AT4G04280 : -
Query Information
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AGICode AT4G04280
Description transposable element gene
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G04280 transposable element gene 1 0.29 -0.32
2 AT4G38190 cellulose synthase like D4 ARABIDOPSIS THALIANA CELLULOSE
SYNTHASE-LIKE D4, cellulose
synthase like D4		 0.61 0.31 -0.3
3 AT4G36790 Major facilitator superfamily protein -0.59 0.3 -0.31
4 AT2G18610 unknown protein; Has 1 Blast hits to 1 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.59 0.31 -0.31
5 AT5G46740 ubiquitin-specific protease 21 ubiquitin-specific protease 21 -0.58 0.31 -0.29
6 AT4G21950 unknown protein; Has 2 Blast hits to 2 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.57 0.33 -0.3
7 AT2G10380 transposable element gene -0.57 0.29 -0.31
8 AT3G05780 lon protease 3 lon protease 3 0.56 0.33 -0.34
9 AT5G49190 sucrose synthase 2 ATSUS2, SUCROSE SYNTHASE FROM
ARABIDOPSIS, sucrose synthase 2		 0.56 0.31 -0.31
10 AT3G56630 cytochrome P450, family 94, subfamily D, polypeptide 2 cytochrome P450, family 94,
subfamily D, polypeptide 2		 0.56 0.32 -0.32
11 AT5G45690 Protein of unknown function (DUF1264) -0.55 0.31 -0.32
12 AT1G01470 Late embryogenesis abundant protein LATE EMBRYOGENESIS ABUNDANT 14,
LIGHT STRESS-REGULATED 3		 -0.55 0.3 -0.31
13 AT5G18360 Disease resistance protein (TIR-NBS-LRR class) family -0.55 0.33 -0.29
14 AT1G17040 SH2 domain protein A ARABIDOPSIS THALIANA SH2 DOMAIN
PROTEIN A, SH2 domain protein A,
STAT-TYPE LINKER-SH2 DOMAIN FACTOR
A		 -0.55 0.3 -0.32
15 AT4G21090 MITOCHONDRIAL FERREDOXIN 2 ARABIDOPSIS MITOCHONDRIAL
FERREDOXIN 2, MITOCHONDRIAL
FERREDOXIN 2		 -0.54 0.32 -0.32
16 AT3G06260 galacturonosyltransferase-like 4 galacturonosyltransferase-like 4,
galactinol synthase 9		 -0.54 0.31 -0.31
17 AT2G17620 Cyclin B2;1 Cyclin B2;1 -0.54 0.33 -0.31
18 AT1G04730 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 CHROMOSOME TRANSMISSION FIDELITY
18		 -0.54 0.32 -0.33
19 AT4G07540 transposable element gene -0.54 0.33 -0.32
20 AT5G19640 Major facilitator superfamily protein -0.53 0.32 -0.34
21 AT5G25120 ytochrome p450, family 71, subfamily B, polypeptide 11 ytochrome p450, family 71,
subfamily B, polypeptide 11		 0.53 0.3 -0.3
22 AT1G05900 endonuclease III 2 ATNTH2, endonuclease III 2 -0.53 0.29 -0.33
23 AT5G64450 BEST Arabidopsis thaliana protein match is: Putative
endonuclease or glycosyl hydrolase (TAIR:AT3G62200.1); Has
1807 Blast hits to 1807 proteins in 277 species: Archae -
0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).		 0.53 0.33 -0.31
24 AT4G16820 alpha/beta-Hydrolases superfamily protein phospholipase A I beta 2 -0.52 0.32 -0.3
25 AT5G51420 long-chain-alcohol O-fatty-acyltransferase family protein /
wax synthase family protein		 0.52 0.31 -0.32
26 AT1G33080 MATE efflux family protein 0.52 0.33 -0.29
27 AT2G19280 Pentatricopeptide repeat (PPR) superfamily protein -0.52 0.35 -0.32
28 AT1G37060 transposable element gene 0.51 0.33 -0.31
