AT4G02490 : -
Query Information
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AGICode AT4G02490
Description transposable element gene
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT4G02490 transposable element gene 1 0.3 -0.3
2 AT4G22970 homolog of separase homolog of separase, homolog of
separase, SEPARASE, RADIALLY
SWOLLEN 4		 -0.69 0.32 -0.32
3 AT5G61320 cytochrome P450, family 89, subfamily A, polypeptide 3 cytochrome P450, family 89,
subfamily A, polypeptide 3		 0.67 0.32 -0.32
4 AT3G19740 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.65 0.32 -0.33
5 AT4G11840 phospholipase D gamma 3 phospholipase D gamma 3 -0.64 0.3 -0.3
6 AT2G01770 vacuolar iron transporter 1 ATVIT1, vacuolar iron transporter
1		 -0.64 0.31 -0.32
7 AT5G11400 Protein kinase superfamily protein -0.63 0.3 -0.33
8 AT3G08730 protein-serine kinase 1 ARABIDOPSIS THALIANA
PROTEIN-SERINE KINASE 1,
ARABIDOPSIS THALIANA
PROTEIN-SERINE KINASE 6, ATS6K1,
protein-serine kinase 1,
ROTEIN-SERINE KINASE 6, P70
RIBOSOMAL S6 KINASE		 -0.63 0.3 -0.32
9 AT5G51200 Protein of unknown function (DUF3414) EMBRYO DEFECTIVE 3142 -0.63 0.3 -0.32
10 AT3G22640 cupin family protein PAP85 0.63 0.31 -0.32
11 AT2G30380 Plant protein of unknown function (DUF641) -0.62 0.31 -0.34
12 AT3G13840 GRAS family transcription factor -0.61 0.31 -0.33
13 AT2G04070 MATE efflux family protein -0.61 0.3 -0.33
14 AT1G28340 receptor like protein 4 receptor like protein 4, receptor
like protein 4		 -0.6 0.3 -0.3
15 AT1G70000 myb-like transcription factor family protein -0.6 0.3 -0.32
16 AT3G53910 malate dehydrogenase-related -0.59 0.33 -0.33
17 AT2G41930 Protein kinase superfamily protein 0.59 0.31 -0.32
18 AT1G06070 Basic-leucine zipper (bZIP) transcription factor family
protein		 -0.58 0.32 -0.32
19 AT4G01026 PYR1-like 7 PYR1-like 7, regulatory components
of ABA receptor 2		 0.58 0.33 -0.32
20 AT3G44630 Disease resistance protein (TIR-NBS-LRR class) family -0.58 0.31 -0.32
21 AT2G02360 phloem protein 2-B10 phloem protein 2-B10, phloem
protein 2-B10		 -0.58 0.34 -0.3
22 AT5G12430 Heat shock protein DnaJ with tetratricopeptide repeat tetratricopeptide repeat 16 -0.58 0.32 -0.31
23 AT2G43330 inositol transporter 1 INOSITOL TRANSPORTER 1, inositol
transporter 1		 0.58 0.34 -0.31
24 AT4G36790 Major facilitator superfamily protein 0.57 0.32 -0.31
25 AT1G13740 ABI five binding protein 2 ABI five binding protein 2 0.57 0.31 -0.32
26 AT5G46470 disease resistance protein (TIR-NBS-LRR class) family RESISTANT TO P. SYRINGAE 6 -0.56 0.32 -0.32
27 AT1G59725 DNAJ heat shock family protein 0.56 0.31 -0.31
28 AT5G47360 Tetratricopeptide repeat (TPR)-like superfamily protein -0.56 0.31 -0.32
29 AT5G24480 Beta-galactosidase related protein -0.56 0.32 -0.32
30 AT1G48640 Transmembrane amino acid transporter family protein 0.55 0.32 -0.31
31 AT5G58550 ETO1-like 2 ETO1-like 2 -0.55 0.31 -0.33
32 AT1G13630 Tetratricopeptide repeat (TPR)-like superfamily protein -0.55 0.3 -0.33
33 AT5G51630 Disease resistance protein (TIR-NBS-LRR class) family -0.55 0.31 -0.32
34 AT5G04650 transposable element gene -0.55 0.3 -0.29
35 AT2G34740 Protein phosphatase 2C family protein 0.55 0.31 -0.32
36 AT3G58790 galacturonosyltransferase 15 galacturonosyltransferase 15 0.55 0.33 -0.31
37 AT1G71696 carboxypeptidase D, putative SUPPRESSOR OF LLP1 1 -0.54 0.32 -0.33
38 AT4G00760 pseudo-response regulator 8 pseudo-response regulator 8,
PSEUDO-RESPONSE REGULATOR 8		 -0.54 0.32 -0.33
39 AT2G35570 pseudogene, serpin (serine protease inhibitor) family,
similar to phloem serpin-1 (Cucurbita maxima) GI:9937311;
blastp match of 49% identity and 9.9e-85 P-value to
GP|26224736|gb|AAN76362.1||AY158152 serpin-like protein
