AT3G20760 : -
Query Information
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AGICode AT3G20760
Description Nse4, component of Smc5/6 DNA repair complex
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G20760 Nse4, component of Smc5/6 DNA repair complex 1 0.31 -0.31
2 AT3G10960 AZA-guanine resistant1 AZA-guanine resistant1,
AZA-guanine resistant1		 -0.64 0.31 -0.3
3 AT4G35350 xylem cysteine peptidase 1 xylem cysteine peptidase 1 -0.6 0.29 -0.31
4 AT3G29160 SNF1 kinase homolog 11 SNF1 kinase homolog 11, SNF1
kinase homolog 11, SNF1 kinase
homolog 11, SNF1-RELATED PROTEIN
KINASE 1.2		 -0.57 0.31 -0.32
5 AT4G29630 Cytidine/deoxycytidylate deaminase family protein 0.57 0.34 -0.31
6 AT2G19330 plant intracellular ras group-related LRR 6 plant intracellular ras
group-related LRR 6		 -0.56 0.34 -0.3
7 AT1G52830 indole-3-acetic acid 6 indole-3-acetic acid 6, SHORT
HYPOCOTYL 1		 -0.56 0.35 -0.3
8 AT2G34820 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 0.56 0.3 -0.31
9 AT5G47635 Pollen Ole e 1 allergen and extensin family protein -0.56 0.32 -0.32
10 AT4G20140 Leucine-rich repeat transmembrane protein kinase GASSHO1 -0.55 0.32 -0.33
11 AT2G16670 transposable element gene 0.55 0.31 -0.31
12 AT1G32100 pinoresinol reductase 1 ATPRR1, pinoresinol reductase 1 -0.54 0.32 -0.33
13 AT2G31870 Poly (ADP-ribose) glycohydrolase (PARG) poly(ADP-ribose) glycohydrolase 1,
Sanskrit for 'bright'		 0.54 0.32 -0.29
14 AT4G26390 Pyruvate kinase family protein -0.51 0.32 -0.3
15 AT1G03990 Long-chain fatty alcohol dehydrogenase family protein -0.51 0.33 -0.32
16 AT5G43410 Integrase-type DNA-binding superfamily protein -0.51 0.32 -0.31
17 AT1G50420 scarecrow-like 3 SCARECROW-LIKE 3, scarecrow-like 3 0.51 0.3 -0.32
18 AT3G50295 pseudogene, hypothetical protein 0.49 0.3 -0.31
19 AT1G43590 transposable element gene 0.49 0.31 -0.31
20 AT3G28155 BEST Arabidopsis thaliana protein match is: ARM repeat
superfamily protein (TAIR:AT2G35630.1); Has 19 Blast hits
to 19 proteins in 8 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.49 0.32 -0.31
21 AT1G68170 nodulin MtN21 /EamA-like transporter family protein 0.49 0.31 -0.3
22 AT5G48230 acetoacetyl-CoA thiolase 2 acetoacetyl-CoA thiolase 2, EMBRYO
DEFECTIVE 1276		 -0.49 0.32 -0.31
23 AT1G35890 NAC (No Apical Meristem) domain transcriptional regulator
superfamily protein		 0.48 0.3 -0.3
24 AT1G53980 Ubiquitin-like superfamily protein -0.48 0.3 -0.31
25 AT1G09680 Pentatricopeptide repeat (PPR) superfamily protein 0.48 0.34 -0.34
26 AT5G35010 transposable element gene 0.48 0.3 -0.32
27 AT2G04840 Protein of unknown function (DUF295) 0.48 0.31 -0.3
28 AT1G54170 CTC-interacting domain 3 CTC-interacting domain 3 -0.47 0.32 -0.32
29 AT4G36450 mitogen-activated protein kinase 14 mitogen-activated protein kinase
14, MPK14, mitogen-activated
protein kinase 14		 0.47 0.31 -0.3
30 AT3G59180 Protein with RNI-like/FBD-like domains 0.47 0.31 -0.31
31 AT3G31380 transposable element gene -0.46 0.31 -0.3
32 AT1G03920 Protein kinase family protein -0.46 0.32 -0.3
33 AT1G11880 transferases, transferring hexosyl groups -0.46 0.31 -0.31
34 AT1G32250 Calcium-binding EF-hand family protein 0.46 0.32 -0.3
35 AT3G14380 Uncharacterised protein family (UPF0497) 0.46 0.31 -0.32
