AT4G03940 : -
Query Information
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AGICode AT4G03940
Description unknown protein; Has 8 Blast hits to 8 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G03940 unknown protein; Has 8 Blast hits to 8 proteins in 3
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 6; Viruses - 0; Other Eukaryotes - 2 (source: NCBI
BLink).		 1 0.33 -0.32
2 AT2G18260 syntaxin of plants 112 ATSYP112, syntaxin of plants 112 0.65 0.33 -0.32
3 AT3G04250 F-box associated ubiquitination effector family protein 0.64 0.28 -0.31
4 AT1G50310 sugar transporter 9 SUGAR TRANSPORTER 9, sugar
transporter 9		 0.63 0.3 -0.3
5 AT2G39240 RNA polymerase I specific transcription initiation factor
RRN3 protein		 -0.62 0.31 -0.31
6 AT1G50080 BEST Arabidopsis thaliana protein match is: RNA-directed
DNA polymerase (reverse transcriptase)-related family
protein (TAIR:AT1G60720.1); Has 42 Blast hits to 42
proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 0.61 0.32 -0.32
7 AT4G02450 HSP20-like chaperones superfamily protein -0.6 0.31 -0.31
8 AT1G39430 transposable element gene 0.6 0.32 -0.3
9 AT3G04890 Uncharacterized conserved protein (DUF2358) 0.6 0.32 -0.31
10 AT5G07520 glycine-rich protein 18 ATGRP-8, ATGRP18, glycine-rich
protein 18		 0.59 0.32 -0.31
11 AT5G23340 RNI-like superfamily protein 0.58 0.32 -0.31
12 AT4G28760 Protein of unknown function (DUF3741) 0.58 0.31 -0.33
13 AT1G26530 PIN domain-like family protein -0.58 0.31 -0.32
14 AT5G40560 DegP protease 13 DegP protease 13 -0.58 0.31 -0.31
15 AT1G25240 ENTH/VHS/GAT family protein -0.58 0.32 -0.29
16 AT4G22030 F-box family protein with a domain of unknown function
(DUF295)		 0.57 0.3 -0.3
17 AT2G16340 unknown protein; Has 64 Blast hits to 48 proteins in 21
species: Archae - 2; Bacteria - 36; Metazoa - 11; Fungi -
6; Plants - 3; Viruses - 2; Other Eukaryotes - 4 (source:
NCBI BLink).		 0.57 0.3 -0.3
18 AT4G08490 transposable element gene 0.57 0.32 -0.32
19 AT2G35530 basic region/leucine zipper transcription factor 16 AtbZIP16, basic region/leucine
zipper transcription factor 16		 -0.57 0.32 -0.34
20 AT3G16120 Dynein light chain type 1 family protein -0.57 0.31 -0.29
21 AT1G70460 root hair specific 10 proline-rich extensin-like
receptor kinase 13, proline-rich
extensin-like receptor kinase 13,
root hair specific 10		 -0.57 0.32 -0.32
22 AT4G20370 PEBP (phosphatidylethanolamine-binding protein) family
protein		 TWIN SISTER OF FT 0.56 0.32 -0.32
23 AT1G19170 Pectin lyase-like superfamily protein 0.56 0.31 -0.32
24 AT3G10240 F-box and associated interaction domains-containing protein 0.56 0.3 -0.34
25 AT4G05050 ubiquitin 11 ubiquitin 11 -0.56 0.31 -0.32
26 AT4G35670 Pectin lyase-like superfamily protein -0.55 0.34 -0.31
27 AT4G08000 transposable element gene -0.55 0.3 -0.32
28 AT4G01880 methyltransferases -0.54 0.33 -0.31
29 AT3G02670 Glycine-rich protein family -0.54 0.31 -0.29
30 AT3G60110 DNA-binding bromodomain-containing protein -0.54 0.3 -0.3
31 AT5G35510 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.54 0.31 -0.31
32 AT2G34960 cationic amino acid transporter 5 cationic amino acid transporter 5 0.54 0.32 -0.34
33 AT5G25060 RNA recognition motif (RRM)-containing protein -0.54 0.31 -0.31
34 AT4G07780 transposable element gene -0.54 0.31 -0.32
35 AT1G67240 transposable element gene -0.53 0.31 -0.31
36 AT4G39570 Galactose oxidase/kelch repeat superfamily protein 0.53 0.31 -0.33
37 AT4G30070 low-molecular-weight cysteine-rich 59 low-molecular-weight cysteine-rich
