AT3G12130 : -
Query Information
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AGICode AT3G12130
Description KH domain-containing protein / zinc finger (CCCH type) family protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G12130 KH domain-containing protein / zinc finger (CCCH type)
family protein		 1 0.34 -0.34
2 AT5G15640 Mitochondrial substrate carrier family protein 0.81 0.32 -0.3
3 AT5G58230 Transducin/WD40 repeat-like superfamily protein ARABIDOPSIS MULTICOPY SUPRESSOR OF
IRA1, MATERNAL EFFECT EMBRYO
ARREST 70, MULTICOPY SUPRESSOR OF
IRA1		 0.8 0.32 -0.31
4 AT1G43860 sequence-specific DNA binding transcription factors 0.8 0.31 -0.32
5 AT2G31410 unknown protein; Has 1719 Blast hits to 1091 proteins in
184 species: Archae - 5; Bacteria - 24; Metazoa - 559;
Fungi - 169; Plants - 192; Viruses - 1; Other Eukaryotes -
769 (source: NCBI BLink).		 0.8 0.28 -0.33
6 AT5G19350 RNA-binding (RRM/RBD/RNP motifs) family protein 0.8 0.32 -0.34
7 AT3G55620 Translation initiation factor IF6 eukaryotic initiation facor 6A,
embryo defective 1624		 0.78 0.3 -0.33
8 AT1G55150 DEA(D/H)-box RNA helicase family protein 0.78 0.34 -0.31
9 AT3G44110 DNAJ homologue 3 ATJ, DNAJ homologue 3, J3 0.77 0.32 -0.32
10 AT4G31080 Protein of unknown function (DUF2296) 0.77 0.33 -0.31
11 AT1G32440 plastidial pyruvate kinase 3 plastidial pyruvate kinase 3 0.76 0.33 -0.34
12 AT4G32400 Mitochondrial substrate carrier family protein ARABIDOPSIS THALIANA BRITTLE 1,
EMBRYO DEFECTIVE 104, EMBRYO
DEFECTIVE 42, SODIUM
HYPERSENSITIVE 1		 0.76 0.31 -0.32
13 AT5G05820 Nucleotide-sugar transporter family protein 0.75 0.32 -0.31
14 AT3G53520 UDP-glucuronic acid decarboxylase 1 ATUXS1, UDP-glucuronic acid
decarboxylase 1		 0.75 0.31 -0.31
15 AT5G53400 HSP20-like chaperones superfamily protein BOBBER1 0.75 0.3 -0.32
16 AT3G19630 Radical SAM superfamily protein 0.75 0.31 -0.32
17 AT5G66140 proteasome alpha subunit D2 proteasome alpha subunit D2 0.75 0.32 -0.31
18 AT2G44020 Mitochondrial transcription termination factor family
protein		 0.74 0.32 -0.32
19 AT2G25590 Plant Tudor-like protein -0.74 0.3 -0.32
20 AT4G23040 Ubiquitin-like superfamily protein 0.74 0.31 -0.29
21 AT1G31020 thioredoxin O2 thioredoxin O2, thioredoxin O2 0.74 0.31 -0.32
22 AT5G58130 RNA-binding (RRM/RBD/RNP motifs) family protein REPRESSOR OF SILENCING 3 0.74 0.31 -0.31
23 AT3G43510 transposable element gene 0.74 0.32 -0.33
24 AT1G25490 ARM repeat superfamily protein ATB BETA BETA, ENHANCED ETHYLENE
RESPONSE 1, ROOTS CURL IN NPA,
REGA		 0.74 0.33 -0.32
25 AT1G28510 Optic atrophy 3 protein (OPA3) 0.74 0.31 -0.3
26 AT4G30993 Calcineurin-like metallo-phosphoesterase superfamily
protein		 -0.74 0.31 -0.31
27 AT1G12650 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF947 (InterPro:IPR009292); Has 700 Blast
hits to 631 proteins in 192 species: Archae - 0; Bacteria -
32; Metazoa - 138; Fungi - 168; Plants - 60; Viruses - 0;
Other Eukaryotes - 302 (source: NCBI BLink).		 0.74 0.31 -0.31
28 AT5G20570 RING-box 1 RING-BOX 1, HRT1, RING-box 1,
REGULATOR OF CULLINS-1		 0.74 0.3 -0.29