{Citrus x paradisi}		 0.54 0.33 -0.31
40 AT1G13220 nuclear matrix constituent protein-related CROWDED NUCLEI 2, LITTLE NUCLEI2 -0.54 0.32 -0.31
41 AT4G05230 Ubiquitin-like superfamily protein -0.54 0.3 -0.31
42 AT5G65160 tetratricopeptide repeat (TPR)-containing protein tetratricopeptide repeat 14 0.53 0.31 -0.33
43 AT3G28830 Protein of unknown function (DUF1216) -0.53 0.3 -0.34
44 AT1G14970 O-fucosyltransferase family protein -0.53 0.33 -0.34
45 AT1G15360 Integrase-type DNA-binding superfamily protein SHINE 1, WAX INDUCER 1 0.53 0.3 -0.33
46 AT3G57960 Emsy N Terminus (ENT) domain-containing protein -0.53 0.33 -0.32
47 AT2G10500 transposable element gene 0.52 0.31 -0.32
48 AT2G11890 adenylate cyclases -0.52 0.29 -0.33
49 AT1G20690 SWI-SNF-related chromatin binding protein -0.52 0.3 -0.32
50 AT3G52260 Pseudouridine synthase family protein 0.52 0.32 -0.31
51 AT5G58460 cation/H+ exchanger 25 ARABIDOPSIS THALIANA CATION/H+
EXCHANGER 25, cation/H+ exchanger
25		 -0.52 0.31 -0.32
52 AT3G47630 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; EXPRESSED IN: 21 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Mitochondrial matrix Mmp37 (InterPro:IPR015222); Has 325
Blast hits to 325 proteins in 172 species: Archae - 0;
Bacteria - 0; Metazoa - 109; Fungi - 140; Plants - 43;
Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink).		 0.52 0.31 -0.32
53 AT5G58100 unknown protein; INVOLVED IN: pollen exine formation;
EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8
growth stages; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT3G28720.1); Has 35333 Blast hits to
34131 proteins in 2444 species: Archae - 798; Bacteria -
22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses -
0; Other Eukaryotes - 9610 (source: NCBI BLink).		 -0.51 0.32 -0.31
54 AT2G04370 unknown protein; Has 2 Blast hits to 2 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.51 0.31 -0.31
55 AT3G42880 Leucine-rich repeat protein kinase family protein 0.51 0.3 -0.34
56 AT2G14300 transposable element gene 0.5 0.33 -0.29
57 AT4G22800 unknown protein; Has 2 Blast hits to 2 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.5 0.32 -0.32
58 AT3G46770 AP2/B3-like transcriptional factor family protein -0.5 0.31 -0.32
59 AT1G48800 Terpenoid cyclases/Protein prenyltransferases superfamily
protein		 -0.5 0.34 -0.33
60 AT1G80020 transposable element gene -0.5 0.31 -0.3
61 AT1G12830 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; Has 39778
Blast hits to 22088 proteins in 1060 species: Archae - 152;
Bacteria - 6161; Metazoa - 14109; Fungi - 6144; Plants -
2156; Viruses - 601; Other Eukaryotes - 10455 (source: NCBI
BLink).		 -0.5 0.32 -0.3
62 AT2G20190 CLIP-associated protein CLIP-ASSOCIATED PROTEIN,
CLIP-associated protein		 0.49 0.32 -0.3
63 AT1G11630 Tetratricopeptide repeat (TPR)-like superfamily protein 0.49 0.32 -0.31
64 AT3G05120 alpha/beta-Hydrolases superfamily protein GA INSENSITIVE DWARF1A, GA
INSENSITIVE DWARF1A		 0.49 0.32 -0.31
65 AT2G31930 unknown protein; Has 35333 Blast hits to 34131 proteins in
2444 species: Archae - 798; Bacteria - 22429; Metazoa -
974; Fungi - 991; Plants - 531; Viruses - 0; Other
Eukaryotes - 9610 (source: NCBI BLink).		 0.49 0.3 -0.3
66 AT5G07740 actin binding -0.49 0.32 -0.32
67 AT1G60180 pseudogene of F-box family protein 0.49 0.31 -0.29
68 AT5G67390 unknown protein; BEST Arabidopsis thaliana protein match
is: Plant protein of unknown function (DUF863)
(TAIR:AT1G69360.1); Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.49 0.31 -0.34
69 AT5G65490 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: SGT1
(InterPro:IPR010770); Has 1807 Blast hits to 1807 proteins