59		 0.53 0.3 -0.3
38 AT1G78710 TRICHOME BIREFRINGENCE-LIKE 42 TRICHOME BIREFRINGENCE-LIKE 42 0.53 0.32 -0.31
39 AT3G30710 transposable element gene 0.53 0.31 -0.31
40 AT1G77080 K-box region and MADS-box transcription factor family
protein 		AGAMOUS-like 27, FLOWERING LOCUS
M, MADS AFFECTING FLOWERING 1		 -0.53 0.33 -0.34
41 AT4G19240 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G43280.1); Has 19 Blast hits
to 17 proteins in 2 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.52 0.3 -0.3
42 AT4G34660 SH3 domain-containing protein -0.52 0.33 -0.33
43 AT2G29970 Double Clp-N motif-containing P-loop nucleoside
triphosphate hydrolases superfamily protein		 0.52 0.3 -0.32
44 AT5G51990 C-repeat-binding factor 4 C-repeat-binding factor 4,
DEHYDRATION-RESPONSIVE
ELEMENT-BINDING PROTEIN 1D		 0.52 0.33 -0.31
45 AT4G10240 B-box zinc finger family protein -0.52 0.31 -0.29
46 AT1G14800 Nucleic acid-binding, OB-fold-like protein -0.51 0.3 -0.31
47 AT4G03740 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 0.51 0.36 -0.32
48 AT3G45950 Pre-mRNA splicing Prp18-interacting factor -0.51 0.31 -0.31
49 AT1G74860 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G19010.1); Has 210 Blast hits
to 193 proteins in 61 species: Archae - 0; Bacteria - 9;
Metazoa - 75; Fungi - 18; Plants - 58; Viruses - 1; Other
Eukaryotes - 49 (source: NCBI BLink).		 0.51 0.33 -0.32
50 AT3G57140 sugar-dependent 1-like sugar-dependent 1-like -0.5 0.3 -0.31
51 AT1G36000 LOB domain-containing protein 5 LOB domain-containing protein 5 -0.5 0.33 -0.3
52 AT4G04790 Tetratricopeptide repeat (TPR)-like superfamily protein -0.5 0.33 -0.33
53 AT5G49820 Protein of unknown function, DUF647 ROOT UV-B SENSITIVE 6 -0.5 0.31 -0.3
54 AT1G20380 Prolyl oligopeptidase family protein 0.5 0.31 -0.34
55 AT4G01130 GDSL-like Lipase/Acylhydrolase superfamily protein -0.5 0.32 -0.32
56 AT4G07430 transposable element gene -0.5 0.31 -0.33
57 AT3G29570 unknown protein; Has 271 Blast hits to 164 proteins in 59
species: Archae - 0; Bacteria - 19; Metazoa - 88; Fungi -
42; Plants - 45; Viruses - 9; Other Eukaryotes - 68
(source: NCBI BLink).		 0.5 0.31 -0.31
58 AT4G15030 CONTAINS InterPro DOMAIN/s: Folate-sensitive fragile site
protein Fra10Ac1 (InterPro:IPR019129); Has 8455 Blast hits
to 5700 proteins in 376 species: Archae - 6; Bacteria -
264; Metazoa - 3820; Fungi - 744; Plants - 645; Viruses -
76; Other Eukaryotes - 2900 (source: NCBI BLink).		 -0.5 0.29 -0.3
59 AT5G42280 Cysteine/Histidine-rich C1 domain family protein -0.49 0.32 -0.33
60 AT1G11915 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: root; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT3G17350.1); Has 261 Blast hits to 261 proteins in
13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 261; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.49 0.32 -0.31
61 AT4G21200 gibberellin 2-oxidase 8 ARABIDOPSIS THALIANA GIBBERELLIN
2-OXIDASE 8, gibberellin 2-oxidase
8		 -0.49 0.32 -0.31
62 AT1G62680 Pentatricopeptide repeat (PPR) superfamily protein 0.49 0.32 -0.31
63 AT1G37140 MEI2 C-terminal RRM only like 1 MEI2 C-terminal RRM only like 1 -0.49 0.31 -0.31
64 AT3G01780 ARM repeat superfamily protein TPLATE -0.49 0.3 -0.33
65 AT5G03000 Galactose oxidase/kelch repeat superfamily protein 0.49 0.31 -0.32
66 AT3G17140 Plant invertase/pectin methylesterase inhibitor superfamily
protein		 -0.48 0.33 -0.32
67 AT3G19890 F-box family protein 0.48 0.3 -0.29