29 AT4G28540 casein kinase I-like 6 casein kinase I-like 6, PAPK1 0.74 0.32 -0.32
30 AT1G20200 PAM domain (PCI/PINT associated module) protein EMBRYO DEFECTIVE 2719, HAPLESS 15 0.73 0.29 -0.32
31 AT3G07170 Sterile alpha motif (SAM) domain-containing protein 0.73 0.34 -0.3
32 AT2G18740 Small nuclear ribonucleoprotein family protein 0.73 0.33 -0.31
33 AT4G38150 Pentatricopeptide repeat (PPR) superfamily protein 0.73 0.32 -0.33
34 AT4G37190 LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 20
plant structures; EXPRESSED DURING: 13 growth stages;
CONTAINS InterPro DOMAIN/s: Beta tubulin, autoregulation
binding site (InterPro:IPR013838), Misato Segment II,
myosin-like (InterPro:IPR019605), Tubulin/FtsZ, N-terminal
(InterPro:IPR019746); Has 345 Blast hits to 341 proteins in
161 species: Archae - 0; Bacteria - 0; Metazoa - 131; Fungi
- 140; Plants - 55; Viruses - 0; Other Eukaryotes - 19
(source: NCBI BLink).		 0.72 0.32 -0.3
35 AT5G12220 las1-like family protein 0.72 0.29 -0.31
36 AT2G31360 16:0delta9 desaturase 2 16:0delta9 desaturase 2,
16:0delta9 desaturase 2		 0.72 0.32 -0.32
37 AT4G32520 serine hydroxymethyltransferase 3 SERINE HYDROXYMETHYLTRANSFERASE 3,
serine hydroxymethyltransferase 3		 0.72 0.3 -0.3
38 AT3G49720 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane, Golgi apparatus, plasma
membrane, membrane; EXPRESSED IN: 25 plant structures;
EXPRESSED DURING: 15 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G65810.1); Has 64 Blast hits to 64 proteins in 11
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.72 0.32 -0.3
39 AT3G05500 Rubber elongation factor protein (REF) 0.72 0.3 -0.32
40 AT2G25430 epsin N-terminal homology (ENTH) domain-containing protein
/ clathrin assembly protein-related		 0.72 0.31 -0.3
41 AT3G07590 Small nuclear ribonucleoprotein family protein 0.72 0.31 -0.3
42 AT4G39220 Rer1 family protein ATRER1A 0.72 0.31 -0.34
43 AT1G33230 TMPIT-like protein 0.72 0.33 -0.32
44 AT5G62290 nucleotide-sensitive chloride conductance regulator (ICln)
family protein		 0.72 0.31 -0.3
45 AT3G13672 TRAF-like superfamily protein -0.72 0.32 -0.32
46 AT4G20890 tubulin beta-9 chain tubulin beta-9 chain 0.71 0.31 -0.33
47 AT5G55610 unknown protein; LOCATED IN: mitochondrion, chloroplast,
plastid, membrane; EXPRESSED IN: 25 plant structures;
EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to
1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 0.71 0.32 -0.32
48 AT2G16500 arginine decarboxylase 1 arginine decarboxylase 1, ARGDC,
ARGDC1, SPE1		 0.71 0.33 -0.29
49 AT4G02570 cullin 1 cullin 1, AUXIN RESISTANT 6,
cullin 1		 0.71 0.32 -0.32
50 AT3G19980 flower-specific, phytochrome-associated protein phosphatase
3		 flower-specific,
phytochrome-associated protein
phosphatase 3, EMBRYO DEFECTIVE
2736, flower-specific,
phytochrome-associated protein
phosphatase 3, SERINE/THREONINE
PROTEIN PHOSPHATASE		 0.71 0.29 -0.3
51 AT2G29700 pleckstrin homologue 1 pleckstrin homologue 1, pleckstrin
homologue 1		 0.7 0.33 -0.31
