AT1G16870 : -
Query Information
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AGICode AT1G16870
Description mitochondrial 28S ribosomal protein S29-related
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT1G16870 mitochondrial 28S ribosomal protein S29-related 1 0.33 -0.3
2 AT2G42710 Ribosomal protein L1p/L10e family 0.87 0.33 -0.31
3 AT1G14980 chaperonin 10 chaperonin 10 0.84 0.32 -0.34
4 AT3G11410 protein phosphatase 2CA AHG3, ARABIDOPSIS THALIANA PROTEIN
PHOSPHATASE 2CA, protein
phosphatase 2CA		 -0.84 0.32 -0.3
5 AT2G40330 PYR1-like 6 PYR1-like 6, regulatory components
of ABA receptor 9		 0.83 0.3 -0.31
6 AT5G14040 phosphate transporter 3;1 phosphate transporter 3;1 0.83 0.33 -0.34
7 AT1G51140 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 -0.83 0.32 -0.33
8 AT1G66070 Translation initiation factor eIF3 subunit 0.82 0.32 -0.32
9 AT5G35620 Eukaryotic initiation factor 4E protein EUKARYOTIC INITIATION FACTOR
(ISO)4E, EUKARYOTIC TRANSLATION
INITATION FACTOR 4E2, eukaryotic
translation Initiation Factor
isoform 4E, LSP, LOSS OF
SUSCEPTIBILITY TO POTYVIRUS 1		 0.82 0.3 -0.31
10 AT1G79520 Cation efflux family protein -0.82 0.32 -0.32
11 AT5G41520 RNA binding Plectin/S10 domain-containing protein 0.82 0.33 -0.35
12 AT3G07630 arogenate dehydratase 2 arogenate dehydratase 2,
Arabidopsis thaliana arogenate
dehydratase 2		 0.82 0.32 -0.32
13 AT3G62940 Cysteine proteinases superfamily protein 0.82 0.33 -0.3
14 AT3G11710 lysyl-tRNA synthetase 1 lysyl-tRNA synthetase 1 0.81 0.33 -0.32
15 AT2G21290 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 63 Blast hits to 63 proteins
in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 0.81 0.32 -0.33
16 AT2G38310 PYR1-like 4 PYR1-like 4, regulatory components
of ABA receptor 10		 0.81 0.29 -0.32
17 AT1G61740 Sulfite exporter TauE/SafE family protein 0.81 0.32 -0.32
18 AT1G26740 Ribosomal L32p protein family 0.81 0.31 -0.31
19 AT4G20020 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G44780.1); Has 28928 Blast
hits to 16023 proteins in 1033 species: Archae - 4;
Bacteria - 4155; Metazoa - 15463; Fungi - 2938; Plants -
3091; Viruses - 205; Other Eukaryotes - 3072 (source: NCBI
BLink).		 0.81 0.31 -0.32
20 AT1G27390 translocase outer membrane 20-2 translocase outer membrane 20-2 0.8 0.32 -0.3
21 AT1G76160 SKU5 similar 5 SKU5 similar 5 0.8 0.34 -0.32
22 AT1G27310 nuclear transport factor 2A nuclear transport factor 2A 0.8 0.33 -0.33
23 AT5G23900 Ribosomal protein L13e family protein 0.8 0.33 -0.34
24 AT1G49410 translocase of the outer mitochondrial membrane 6 translocase of the outer
mitochondrial membrane 6		 0.8 0.3 -0.32
25 AT3G06930 protein arginine methyltransferase 4B ARABIDOPSIS THALIANA PROTEIN
ARGININE METHYLTRANSFERASE 4B,
protein arginine methyltransferase
4B		 0.8 0.32 -0.3
26 AT2G19480 nucleosome assembly protein 1;2 nucleosome assembly protein 1;2,
NUCLEOSOME/CHROMATIN ASSEMBLY
FACTOR GROUP A 02,
NUCLEOSOME/CHROMATIN ASSEMBLY
FACTOR GROUP A 2		 0.8 0.34 -0.31
27 AT1G07140 Pleckstrin homology (PH) domain superfamily protein SIRANBP 0.79 0.31 -0.32
28 AT5G11340 Acyl-CoA N-acyltransferases (NAT) superfamily protein 0.79 0.34 -0.32
29 AT5G19300 CONTAINS InterPro DOMAIN/s: Nucleic acid-binding,
OB-fold-like (InterPro:IPR016027), Protein of unknown
function DUF171 (InterPro:IPR003750); Has 3649 Blast hits