29 AT3G26810 auxin signaling F-box 2 auxin signaling F-box 2 0.51 0.32 -0.34
30 AT1G64010 Serine protease inhibitor (SERPIN) family protein 0.51 0.32 -0.34
31 AT1G63750 Disease resistance protein (TIR-NBS-LRR class) family 0.51 0.31 -0.33
32 AT2G33080 receptor like protein 28 receptor like protein 28, receptor
like protein 28		 -0.5 0.3 -0.3
33 AT5G51580 unknown protein; Has 8 Blast hits to 6 proteins in 4
species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0;
Plants - 5; Viruses - 0; Other Eukaryotes - 1 (source: NCBI
BLink).		 0.5 0.31 -0.33
34 AT1G05880 RING/U-box superfamily protein ARIADNE 12, ARABIDOPSIS ARIADNE 12 -0.5 0.29 -0.33
35 AT4G29800 PATATIN-like protein 8 PLA IVD, PATATIN-like protein 8 -0.5 0.31 -0.32
36 AT5G53960 ATP binding;DNA binding;DNA topoisomerase
(ATP-hydrolyzing)s		 0.49 0.33 -0.31
37 AT1G60090 beta glucosidase 4 beta glucosidase 4 0.48 0.31 -0.29
38 AT1G79170 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G28590.1); Has 12 Blast hits
to 12 proteins in 8 species: Archae - 0; Bacteria - 0;
Metazoa - 1; Fungi - 0; Plants - 3; Viruses - 0; Other
Eukaryotes - 8 (source: NCBI BLink).		 -0.48 0.31 -0.32
39 AT4G04170 transposable element gene -0.48 0.31 -0.3
40 AT4G02910 unknown protein; Has 5 Blast hits to 5 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.48 0.33 -0.33
41 AT1G67580 Protein kinase superfamily protein 0.48 0.33 -0.33
42 AT2G19050 GDSL-like Lipase/Acylhydrolase superfamily protein 0.47 0.32 -0.32
43 AT2G13890 transposable element gene -0.47 0.33 -0.33
44 AT3G42550 Eukaryotic aspartyl protease family protein -0.47 0.31 -0.31
45 AT5G25950 Protein of Unknown Function (DUF239) 0.47 0.33 -0.29
46 AT3G10990 F-box associated ubiquitination effector family protein -0.47 0.32 -0.32
47 AT4G28900 transposable element gene -0.47 0.32 -0.32
48 AT1G18030 Protein phosphatase 2C family protein -0.47 0.32 -0.32
49 AT4G27150 seed storage albumin 2 AT2S2, seed storage albumin 2 0.46 0.32 -0.31
50 AT2G04660 anaphase-promoting complex/cyclosome 2 anaphase-promoting
complex/cyclosome 2		 -0.46 0.3 -0.32
51 AT1G28550 RAB GTPase homolog A1I RAB GTPase homolog A1I, RAB GTPase
homolog A1I		 -0.45 0.3 -0.31
52 AT4G01530 transposable element gene -0.45 0.31 -0.32
53 AT5G10660 calmodulin-binding protein-related 0.45 0.31 -0.32
54 AT5G52480 RNI-like superfamily protein 0.44 0.32 -0.33
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
55 C0087 Erythrose-4-phosphate D-Erythrose-4-phosphate D-Erythrose-4-phosphate Rubisco shunt,
pentose phosphate pathway (non-oxidative branch),
chorismate biosynthesis,
Calvin-Benson-Bassham cycle 		-0.67 0.43 -0.45 C0087
56 C0195 Phenylpyruvic acid - Phenylpyruvate phenylalanine degradation III -0.65 0.46 -0.44 C0195
57 C0094 Galactosamine D-Galactosamine - - -0.64 0.45 -0.48
58 C0186 NAD - NAD+ ammonia assimilation cycle II,
aspartate degradation II,
adenosine nucleotides degradation I,
plant sterol biosynthesis II,
UDP-D-xylose and UDP-D-glucuronate biosynthesis,
NAD biosynthesis I (from aspartate),
ethanol degradation IV (peroxisomal),