36 AT4G11210 Disease resistance-responsive (dirigent-like protein)
family protein		 -0.45 0.31 -0.33
37 AT2G21690 RNA-binding (RRM/RBD/RNP motifs) family protein 0.45 0.32 -0.31
38 AT2G31035 BEST Arabidopsis thaliana protein match is: OSBP(oxysterol
binding protein)-related protein 1B (TAIR:AT2G31030.1); Has
7 Blast hits to 7 proteins in 2 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses -
0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.45 0.31 -0.32
39 AT4G15590 transposable element gene 0.45 0.31 -0.34
40 AT1G49790 F-box associated ubiquitination effector family protein 0.45 0.34 -0.3
41 AT1G14930 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 0.43 0.3 -0.32
42 AT4G38940 Galactose oxidase/kelch repeat superfamily protein 0.43 0.31 -0.31
43 AT5G28800 unknown protein; Has 1 Blast hits to 1 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.43 0.33 -0.32
44 AT5G07540 glycine-rich protein 16 ATGRP-6, ATGRP16, glycine-rich
protein 16		 0.42 0.31 -0.32
45 AT1G06170 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 -0.41 0.31 -0.3
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
46 C0053 ADP - ADP phosphatidylcholine biosynthesis I,
mannitol degradation II,
lipid IVA biosynthesis,
stachyose degradation,
Rubisco shunt,
copper transport II,
glycerol degradation IV,
chorismate biosynthesis,
folate polyglutamylation II,
galactose degradation III,
D-myo-inositol (1,4,5)-trisphosphate biosynthesis,
UDP-L-arabinose biosynthesis II (from L-arabinose),
cadmium transport I,
folate polyglutamylation,
coenzyme A biosynthesis,
sulfate activation for sulfonation,
1,4-dihydroxy-2-naphthoate biosynthesis II (plants),
pyrimidine deoxyribonucleotides de novo biosynthesis I,
galactose degradation II,
inosine-5'-phosphate biosynthesis II,
ribose degradation,
acetyl-CoA biosynthesis (from citrate),
inositol pyrophosphates biosynthesis,
fatty acid biosynthesis initiation I,
xylose degradation I,
adenine and adenosine salvage VI,
TCA cycle variation III (eukaryotic),
tetrahydrofolate biosynthesis II,
phosphatidylethanolamine biosynthesis II,
pyridoxal 5'-phosphate salvage pathway,
citrulline biosynthesis,
trans-zeatin biosynthesis,
glutamine biosynthesis I,
arginine biosynthesis II (acetyl cycle),
L-Ndelta-acetylornithine biosynthesis,
mevalonate pathway I,
methionine biosynthesis II,
trehalose degradation II (trehalase),
citrulline degradation,
methionine salvage pathway,
TCA cycle variation V (plant),
chlorophyllide a biosynthesis I,
starch degradation I,
methylerythritol phosphate pathway,
pyridine nucleotide cycling (plants),
ceramide degradation,
biotin-carboxyl carrier protein assembly,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
UDP-D-galacturonate biosynthesis II (from D-galacturonate),
asparagine biosynthesis III (tRNA-dependent),
superpathway of glyoxylate cycle and fatty acid degradation,
NAD/NADH phosphorylation and dephosphorylation,
1D-myo-inositol hexakisphosphate biosynthesis V (from Ins(1,3,4)P3),
galactose degradation I (Leloir pathway),
uridine-5'-phosphate biosynthesis,
lipid-dependent phytate biosynthesis II (via Ins(1,3,4)P3),
sucrose degradation III,
lysine biosynthesis VI,
sphingolipid biosynthesis (plants),