to 1964 proteins in 291 species: Archae - 113; Bacteria -
121; Metazoa - 1082; Fungi - 399; Plants - 227; Viruses -
4; Other Eukaryotes - 1703 (source: NCBI BLink).		 0.79 0.3 -0.31
30 AT3G61890 homeobox 12 homeobox 12, ARABIDOPSIS THALIANA
HOMEOBOX 12, homeobox 12		 -0.79 0.32 -0.28
31 AT5G14030 translocon-associated protein beta (TRAPB) family protein 0.79 0.31 -0.33
32 AT3G01800 Ribosome recycling factor 0.79 0.31 -0.34
33 AT3G03600 ribosomal protein S2 ribosomal protein S2 0.79 0.32 -0.31
34 AT4G19410 Pectinacetylesterase family protein 0.79 0.3 -0.33
35 AT1G31817 Ribosomal L18p/L5e family protein NUCLEAR FUSION DEFECTIVE 3 0.79 0.34 -0.33
36 AT3G49100 Signal recognition particle, SRP9/SRP14 subunit 0.78 0.33 -0.32
37 AT1G14810 semialdehyde dehydrogenase family protein 0.78 0.32 -0.3
38 AT5G02050 Mitochondrial glycoprotein family protein 0.78 0.34 -0.3
39 AT1G61770 Chaperone DnaJ-domain superfamily protein 0.78 0.32 -0.33
40 AT5G40770 prohibitin 3 prohibitin 3, prohibitin 3 0.78 0.31 -0.32
41 AT4G37660 Ribosomal protein L12/ ATP-dependent Clp protease adaptor
protein ClpS family protein		 0.78 0.32 -0.31
42 AT5G23140 nuclear-encoded CLP protease P7 CLPP2, nuclear-encoded CLP
protease P7		 0.77 0.31 -0.32
43 AT3G15640 Rubredoxin-like superfamily protein 0.77 0.33 -0.33
44 AT1G03150 Acyl-CoA N-acyltransferases (NAT) superfamily protein 0.77 0.34 -0.33
45 AT2G33845 Nucleic acid-binding, OB-fold-like protein 0.77 0.31 -0.33
46 AT5G05440 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 PYRABACTIN RESISTANCE 1-LIKE 5,
regulatory component of ABA
receptor 8		 0.77 0.32 -0.33
47 AT1G62380 ACC oxidase 2 ACC oxidase 2, ATACO2 0.77 0.33 -0.3
48 AT1G28510 Optic atrophy 3 protein (OPA3) 0.77 0.3 -0.3
49 AT2G21160 Translocon-associated protein (TRAP), alpha subunit 0.77 0.34 -0.32
50 AT5G23250 Succinyl-CoA ligase, alpha subunit 0.77 0.31 -0.33
51 AT2G46680 homeobox 7 homeobox 7, ARABIDOPSIS THALIANA
HOMEOBOX 7, homeobox 7		 -0.77 0.29 -0.31
52 AT3G25120 Mitochondrial import inner membrane translocase subunit
Tim17/Tim22/Tim23 family protein		 0.76 0.31 -0.32
53 AT2G29530 Tim10/DDP family zinc finger protein TIM10 0.76 0.31 -0.31
54 AT5G05450 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.76 0.33 -0.31
55 AT4G35490 mitochondrial ribosomal protein L11 mitochondrial ribosomal protein
L11		 0.76 0.31 -0.31
56 AT5G56940 Ribosomal protein S16 family protein 0.76 0.33 -0.3
57 AT2G43640 Signal recognition particle, SRP9/SRP14 subunit 0.76 0.3 -0.29
58 AT1G43690 ubiquitin interaction motif-containing protein 0.76 0.32 -0.31
59 AT3G19130 RNA-binding protein 47B RNA-binding protein 47B,
RNA-binding protein 47B		 0.76 0.32 -0.34
60 AT5G65430 general regulatory factor 8 14-3-3 PROTEIN G-BOX FACTOR14
KAPPA, GF14 KAPPA, general
regulatory factor 8		 0.76 0.32 -0.32
61 AT5G59160 type one serine/threonine protein phosphatase 2 PROTOPORPHYRINOGEN OXIDASE, type
one serine/threonine protein
phosphatase 2		 0.76 0.32 -0.3
62 AT5G54900 RNA-binding protein 45A RNA-binding protein 45A,
RNA-binding protein 45A		 0.76 0.29 -0.31
63 AT4G21410 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 cysteine-rich RLK (RECEPTOR-like
protein kinase) 29		 0.76 0.31 -0.3
64 AT4G02630 Protein kinase superfamily protein -0.76 0.31 -0.33
65 AT1G15810 S15/NS1, RNA-binding protein 0.75 0.33 -0.3
66 AT3G53580 diaminopimelate epimerase family protein 0.75 0.3 -0.33