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes -
339 (source: NCBI BLink).		 0.49 0.32 -0.31
70 AT5G22875 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to
17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink).		 -0.49 0.31 -0.31
71 AT5G04030 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: egg cell; Has 1807 Blast
hits to 1807 proteins in 277 species: Archae - 0; Bacteria
- 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 -0.48 0.31 -0.34
72 AT2G30290 VACUOLAR SORTING RECEPTOR 2 AtVSR2, binding protein of 80 kDa
1;2, VACUOLAR SORTING RECEPTOR
1;2, VACUOLAR SORTING RECEPTOR 2		 -0.48 0.33 -0.29
73 AT2G42270 U5 small nuclear ribonucleoprotein helicase -0.48 0.3 -0.33
74 AT2G26460 RED family protein SUPPRESSORS OF MEC-8 AND UNC-52 2 -0.48 0.33 -0.31
75 AT2G38300 myb-like HTH transcriptional regulator family protein -0.48 0.3 -0.31
76 AT5G48780 disease resistance protein (TIR-NBS class) 0.48 0.32 -0.34
77 AT5G25950 Protein of Unknown Function (DUF239) -0.47 0.31 -0.32
78 AT2G13680 callose synthase 5 ARABIDOPSIS THALIANA GLUCAN
SYNTHASE-LIKE 2, callose synthase
5, GLUCAN SYNTHASE-LIKE 2		 0.47 0.31 -0.32
79 AT5G01400 HEAT repeat-containing protein ENHANCED SILENCING PHENOTYPE 4 -0.47 0.3 -0.32
80 AT4G11020 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; LOCATED IN:
cellular_component unknown; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G23870.1); Has
1807 Blast hits to 1807 proteins in 277 species: Archae -
0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).		 0.47 0.31 -0.3
81 AT2G29040 Exostosin family protein 0.47 0.34 -0.31
82 AT3G57320 unknown protein; Has 30 Blast hits to 30 proteins in 13
species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0;
Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.47 0.33 -0.3
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
83 C0088 FAD - FAD cytokinins degradation,
lysine degradation II,
valine degradation I,
isoleucine degradation I,
flavin biosynthesis I (bacteria and plants) 		0.71 0.44 -0.44 C0088
84 C0261 UDP-glucose - UDP-D-glucose quercetin glucoside biosynthesis (Arabidopsis),
abscisic acid glucose ester biosynthesis,
anthocyanin biosynthesis (delphinidin 3-O-glucoside),
UDP-glucose biosynthesis (from sucrose),
2,4,6-trinitrotoluene degradation,
galactose degradation I (Leloir pathway),
cytokinins-O-glucoside biosynthesis,
trehalose biosynthesis I,
dolichyl-diphosphooligosaccharide biosynthesis,
phenolic malonylglucosides biosynthesis,
callose biosynthesis,
superpathway of anthocyanin biosynthesis (from cyanidin and cyanidin 3-O-glucoside),
glucosinolate biosynthesis from hexahomomethionine,
coniferin metabolism,
glucosinolate biosynthesis from phenylalanine,
xyloglucan biosynthesis,
glucosinolate biosynthesis from pentahomomethionine,
anthocyanin biosynthesis (pelargonidin 3-O-glucoside, cyanidin 3-O-glucoside),
glucosinolate biosynthesis from dihomomethionine,
cellulose biosynthesis,
sinapate ester biosynthesis,
superpathway of IAA conjugate biosynthesis,
salicylate glucosides biosynthesis IV,
sucrose biosynthesis I,
glucosinolate biosynthesis from trihomomethionine,
tetrahydrofolate biosynthesis II,
sucrose degradation III,
UDP-D-xylose and UDP-D-glucuronate biosynthesis,
coumarin biosynthesis (via 2-coumarate),
superpathway of sucrose and starch metabolism I (non-photosynthetic tissue),
monolignol glucosides biosynthesis,
glucosinolate biosynthesis from homomethionine,
kaempferol glucoside biosynthesis (Arabidopsis),
salicylate glucosides biosynthesis III,
cytokinins 7-N-glucoside biosynthesis,
galactose degradation III,
cytokinins 9-N-glucoside biosynthesis,
