AT3G22490 : -
Query Information
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AGICode AT3G22490
Description Seed maturation protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G22490 Seed maturation protein 1 0.31 -0.32
2 AT1G22690 Gibberellin-regulated family protein -0.73 0.31 -0.32
3 AT5G01300 PEBP (phosphatidylethanolamine-binding protein) family
protein		 0.73 0.31 -0.32
4 AT5G57500 Galactosyltransferase family protein -0.73 0.33 -0.31
5 AT1G08930 Major facilitator superfamily protein EARLY RESPONSE TO DEHYDRATION 6 -0.71 0.32 -0.31
6 AT1G49240 actin 8 actin 8, FRIZZY AND KINKED SHOOTS -0.71 0.3 -0.32
7 AT1G04340 HR-like lesion-inducing protein-related -0.7 0.32 -0.34
8 AT5G51490 Plant invertase/pectin methylesterase inhibitor superfamily -0.7 0.3 -0.32
9 AT1G72770 homology to ABI1 HYPERSENSITIVE TO ABA1 0.7 0.31 -0.31
10 AT5G15190 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED
DURING: LP.04 four leaves visible, 4 anthesis, petal
differentiation and expansion stage, E expanded cotyledon
stage, D bilateral stage; Has 7 Blast hits to 7 proteins in
3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.7 0.31 -0.34
11 AT2G48060 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: shoot, sperm cell;
CONTAINS InterPro DOMAIN/s: Protein of unknown function
DUF3595 (InterPro:IPR021999); Has 533 Blast hits to 341
proteins in 95 species: Archae - 2; Bacteria - 15; Metazoa
- 318; Fungi - 0; Plants - 93; Viruses - 0; Other
Eukaryotes - 105 (source: NCBI BLink).		 0.69 0.32 -0.31
12 AT2G43880 Pectin lyase-like superfamily protein -0.69 0.3 -0.33
13 AT1G05810 RAB GTPase homolog A5E ARA, ARA-1, ATRAB11D, ARABIDOPSIS
THALIANA RAB GTPASE HOMOLOG A5E,
RAB GTPase homolog A5E		 -0.69 0.31 -0.31
14 AT4G28540 casein kinase I-like 6 casein kinase I-like 6, PAPK1 -0.69 0.29 -0.31
15 AT1G31817 Ribosomal L18p/L5e family protein NUCLEAR FUSION DEFECTIVE 3 -0.69 0.31 -0.29
16 AT5G05440 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 PYRABACTIN RESISTANCE 1-LIKE 5,
regulatory component of ABA
receptor 8		 -0.68 0.32 -0.31
17 AT1G64090 Reticulan like protein B3 Reticulan like protein B3 -0.68 0.32 -0.32
18 AT3G12960 unknown protein; Has 44 Blast hits to 44 proteins in 14
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 44; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.68 0.34 -0.32
19 AT5G52300 CAP160 protein LOW-TEMPERATURE-INDUCED 65,
RESPONSIVE TO DESSICATION 29B		 0.68 0.31 -0.33
20 AT1G64070 Disease resistance protein (TIR-NBS-LRR class) family RESISTANCE TO LEPTOSPHAERIA
MACULANS 1		 -0.68 0.33 -0.28
21 AT3G06510 Glycosyl hydrolase superfamily protein SENSITIVE TO FREEZING 2, SENSITIVE
TO FREEZING 2		 0.67 0.3 -0.3
22 AT1G52060 Mannose-binding lectin superfamily protein -0.67 0.34 -0.32
23 AT2G25450 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 0.67 0.33 -0.33
24 AT2G25430 epsin N-terminal homology (ENTH) domain-containing protein
/ clathrin assembly protein-related		 -0.67 0.31 -0.31
25 AT5G58030 Transport protein particle (TRAPP) component -0.67 0.33 -0.32
26 AT3G57540 Remorin family protein 0.67 0.32 -0.32
