0.32 -0.32
94 AT2G38900 Serine protease inhibitor, potato inhibitor I-type family
protein		 -0.5 0.32 -0.33
95 AT1G52920 G protein coupled receptor G-PROTEIN COUPLED RECEPTOR 2, G
protein coupled receptor		 -0.5 0.3 -0.32
96 AT1G60450 galactinol synthase 7 galactinol synthase 7, galactinol
synthase 7		 -0.5 0.31 -0.32
97 AT2G04990 transposable element gene -0.5 0.29 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
98 C0110 Guanosine - Guanosine guanosine nucleotides degradation I,
guanine and guanosine salvage II,
guanosine nucleotides degradation II,
guanine and guanosine salvage III 		-0.65 0.47 -0.45 C0110
99 C0179 MST_2494.8 - - - 0.56 0.31 -0.33