67 AT1G16000 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G80890.1); Has 41 Blast hits
to 40 proteins in 10 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.75 0.31 -0.32
68 AT1G07430 highly ABA-induced PP2C gene 2 highly ABA-induced PP2C gene 2 -0.75 0.3 -0.31
69 AT3G18510 unknown protein; Has 15 Blast hits to 15 proteins in 9
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.75 0.32 -0.33
70 AT4G26210 Mitochondrial ATP synthase subunit G protein 0.75 0.32 -0.32
71 AT4G02230 Ribosomal protein L19e family protein 0.75 0.3 -0.33
72 AT2G01970 Endomembrane protein 70 protein family 0.75 0.33 -0.32
73 AT2G45790 phosphomannomutase PHOSPHOMANNOMUTASE,
phosphomannomutase		 0.75 0.3 -0.3
74 AT3G17465 ribosomal protein L3 plastid ribosomal protein L3 plastid 0.75 0.32 -0.33
75 AT4G22720 Actin-like ATPase superfamily protein 0.75 0.3 -0.31
76 AT1G05810 RAB GTPase homolog A5E ARA, ARA-1, ATRAB11D, ARABIDOPSIS
THALIANA RAB GTPASE HOMOLOG A5E,
RAB GTPase homolog A5E		 0.75 0.3 -0.33
77 AT3G52930 Aldolase superfamily protein 0.74 0.32 -0.3
78 AT5G62490 HVA22 homologue B ARABIDOPSIS THALIANA HVA22
HOMOLOGUE B, HVA22 homologue B		 -0.74 0.31 -0.34
79 AT3G48570 secE/sec61-gamma protein transport protein 0.74 0.31 -0.33
80 AT4G36420 Ribosomal protein L12 family protein 0.74 0.33 -0.33
81 AT3G15790 methyl-CPG-binding domain 11 ATMBD11, methyl-CPG-binding domain
11		 -0.74 0.32 -0.35
82 AT1G53760 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion, plasma membrane, plastid, membrane;
EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF2343 (InterPro:IPR018786); Has 171
Blast hits to 171 proteins in 90 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 127; Plants - 41;
Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).		 0.74 0.32 -0.33
83 AT2G32800 protein kinase family protein AP4.3A -0.74 0.3 -0.3
84 AT5G15190 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED
DURING: LP.04 four leaves visible, 4 anthesis, petal
differentiation and expansion stage, E expanded cotyledon
stage, D bilateral stage; Has 7 Blast hits to 7 proteins in
3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.74 0.34 -0.33
85 AT5G22290 NAC domain containing protein 89 NAC domain containing protein 89,
fructose-sensing quantitative
trait locus 6, NAC domain
containing protein 89		 -0.74 0.3 -0.33
86 AT1G72750 translocase inner membrane subunit 23-2 translocase inner membrane subunit
23-2, translocase inner membrane
subunit 23-2		 0.74 0.32 -0.33
87 AT2G20585 nuclear fusion defective 6 NUCLEAR FUSION DEFECTIVE 6 0.74 0.31 -0.31
88 AT2G06000 Pentatricopeptide repeat (PPR) superfamily protein 0.74 0.32 -0.3
89 AT2G35680 Phosphotyrosine protein phosphatases superfamily protein -0.74 0.31 -0.31
90 AT3G01790 Ribosomal protein L13 family protein 0.74 0.3 -0.31
91 AT2G43140 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 0.73 0.3 -0.31
92 AT3G04230 Ribosomal protein S5 domain 2-like superfamily protein 0.73 0.32 -0.3
93 AT3G20000 translocase of the outer mitochondrial membrane 40 translocase of the outer
mitochondrial membrane 40		 0.73 0.3 -0.33
94 AT5G13110 glucose-6-phosphate dehydrogenase 2 glucose-6-phosphate dehydrogenase
2		 0.73 0.35 -0.33
95 AT1G69270 receptor-like protein kinase 1 receptor-like protein kinase 1 -0.73 0.3 -0.32