27 AT1G28510 Optic atrophy 3 protein (OPA3) -0.67 0.31 -0.31
28 AT5G43840 heat shock transcription factor A6A heat shock transcription factor
A6A, heat shock transcription
factor A6A		 0.67 0.3 -0.3
29 AT1G13920 Remorin family protein 0.67 0.33 -0.3
30 AT4G13810 receptor like protein 47 receptor like protein 47, receptor
like protein 47		 0.67 0.3 -0.31
31 AT3G12130 KH domain-containing protein / zinc finger (CCCH type)
family protein		 -0.67 0.34 -0.32
32 AT5G62490 HVA22 homologue B ARABIDOPSIS THALIANA HVA22
HOMOLOGUE B, HVA22 homologue B		 0.66 0.31 -0.32
33 AT5G49990 Xanthine/uracil permease family protein 0.66 0.32 -0.32
34 AT5G02910 F-box/RNI-like superfamily protein -0.66 0.34 -0.32
35 AT1G62540 flavin-monooxygenase glucosinolate S-oxygenase 2 flavin-monooxygenase glucosinolate
S-oxygenase 2		 0.66 0.32 -0.33
36 AT5G04270 DHHC-type zinc finger family protein -0.66 0.31 -0.32
37 AT2G11140 transposable element gene -0.66 0.34 -0.31
38 AT5G24080 Protein kinase superfamily protein 0.66 0.29 -0.3
39 AT3G03620 MATE efflux family protein 0.65 0.32 -0.28
40 AT1G03070 Bax inhibitor-1 family protein 0.65 0.31 -0.31
41 AT2G40170 Stress induced protein ARABIDOPSIS EARLY
METHIONINE-LABELLED 6, EARLY
METHIONINE-LABELLED 6, LATE
EMBRYOGENESIS ABUNDANT 6		 0.65 0.32 -0.34
42 AT5G26250 Major facilitator superfamily protein -0.65 0.32 -0.29
43 AT4G31080 Protein of unknown function (DUF2296) -0.65 0.32 -0.32
44 AT5G53710 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 8 plant structures;
EXPRESSED DURING: 4 anthesis, C globular stage, petal
differentiation and expansion stage; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink).		 0.65 0.31 -0.33
45 AT1G04750 vesicle-associated membrane protein 721 AT VAMP7B, ATVAMP721,
vesicle-associated membrane
protein 721, VESICLE-ASSOCIATED
MEMBRANE PROTEIN 7B		 -0.65 0.32 -0.29
46 AT3G45420 Concanavalin A-like lectin protein kinase family protein 0.65 0.34 -0.3
47 AT5G58160 actin binding 0.65 0.3 -0.33
48 AT1G35030 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G34910.1); Has 7 Blast
hits to 7 proteins in 1 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.65 0.3 -0.32
49 AT5G44310 Late embryogenesis abundant protein (LEA) family protein 0.65 0.3 -0.3
50 AT1G07020 unknown protein; Has 39 Blast hits to 39 proteins in 17
species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 3;
Plants - 28; Viruses - 0; Other Eukaryotes - 2 (source:
NCBI BLink).		 -0.64 0.32 -0.33
51 AT1G63220 Calcium-dependent lipid-binding (CaLB domain) family
protein		 -0.64 0.31 -0.34
52 AT1G09090 respiratory burst oxidase homolog B respiratory burst oxidase homolog
B, ATRBOHB-BETA, respiratory burst
oxidase homolog B		 -0.64 0.3 -0.31
53 AT4G39220 Rer1 family protein ATRER1A -0.64 0.32 -0.32
54 AT5G25140 cytochrome P450, family 71, subfamily B, polypeptide 13 cytochrome P450, family 71,
subfamily B, polypeptide 13		 -0.64 0.31 -0.33
55 AT2G32270 zinc transporter 3 precursor zinc transporter 3 precursor -0.64 0.29 -0.33
56 AT5G40590 Cysteine/Histidine-rich C1 domain family protein -0.64 0.3 -0.31
57 AT5G09250 ssDNA-binding transcriptional regulator KIWI -0.64 0.33 -0.32