52 AT1G31010 organellar single-stranded DNA binding protein 4 organellar single-stranded DNA
binding protein 4		 0.7 0.31 -0.32
53 AT1G13020 eukaryotic initiation factor 4B2 eukaryotic initiation factor 4B2 0.7 0.33 -0.33
54 AT4G26430 COP9 signalosome subunit 6B COP9 signalosome subunit 6B 0.7 0.3 -0.32
55 AT4G09570 calcium-dependent protein kinase 4 ATCPK4, calcium-dependent protein
kinase 4		 0.7 0.31 -0.31
56 AT4G22330 Alkaline phytoceramidase (aPHC) ATCES1 0.7 0.32 -0.33
57 AT1G75180 Erythronate-4-phosphate dehydrogenase family protein 0.7 0.33 -0.31
58 AT5G57460 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN: plasma
membrane, chloroplast; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; Has 166 Blast hits to
166 proteins in 41 species: Archae - 0; Bacteria - 0;
Metazoa - 112; Fungi - 4; Plants - 36; Viruses - 0; Other
Eukaryotes - 14 (source: NCBI BLink).		 0.7 0.31 -0.34
59 AT3G09840 cell division cycle 48 ATCDC48, cell division cycle 48,
CDC48A		 0.7 0.31 -0.33
60 AT5G18280 apyrase 2 apyrase 2, apyrase 2 0.7 0.34 -0.34
61 AT5G54580 RNA-binding (RRM/RBD/RNP motifs) family protein 0.7 0.35 -0.32
62 AT3G53500 RNA-binding (RRM/RBD/RNP motifs) family protein with
retrovirus zinc finger-like domain		 arginine/serine-rich zinc
knuckle-containing protein 32,
arginine/serine-rich zinc
knuckle-containing protein 32,
arginine/serine-rich zinc
knuckle-containing protein 32		 0.7 0.3 -0.31
63 AT2G25690 Protein of unknown function (DUF581) -0.69 0.31 -0.31
64 AT3G01150 polypyrimidine tract-binding protein 1 POLYPYRIMIDINE TRACT-BINDING
PROTEIN 1, polypyrimidine
tract-binding protein 1		 0.69 0.31 -0.31
65 AT3G18940 clast3-related 0.69 0.32 -0.31
66 AT5G51180 alpha/beta-Hydrolases superfamily protein 0.69 0.34 -0.33
67 AT5G62740 SPFH/Band 7/PHB domain-containing membrane-associated
protein family		 ATHIR1, AtHIR4,
HYPERSENSITIVE-INDUCED RESPONSE
PROTEIN 1, hypersensitive induced
reaction 4		 0.69 0.29 -0.3
68 AT4G31080 Protein of unknown function (DUF2296) 0.69 0.35 -0.31
69 AT4G28480 DNAJ heat shock family protein 0.69 0.3 -0.31
70 AT3G09350 Fes1A Fes1A 0.69 0.32 -0.31
71 AT1G51600 ZIM-LIKE 2 GATA TRANSCRIPTION FACTOR 28,
TIFY2A, ZIM-LIKE 2		 0.69 0.33 -0.31
72 AT1G19370 unknown protein; LOCATED IN: endoplasmic reticulum;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT1G75140.1); Has 45 Blast hits to 43
proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes -
1 (source: NCBI BLink).		 0.69 0.31 -0.31
73 AT1G72340 NagB/RpiA/CoA transferase-like superfamily protein 0.69 0.31 -0.31
74 AT2G26830 Protein kinase superfamily protein embryo defective 1187 0.69 0.29 -0.33
75 AT2G22660 Protein of unknown function (duplicated DUF1399) -0.68 0.32 -0.34
76 AT2G30500 Kinase interacting (KIP1-like) family protein -0.67 0.31 -0.3
77 AT4G34560 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G66440.1); Has 67 Blast hits
to 66 proteins in 11 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.67 0.3 -0.31
78 AT3G22490 Seed maturation protein -0.67 0.31 -0.3
79 AT4G13810 receptor like protein 47 receptor like protein 47, receptor