abscisic acid biosynthesis,
palmitate biosynthesis II (bacteria and plants),
zeaxanthin biosynthesis,
sucrose degradation to ethanol and lactate (anaerobic),
glutamate degradation IV,
stearate biosynthesis II (plants),
guanosine nucleotides degradation II,
glutamate degradation I,
mannitol degradation II,
glycerol-3-phosphate shuttle,
2-ketoglutarate dehydrogenase complex,
arginine degradation I (arginase pathway),
aerobic respiration (alternative oxidase pathway),
branched-chain alpha-keto acid dehydrogenase complex,
4-aminobutyrate degradation IV,
glycolysis I,
glycine cleavage complex,
lysine degradation II,
fatty acid beta-oxidation II (core pathway),
nitrate reduction II (assimilatory),
TCA cycle variation V (plant),
leucine degradation I,
thiamine biosynthesis II,
acetaldehyde biosynthesis I,
sorbitol degradation I,
glutamine biosynthesis III,
aerobic respiration (cytochrome c),
ethanol degradation I,
ascorbate biosynthesis I (L-galactose pathway),
glycolysis IV (plant cytosol),
benzoate biosynthesis II (CoA-independent, non-beta-oxidative),
siroheme biosynthesis,
TCA cycle variation III (eukaryotic),
isoleucine degradation I,
pyridine nucleotide cycling (plants),
tyrosine biosynthesis I,
gluconeogenesis I,
glycine betaine biosynthesis III (plants),
traumatin and (Z)-3-hexen-1-yl acetate biosynthesis,
NAD/NADH phosphorylation and dephosphorylation,
guanosine nucleotides degradation I,
purine nucleotides de novo biosynthesis II,
acetyl-CoA biosynthesis (from pyruvate),
serine biosynthesis,
photorespiration,
histidine biosynthesis,
glyoxylate cycle,
jasmonic acid biosynthesis,
alanine degradation II (to D-lactate),
a ubiquinone + NADH + H+ -> a ubiquinol + NAD+,
putrescine degradation IV,
brassinosteroid biosynthesis III,
fatty acid elongation -- saturated,
pyruvate fermentation to ethanol II,
beta-alanine biosynthesis II,
4-hydroxybenzoate biosynthesis V,
plant sterol biosynthesis,
urate biosynthesis/inosine 5'-phosphate degradation,
phenylalanine degradation III,
glutamate biosynthesis IV,
leucine biosynthesis,
fatty acid alpha-oxidation,
a ubiquinone + NADH + H+ -> NAD+ + a ubiquinol,
Fe(III)-reduction and Fe(II) transport,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
phenylethanol biosynthesis,
pyruvate fermentation to lactate,
superpathway of glyoxylate cycle and fatty acid degradation,
fatty acid omega-oxidation,
galactose degradation III,
ethanol degradation II (cytosol),
sucrose biosynthesis I,
valine degradation I,
folate transformations II 		-0.64 0.43 -0.44 C0186
59 C0015 p-Coumaric acid - 4-Coumarate scopoletin biosynthesis,
free phenylpropanoid acid biosynthesis,
phenylpropanoid biosynthesis,
simple coumarins biosynthesis,
4-hydroxybenzoate biosynthesis V,
suberin biosynthesis,
phenylpropanoid biosynthesis, initial reactions,
flavonoid biosynthesis 		-0.6 0.46 -0.45 C0015
60 C0013 N2-Acetyl-Ornithine N2-Acetyl-L-ornithine N-acetyl-L-ornithine arginine biosynthesis II (acetyl cycle),
ornithine biosynthesis 		-0.52 0.31 -0.31 C0013