96 AT5G19180 E1 C-terminal related 1 E1 C-terminal related 1 0.73 0.31 -0.32
97 AT5G62090 SEUSS-like 2 SEUSS-like 2 -0.73 0.31 -0.33
98 AT1G67310 Calmodulin-binding transcription activator protein with
CG-1 and Ankyrin domains		 -0.73 0.3 -0.29
99 AT2G18030 Peptide methionine sulfoxide reductase family protein 0.73 0.32 -0.31
100 AT3G16480 mitochondrial processing peptidase alpha subunit mitochondrial processing peptidase
alpha subunit		 0.73 0.34 -0.3
101 AT5G56280 COP9 signalosome subunit 6A COP9 signalosome subunit 6A 0.73 0.32 -0.31
102 AT5G12980 Cell differentiation, Rcd1-like protein 0.73 0.31 -0.3
103 AT5G01300 PEBP (phosphatidylethanolamine-binding protein) family
protein		 -0.72 0.31 -0.3
104 AT5G57610 Protein kinase superfamily protein with
octicosapeptide/Phox/Bem1p domain		 -0.72 0.32 -0.32
105 AT5G45630 Protein of unknown function, DUF584 -0.71 0.31 -0.31
106 AT5G12140 cystatin-1 cystatin-1, cystatin-1 -0.71 0.3 -0.32
107 AT1G70420 Protein of unknown function (DUF1645) -0.71 0.32 -0.31
108 AT2G35060 K+ uptake permease 11 K+ uptake permease 11 -0.71 0.32 -0.31
109 AT5G01520 RING/U-box superfamily protein ABA Insensitive RING Protein 2,
AtAIRP2		 -0.71 0.31 -0.32
110 AT5G45310 unknown protein; LOCATED IN: endomembrane system; EXPRESSED
IN: stem, inflorescence meristem, root, leaf; EXPRESSED
DURING: LP.04 four leaves visible; Has 30201 Blast hits to
17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink).		 -0.71 0.31 -0.31
111 AT2G41190 Transmembrane amino acid transporter family protein -0.7 0.3 -0.31
112 AT5G57040 Lactoylglutathione lyase / glyoxalase I family protein -0.7 0.33 -0.3
113 AT2G19810 CCCH-type zinc finger family protein AtOZF1, Oxidation-related Zinc
Finger 1		 -0.69 0.31 -0.3
114 AT4G34000 abscisic acid responsive elements-binding factor 3 abscisic acid responsive
elements-binding factor 3, AtABF3,
DC3 PROMOTER-BINDING FACTOR 5		 -0.69 0.31 -0.32
115 AT3G05640 Protein phosphatase 2C family protein -0.69 0.33 -0.31
116 AT5G50360 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G48510.1); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 -0.68 0.32 -0.31
117 AT3G15780 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G52550.1); Has 20 Blast hits
to 20 proteins in 5 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.68 0.32 -0.3
118 AT5G62470 myb domain protein 96 MYB DOMAIN PROTEIN 96, myb domain
protein 96, MYBCOV1		 -0.68 0.34 -0.29
119 AT1G61660 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 -0.68 0.31 -0.32
120 AT1G08040 Protein of unknown function (DUF707) -0.68 0.31 -0.33
121 AT1G67530 ARM repeat superfamily protein -0.67 0.31 -0.32
122 AT3G54390 sequence-specific DNA binding transcription factors -0.67 0.32 -0.31
123 AT4G13810 receptor like protein 47 receptor like protein 47, receptor
like protein 47		 -0.67 0.3 -0.33
124 AT3G07360 plant U-box 9 ARABIDOPSIS THALIANA PLANT U-BOX
9, plant U-box 9		 -0.66 0.3 -0.33
125 AT1G60190 ARM repeat superfamily protein AtPUB19, plant U-box 19 -0.66 0.32 -0.33
126 AT5G62020 heat shock transcription factor B2A ARABIDOPSIS THALIANA HEAT SHOCK
TRANSCRIPTION FACTOR B2A, heat
shock transcription factor B2A		 -0.66 0.33 -0.31
127 AT5G62000 auxin response factor 2 ARF1-BINDING PROTEIN, auxin
response factor 2, HLS1
SUPPRESSOR, ORESARA 14		 -0.66 0.31 -0.33
128 AT3G45900 Ribonuclease P protein subunit P38-related -0.65 0.32 -0.32