like protein 47		 -0.67 0.32 -0.31
80 AT3G10740 alpha-L-arabinofuranosidase 1 ALPHA-L-ARABINOFURANOSIDASE,
ALPHA-L-ARABINOFURANOSIDASE 1,
alpha-L-arabinofuranosidase 1,
ARABIDOPSIS THALIANA
ALPHA-L-ARABINOFURANOSIDASE 1		 -0.66 0.29 -0.33
81 AT1G16730 unknown protein 6 unknown protein 6 -0.65 0.31 -0.32
82 AT4G10060 Beta-glucosidase, GBA2 type family protein -0.65 0.31 -0.33
83 AT5G44310 Late embryogenesis abundant protein (LEA) family protein -0.65 0.34 -0.29
84 AT4G14180 putative recombination initiation defect 1 putative recombination initiation
defect 1, putative recombination
initiation defect 1		 -0.64 0.32 -0.31
85 AT3G17980 Calcium-dependent lipid-binding (CaLB domain) family
protein		 Arabidopsis thaliana C2 domain, C2
domain		 -0.64 0.3 -0.32
86 AT3G15940 UDP-Glycosyltransferase superfamily protein -0.64 0.31 -0.29
87 AT5G47720 Thiolase family protein -0.64 0.32 -0.32
88 AT5G10930 CBL-interacting protein kinase 5 CBL-interacting protein kinase 5,
SNF1-RELATED PROTEIN KINASE 3.24		 -0.64 0.32 -0.32
89 AT3G24040 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein		 -0.64 0.34 -0.32
90 AT5G63800 Glycosyl hydrolase family 35 protein beta-galactosidase 6,
MUCILAGE-MODIFIED 2		 -0.63 0.33 -0.3
91 AT1G54230 Winged helix-turn-helix transcription repressor DNA-binding -0.63 0.34 -0.33
92 AT3G23590 REF4-related 1 MED33A, REF4-related 1 -0.62 0.31 -0.31
93 AT1G68530 3-ketoacyl-CoA synthase 6 ECERIFERUM 6, CUTICULAR 1, G2,
3-ketoacyl-CoA synthase 6,
POLLEN-PISTIL INCOMPATIBILITY 1		 -0.62 0.29 -0.33
94 AT5G40960 Protein of unknown function (DUF 3339) -0.62 0.32 -0.31
95 AT5G49120 Protein of unknown function (DUF581) -0.62 0.31 -0.31
96 AT3G03620 MATE efflux family protein -0.61 0.3 -0.32
97 AT3G51590 lipid transfer protein 12 lipid transfer protein 12 -0.61 0.31 -0.33
98 AT3G60180 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.61 0.32 -0.33
99 AT5G22460 alpha/beta-Hydrolases superfamily protein -0.6 0.29 -0.31
100 AT5G42370 Calcineurin-like metallo-phosphoesterase superfamily
protein		 -0.6 0.31 -0.32
101 AT1G15320 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: flower; EXPRESSED
DURING: petal differentiation and expansion stage; Has 62
Blast hits to 62 proteins in 17 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 -0.59 0.33 -0.31
102 AT1G74300 alpha/beta-Hydrolases superfamily protein -0.59 0.29 -0.31
103 AT1G69490 NAC-like, activated by AP3/PI Arabidopsis NAC domain containing
protein 29, NAC-LIKE, ACTIVATED BY
AP3/PI, NAC-like, activated by
AP3/PI		 -0.59 0.32 -0.33
104 AT1G48470 glutamine synthetase 1;5 glutamine synthetase 1;5 -0.58 0.31 -0.33
105 AT2G34840 Coatomer epsilon subunit -0.58 0.32 -0.32
106 AT3G04890 Uncharacterized conserved protein (DUF2358) -0.57 0.31 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
107 C0022 1,4-Butanediamine - Putrescine spermine and spermidine degradation III,
putrescine degradation IV,
superpathway of polyamine biosynthesis,
putrescine biosynthesis II,
spermidine biosynthesis I,
putrescine biosynthesis I 		-0.59 0.32 -0.31 C0022