58 AT1G74840 Homeodomain-like superfamily protein -0.64 0.34 -0.29
59 AT1G23330 alpha/beta-Hydrolases superfamily protein 0.64 0.33 -0.32
60 AT5G59450 GRAS family transcription factor -0.64 0.31 -0.32
61 AT3G06710 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; BEST Arabidopsis thaliana protein match is:
RING/FYVE/PHD zinc finger superfamily protein
(TAIR:AT4G32670.1); Has 15 Blast hits to 15 proteins in 3
species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0;
Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.64 0.3 -0.3
62 AT5G15900 TRICHOME BIREFRINGENCE-LIKE 19 TRICHOME BIREFRINGENCE-LIKE 19 -0.63 0.32 -0.29
63 AT2G27410 Domain of unknown function (DUF313) -0.63 0.31 -0.31
64 AT5G05220 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.63 0.32 -0.31
65 AT2G38905 Low temperature and salt responsive protein family 0.63 0.3 -0.33
66 AT2G21490 dehydrin LEA dehydrin LEA 0.63 0.32 -0.33
67 AT4G30640 RNI-like superfamily protein -0.63 0.32 -0.34
68 AT4G35380 SEC7-like guanine nucleotide exchange family protein -0.63 0.33 -0.31
69 AT1G01830 ARM repeat superfamily protein 0.63 0.32 -0.32
70 AT3G04080 apyrase 1 apyrase 1, apyrase 1 -0.63 0.3 -0.35
71 AT1G22370 UDP-glucosyl transferase 85A5 UDP-glucosyl transferase 85A5,
UDP-glucosyl transferase 85A5		 0.63 0.32 -0.31
72 AT3G18660 plant glycogenin-like starch initiation protein 1 glucuronic acid substitution of
xylan 1, plant glycogenin-like
starch initiation protein 1		 0.63 0.32 -0.31
73 AT1G13580 LAG1 longevity assurance homolog 3 LAG1 longevity assurance homolog
3, LAG One Homologue 3		 -0.63 0.32 -0.33
74 AT3G13672 TRAF-like superfamily protein 0.63 0.31 -0.33
75 AT2G42560 late embryogenesis abundant domain-containing protein / LEA
domain-containing protein		 0.63 0.32 -0.34
76 AT5G57350 H(+)-ATPase 3 H(+)-ATPase 3, ARABIDOPSIS
THALIANA ARABIDOPSIS H(+)-ATPASE,
H(+)-ATPase 3		 0.63 0.32 -0.33
77 AT2G34840 Coatomer epsilon subunit 0.62 0.33 -0.32
78 AT5G24070 Peroxidase superfamily protein -0.62 0.33 -0.3
79 AT1G31010 organellar single-stranded DNA binding protein 4 organellar single-stranded DNA
binding protein 4		 -0.62 0.31 -0.33
80 AT5G43910 pfkB-like carbohydrate kinase family protein -0.62 0.3 -0.3
81 AT1G80800 pseudogene, 40S ribosomal protein S12 (RPS12B), similar to
ribosomal protein S12 GB:AAD39838 GI:5106775 from (Hordeum
vulgare); blastp match of 65% identity and 4.7e-12 P-value
to GP|23617253|dbj|BAC20920.1||AP005764 putative 40S
ribosomal protein S12 {Oryza sativa (japonica
cultivar-group)}		 0.62 0.31 -0.3
82 AT3G07590 Small nuclear ribonucleoprotein family protein -0.62 0.3 -0.3
83 AT2G27610 Tetratricopeptide repeat (TPR)-like superfamily protein -0.62 0.3 -0.33
84 AT2G15042 Leucine-rich repeat (LRR) family protein 0.61 0.31 -0.32
85 AT1G06560 NOL1/NOP2/sun family protein -0.61 0.33 -0.32
86 AT3G28200 Peroxidase superfamily protein -0.61 0.29 -0.34
87 AT5G11640 Thioredoxin superfamily protein -0.61 0.31 -0.31
88 AT5G10930 CBL-interacting protein kinase 5 CBL-interacting protein kinase 5,
SNF1-RELATED PROTEIN KINASE 3.24		 0.61 0.28 -0.3
89 AT1G28160 Integrase-type DNA-binding superfamily protein -0.61 0.32 -0.31