choline biosynthesis I,
GDP-glucose biosynthesis,
photorespiration,
gamma-glutamyl cycle (plant pathway),
5-aminoimidazole ribonucleotide biosynthesis I,
gamma-glutamyl cycle,
thiamine biosynthesis II,
proline biosynthesis III,
glutathione biosynthesis,
folate transformations II,
ornithine biosynthesis,
diphthamide biosynthesis,
S-methyl-5'-thioadenosine degradation I,
starch biosynthesis,
arginine biosynthesis I,
homoserine biosynthesis,
flavin biosynthesis I (bacteria and plants),
sucrose biosynthesis I,
leucine degradation I,
glycolysis I,
pyrimidine ribonucleotides interconversion,
1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza),
glycolysis IV (plant cytosol),
Calvin-Benson-Bassham cycle,
UDP-D-glucuronate biosynthesis (from myo-inositol),
guanine and guanosine salvage III,
glutamine biosynthesis III,
L-glutamine biosynthesis II (tRNA-dependent),
GDP-L-fucose biosynthesis II (from L-fucose),
nitrate reduction II (assimilatory),
ammonia assimilation cycle II,
gluconeogenesis I,
threonine biosynthesis from homoserine,
mannose degradation,
urea cycle,
lipid-dependent phytate biosynthesis I (via Ins(1,4,5)P3),
biotin biosynthesis II 		-0.73 0.45 -0.43 C0053
47 C0027 2-Oxoglutaric acid - α-Ketoglutarate gibberellin biosynthesis III (early C-13 hydroxylation),
leucopelargonidin and leucocyanidin biosynthesis,
aspartate degradation II,
ornithine biosynthesis,
isoleucine biosynthesis I (from threonine),
pantothenate biosynthesis,
phenylalanine degradation III,
flavonol biosynthesis,
lysine biosynthesis VI,
luteolin biosynthesis,
ammonia assimilation cycle II,
serine biosynthesis,
flavonoid biosynthesis,
glutamate biosynthesis V,
aspartate biosynthesis,
glutamate degradation I,
gibberellin inactivation I (2beta-hydroxylation),
alanine degradation III,
photorespiration,
valine biosynthesis,
glycine biosynthesis,
arginine biosynthesis II (acetyl cycle),
arginine degradation I (arginase pathway),
gibberellin biosynthesis II (early C-3 hydroxylation),
leucine biosynthesis,
glutamate biosynthesis IV,
tyrosine biosynthesis II,
proline biosynthesis III,
citrulline biosynthesis,
anthocyanin biosynthesis (pelargonidin 3-O-glucoside, cyanidin 3-O-glucoside),
L-Ndelta-acetylornithine biosynthesis,
isoleucine degradation I,
alanine biosynthesis II,
tyrosine biosynthesis I,
TCA cycle variation III (eukaryotic),
leucine degradation I,
alanine degradation II (to D-lactate),
TCA cycle variation V (plant),
arginine degradation VI (arginase 2 pathway),
valine degradation I,
gibberellin biosynthesis I (non C-3, non C-13 hydroxylation),
1,4-dihydroxy-2-naphthoate biosynthesis II (plants),
2-ketoglutarate dehydrogenase complex,
glutamate degradation IV,
tyrosine degradation I,
anthocyanin biosynthesis (delphinidin 3-O-glucoside),
IAA biosynthesis I,
phenylalanine biosynthesis II,
lysine degradation II,
scopoletin biosynthesis,
4-hydroxyphenylpyruvate biosynthesis,
histidine biosynthesis,
glutamine biosynthesis III,
leucodelphinidin biosynthesis 		-0.63 0.43 -0.46 C0027
48 C0087 Erythrose-4-phosphate D-Erythrose-4-phosphate D-Erythrose-4-phosphate Rubisco shunt,
pentose phosphate pathway (non-oxidative branch),
chorismate biosynthesis,
Calvin-Benson-Bassham cycle 		-0.59 0.46 -0.45 C0087