129 AT4G18270 translocase 11 ARABIDOPSIS THALIANA TRANSLOCASE
11, translocase 11		 -0.65 0.31 -0.31
130 AT5G07050 nodulin MtN21 /EamA-like transporter family protein -0.64 0.32 -0.3
131 AT4G08980 F-BOX WITH WD-40 2 F-BOX WITH WD-40 2 -0.64 0.3 -0.32
132 AT1G68020 UDP-Glycosyltransferase / trehalose-phosphatase family
protein		 ATTPS6, TREHALOSE -6-PHOSPHATASE
SYNTHASE S6		 -0.64 0.36 -0.32
133 AT5G01880 RING/U-box superfamily protein -0.64 0.35 -0.33
134 AT5G37500 gated outwardly-rectifying K+ channel gated outwardly-rectifying K+
channel		 -0.63 0.31 -0.31
135 AT2G46180 golgin candidate 4 golgin candidate 4 -0.63 0.33 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
136 C0057 Anthranilic acid - Anthranilate tryptophan biosynthesis,
benzoylanthranilate biosynthesis 		-0.83 0.45 -0.47 C0057
137 C0123 Isoleucine D,L-Isoleucine L-Isoleucine tRNA charging,
isoleucine biosynthesis I (from threonine),
jasmonoyl-amino acid conjugates biosynthesis I,
isoleucine degradation I 		-0.82 0.43 -0.47 C0123
138 C0109 Guanine - Guanine guanine and guanosine salvage II,
guanosine nucleotides degradation II 		-0.78 0.43 -0.44 C0109
139 C0266 Xylose D-Xylose D-Xylose xylose degradation I -0.77 0.49 -0.45 C0266
140 C0225 Raffinose D-(+)-Raffinose Raffinose ajugose biosynthesis II (galactinol-independent),
stachyose biosynthesis,
stachyose degradation 		-0.76 0.44 -0.42 C0225
141 C0056 AMP - AMP PRPP biosynthesis I,
fatty acid biosynthesis (plant mitochondria),
adenine and adenosine salvage VI,
biotin-carboxyl carrier protein assembly,
molybdenum cofactor biosynthesis II (eukaryotes),
gluconeogenesis I,
adenine and adenosine salvage II,
asparagine biosynthesis I,
L-glutamine biosynthesis II (tRNA-dependent),
trans-cinnamoyl-CoA biosynthesis,
IAA degradation V,
ethanol degradation II (cytosol),
arginine biosynthesis I,
IAA degradation IV,
fatty acid activation,
selenate reduction,
IAA biosynthesis VII,
4-hydroxybenzoate biosynthesis V,
tetrapyrrole biosynthesis I,
flavonoid biosynthesis,
indole-3-acetyl-amino acid biosynthesis,
glutamine biosynthesis III,
ethanol degradation IV (peroxisomal),
glycolysis I,
asparagine biosynthesis III (tRNA-dependent),
jasmonoyl-amino acid conjugates biosynthesis I,
molybdenum cofactor biosynthesis,
pyridine nucleotide cycling (plants),
scopoletin biosynthesis,
jasmonic acid biosynthesis,
adenosine nucleotides degradation I,
fatty acid beta-oxidation II (core pathway),
simple coumarins biosynthesis,
sulfate reduction II (assimilatory),
pantothenate biosynthesis,
sporopollenin precursor biosynthesis,
urea cycle,
thiamine biosynthesis II,
starch degradation II,
NAD biosynthesis I (from aspartate),
citrulline-nitric oxide cycle,
beta-alanine biosynthesis II,
arginine biosynthesis II (acetyl cycle),
suberin biosynthesis,
linoleate biosynthesis I (plants),
trans-zeatin biosynthesis,
tetrahydrofolate biosynthesis II,
purine nucleotides de novo biosynthesis II,
phenylpropanoid biosynthesis,
6-hydroxymethyl-dihydropterin diphosphate biosynthesis I,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
tRNA charging 		-0.69 0.46 -0.46 C0056
142 C0216 Proline L-Proline L-Proline proline degradation II,
arginine degradation VI (arginase 2 pathway),
L-Ndelta-acetylornithine biosynthesis,
tRNA charging,
citrulline biosynthesis,
proline biosynthesis III 		-0.66 0.3 -0.31 C0216