90 AT5G06210 RNA binding (RRM/RBD/RNP motifs) family protein -0.61 0.31 -0.3
91 AT4G17460 Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein HAT1 -0.61 0.3 -0.32
92 AT1G13260 related to ABI3/VP1 1 ETHYLENE RESPONSE DNA BINDING
FACTOR 4, related to ABI3/VP1 1		 -0.6 0.31 -0.33
93 AT3G56270 Plant protein of unknown function (DUF827) 0.6 0.3 -0.33
94 AT3G19890 F-box family protein -0.6 0.3 -0.3
95 AT3G18940 clast3-related -0.6 0.32 -0.32
96 AT2G32470 F-box associated ubiquitination effector family protein -0.6 0.33 -0.29
97 AT3G58450 Adenine nucleotide alpha hydrolases-like superfamily
protein		 0.6 0.31 -0.33
98 AT1G18580 galacturonosyltransferase 11 galacturonosyltransferase 11 -0.6 0.29 -0.29
99 AT1G09660 RNA-binding KH domain-containing protein -0.6 0.31 -0.3
100 AT2G43260 F-box and associated interaction domains-containing protein -0.6 0.32 -0.32
101 AT4G16400 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G13175.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.6 0.3 -0.29
102 AT5G14070 Thioredoxin superfamily protein ROXY2 -0.6 0.32 -0.3
103 AT4G35200 Arabidopsis protein of unknown function (DUF241) -0.6 0.32 -0.3
104 AT4G39180 Sec14p-like phosphatidylinositol transfer family protein ARABIDOPSIS THALIANA SECRETION 14,
SECRETION 14		 0.6 0.3 -0.31
105 AT2G23310 Rer1 family protein ATRER1C1 -0.6 0.29 -0.32
106 AT1G24735 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.6 0.3 -0.32
107 AT5G20820 SAUR-like auxin-responsive protein family -0.6 0.31 -0.31
108 AT2G36320 A20/AN1-like zinc finger family protein -0.59 0.32 -0.31
109 AT3G25510 disease resistance protein (TIR-NBS-LRR class), putative -0.59 0.31 -0.31
110 AT4G22680 myb domain protein 85 myb domain protein 85, myb domain
protein 85		 0.59 0.31 -0.33
111 AT4G18960 K-box region and MADS-box transcription factor family
protein 		AGAMOUS -0.59 0.33 -0.32
112 AT5G60290 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 0.59 0.3 -0.33
113 AT1G60995 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: cellular_component
unknown; EXPRESSED IN: 20 plant structures; EXPRESSED
DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s:
Membralin (InterPro:IPR019144); Has 172 Blast hits to 170
proteins in 70 species: Archae - 0; Bacteria - 0; Metazoa -
110; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes
- 24 (source: NCBI BLink).		 -0.59 0.31 -0.32
114 AT5G49720 glycosyl hydrolase 9A1 glycosyl hydrolase 9A1, DEFECTIVE
CYTOKINESIS, glycosyl hydrolase
9A1, IRREGULAR XYLEM 2, KORRIGAN,
KORRIGAN 1, RADIALLY SWOLLEN 2,
TUMOROUS SHOOT DEVELOPMENT 1		 -0.59 0.29 -0.3
115 AT4G22330 Alkaline phytoceramidase (aPHC) ATCES1 -0.59 0.28 -0.32
116 AT1G17870 ethylene-dependent gravitropism-deficient and
yellow-green-like 3		 ETHYLENE-DEPENDENT
GRAVITROPISM-DEFICIENT AND
YELLOW-GREEN-LIKE 3,
ETHYLENE-DEPENDENT
GRAVITROPISM-DEFICIENT AND
YELLOW-GREEN-LIKE 3		 0.59 0.29 -0.3
117 AT4G00830 RNA-binding (RRM/RBD/RNP motifs) family protein LHP1-Interacting Factor 2 -0.59 0.31 -0.31
118 AT1G70400 CONTAINS InterPro DOMAIN/s: NOSIC (InterPro:IPR012976);
BEST Arabidopsis thaliana protein match is: pre-mRNA