68 AT3G16857 response regulator 1 response regulator 1, response
regulator 1		 0.48 0.31 -0.33
69 AT4G28550 Ypt/Rab-GAP domain of gyp1p superfamily protein -0.48 0.33 -0.31
70 AT4G02540 Cysteine/Histidine-rich C1 domain family protein -0.48 0.32 -0.34
71 AT2G18510 RNA-binding (RRM/RBD/RNP motifs) family protein embryo defective 2444 -0.48 0.3 -0.34
72 AT1G70060 SIN3-like 4 SIN3-like 4 -0.48 0.31 -0.31
73 AT2G42030 RING/U-box superfamily protein 0.48 0.32 -0.33
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
74 C0244 Sucrose D-Sucrose Sucrose stachyose biosynthesis,
fructan degradation,
stachyose degradation,
galactose degradation III,
superpathway of sucrose and starch metabolism II (photosynthetic tissue),
sucrose degradation III,
UDP-glucose biosynthesis (from sucrose),
ajugose biosynthesis II (galactinol-independent),
sucrose biosynthesis I 		-0.5 0.32 -0.31 C0244
75 C0101 Glutamic acid D,L-Glutamic acid L-Glutamate; D-Glutamate tyrosine biosynthesis I,
serine biosynthesis,
tyrosine degradation I,
uridine-5'-phosphate biosynthesis,
proline biosynthesis III,
glutamate biosynthesis V,
glycine biosynthesis,
lysine biosynthesis VI,
leucine biosynthesis,
UDP-N-acetyl-D-glucosamine biosynthesis II,
tRNA charging,
gamma-glutamyl cycle (plant pathway),
L-Ndelta-acetylornithine biosynthesis,
tryptophan biosynthesis,
glucosinolate biosynthesis from pentahomomethionine,
4-hydroxyphenylpyruvate biosynthesis,
proline degradation II,
photorespiration,
5-aminoimidazole ribonucleotide biosynthesis I,
folate polyglutamylation,
ammonia assimilation cycle II,
arginine degradation VI (arginase 2 pathway),
asparagine biosynthesis III (tRNA-dependent),
tetrahydrofolate biosynthesis II,
glutamine biosynthesis III,
valine degradation I,
glucosinolate biosynthesis from dihomomethionine,
phenylalanine biosynthesis II,
citrulline biosynthesis,
gamma-glutamyl cycle,
indole-3-acetyl-amino acid biosynthesis,
purine nucleotides de novo biosynthesis II,
IAA biosynthesis I,
NAD biosynthesis I (from aspartate),
alanine biosynthesis II,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
glucosinolate biosynthesis from homomethionine,
phenylalanine degradation III,
ornithine biosynthesis,
glutathione-mediated detoxification II,
pyrimidine ribonucleotides interconversion,
indole glucosinolate breakdown (active in intact plant cell),
aspartate degradation II,
glucosinolate biosynthesis from trihomomethionine,
glucosinolate biosynthesis from tetrahomomethionine,
L-glutamine biosynthesis II (tRNA-dependent),
camalexin biosynthesis,
glutathione biosynthesis,
aspartate biosynthesis,
leucine degradation I,
glutathione degradation,
pyridine nucleotide cycling (plants),
glutamate degradation I,
valine biosynthesis,
glucosinolate biosynthesis from tryptophan,
arginine biosynthesis II (acetyl cycle),
isoleucine biosynthesis I (from threonine),
arginine biosynthesis I,
arginine degradation I (arginase pathway),
glucosinolate biosynthesis from hexahomomethionine,
tetrapyrrole biosynthesis I,
alanine degradation III,
pyridoxal 5'-phosphate biosynthesis II,
glutamate biosynthesis IV,
glutamate degradation IV,
asparagine biosynthesis I,
histidine biosynthesis,
lysine degradation II,
pantothenate biosynthesis,
isoleucine degradation I,
folate polyglutamylation II,
glutamine biosynthesis I,
glucosinolate biosynthesis from phenylalanine,
tyrosine biosynthesis II,
nitrate reduction II (assimilatory),
alanine degradation II (to D-lactate) 		0.49 0.32 -0.32 C0101