glucosinolate biosynthesis from tryptophan,
UDP-galactose biosynthesis,
salicylate glucosides biosynthesis II,
stachyose degradation,
superpathway of sucrose and starch metabolism II (photosynthetic tissue),
UDP-glucose biosynthesis (from glucose 6-phosphate),
sphingolipid biosynthesis (plants),
glucosinolate biosynthesis from tetrahomomethionine,
galactose degradation II,
UDP-L-rhamnose biosynthesis 		0.69 0.46 -0.43 C0261
85 C0186 NAD - NAD+ ammonia assimilation cycle II,
aspartate degradation II,
adenosine nucleotides degradation I,
plant sterol biosynthesis II,
UDP-D-xylose and UDP-D-glucuronate biosynthesis,
NAD biosynthesis I (from aspartate),
ethanol degradation IV (peroxisomal),
abscisic acid biosynthesis,
palmitate biosynthesis II (bacteria and plants),
zeaxanthin biosynthesis,
sucrose degradation to ethanol and lactate (anaerobic),
glutamate degradation IV,
stearate biosynthesis II (plants),
guanosine nucleotides degradation II,
glutamate degradation I,
mannitol degradation II,
glycerol-3-phosphate shuttle,
2-ketoglutarate dehydrogenase complex,
arginine degradation I (arginase pathway),
aerobic respiration (alternative oxidase pathway),
branched-chain alpha-keto acid dehydrogenase complex,
4-aminobutyrate degradation IV,
glycolysis I,
glycine cleavage complex,
lysine degradation II,
fatty acid beta-oxidation II (core pathway),
nitrate reduction II (assimilatory),
TCA cycle variation V (plant),
leucine degradation I,
thiamine biosynthesis II,
acetaldehyde biosynthesis I,
sorbitol degradation I,
glutamine biosynthesis III,
aerobic respiration (cytochrome c),
ethanol degradation I,
ascorbate biosynthesis I (L-galactose pathway),
glycolysis IV (plant cytosol),
benzoate biosynthesis II (CoA-independent, non-beta-oxidative),
siroheme biosynthesis,
TCA cycle variation III (eukaryotic),
isoleucine degradation I,
pyridine nucleotide cycling (plants),
tyrosine biosynthesis I,
gluconeogenesis I,
glycine betaine biosynthesis III (plants),
traumatin and (Z)-3-hexen-1-yl acetate biosynthesis,
NAD/NADH phosphorylation and dephosphorylation,
guanosine nucleotides degradation I,
purine nucleotides de novo biosynthesis II,
acetyl-CoA biosynthesis (from pyruvate),
serine biosynthesis,
photorespiration,
histidine biosynthesis,
glyoxylate cycle,
jasmonic acid biosynthesis,
alanine degradation II (to D-lactate),
a ubiquinone + NADH + H+ -> a ubiquinol + NAD+,
putrescine degradation IV,
brassinosteroid biosynthesis III,
fatty acid elongation -- saturated,
pyruvate fermentation to ethanol II,
beta-alanine biosynthesis II,
4-hydroxybenzoate biosynthesis V,
plant sterol biosynthesis,
urate biosynthesis/inosine 5'-phosphate degradation,
phenylalanine degradation III,
glutamate biosynthesis IV,
leucine biosynthesis,
fatty acid alpha-oxidation,
a ubiquinone + NADH + H+ -> NAD+ + a ubiquinol,
Fe(III)-reduction and Fe(II) transport,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
phenylethanol biosynthesis,
pyruvate fermentation to lactate,
superpathway of glyoxylate cycle and fatty acid degradation,
fatty acid omega-oxidation,
galactose degradation III,
ethanol degradation II (cytosol),
sucrose biosynthesis I,
valine degradation I,
folate transformations II 		0.67 0.44 -0.43 C0186
86 C0262 UDP-glucuronic acid - UDP-D-glucuronate xylan biosynthesis,
UDP-D-glucuronate biosynthesis (from myo-inositol),
UDP-D-galacturonate biosynthesis I (from UDP-D-glucuronate),
UDP-D-apiose biosynthesis (from UDP-D-glucuronate),
galactose degradation III,
UDP-D-xylose and UDP-D-glucuronate biosynthesis 		0.64 0.44 -0.45 C0262
87 C0062 Betain - - - 0.56 0.34 -0.33
88 C0116 Hydroxylamine - Hydroxylamine - -0.54 0.48 -0.48 C0116