processing ribonucleoprotein binding region-containing
protein (TAIR:AT1G60170.1); Has 479 Blast hits to 479
proteins in 178 species: Archae - 0; Bacteria - 0; Metazoa
- 125; Fungi - 138; Plants - 124; Viruses - 0; Other
Eukaryotes - 92 (source: NCBI BLink).		 -0.59 0.32 -0.32
119 AT1G09760 U2 small nuclear ribonucleoprotein A U2 small nuclear ribonucleoprotein
A		 -0.59 0.31 -0.32
120 AT5G06570 alpha/beta-Hydrolases superfamily protein -0.59 0.31 -0.32
121 AT2G07040 Leucine-rich repeat protein kinase family protein ATPRK2A, PRK2A -0.59 0.3 -0.32
122 AT4G19810 Glycosyl hydrolase family protein with chitinase insertion
domain		 class V chitinase 0.59 0.32 -0.31
123 AT1G47280 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 9 plant structures;
EXPRESSED DURING: L mature pollen stage, M germinated
pollen stage, 4 anthesis, C globular stage, petal
differentiation and expansion stage; Has 6 Blast hits to 6
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 0.58 0.32 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
124 C0056 AMP - AMP PRPP biosynthesis I,
fatty acid biosynthesis (plant mitochondria),
adenine and adenosine salvage VI,
biotin-carboxyl carrier protein assembly,
molybdenum cofactor biosynthesis II (eukaryotes),
gluconeogenesis I,
adenine and adenosine salvage II,
asparagine biosynthesis I,
L-glutamine biosynthesis II (tRNA-dependent),
trans-cinnamoyl-CoA biosynthesis,
IAA degradation V,
ethanol degradation II (cytosol),
arginine biosynthesis I,
IAA degradation IV,
fatty acid activation,
selenate reduction,
IAA biosynthesis VII,
4-hydroxybenzoate biosynthesis V,
tetrapyrrole biosynthesis I,
flavonoid biosynthesis,
indole-3-acetyl-amino acid biosynthesis,
glutamine biosynthesis III,
ethanol degradation IV (peroxisomal),
glycolysis I,
asparagine biosynthesis III (tRNA-dependent),
jasmonoyl-amino acid conjugates biosynthesis I,
molybdenum cofactor biosynthesis,
pyridine nucleotide cycling (plants),
scopoletin biosynthesis,
jasmonic acid biosynthesis,
adenosine nucleotides degradation I,
fatty acid beta-oxidation II (core pathway),
simple coumarins biosynthesis,
sulfate reduction II (assimilatory),
pantothenate biosynthesis,
sporopollenin precursor biosynthesis,
urea cycle,
thiamine biosynthesis II,
starch degradation II,
NAD biosynthesis I (from aspartate),
citrulline-nitric oxide cycle,
beta-alanine biosynthesis II,
arginine biosynthesis II (acetyl cycle),
suberin biosynthesis,
linoleate biosynthesis I (plants),
trans-zeatin biosynthesis,
tetrahydrofolate biosynthesis II,
purine nucleotides de novo biosynthesis II,
phenylpropanoid biosynthesis,
6-hydroxymethyl-dihydropterin diphosphate biosynthesis I,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
tRNA charging 		0.72 0.43 -0.46 C0056
125 C0109 Guanine - Guanine guanine and guanosine salvage II,
guanosine nucleotides degradation II 		0.69 0.45 -0.45 C0109
126 C0137 Leucine L-Leucine L-Leucine indole-3-acetyl-amino acid biosynthesis,
leucine biosynthesis,
jasmonoyl-amino acid conjugates biosynthesis I,
IAA biosynthesis II,
tRNA charging,
leucine degradation I 		0.61 0.36 -0.32 C0137