AT3G27750 : EMBRYO DEFECTIVE 3123
Query Information
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AGICode AT3G27750
Description FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: Vacuolar sorting protein 9 (VPS9) domain (TAIR:AT5G09320.1); Has 106 Blast hits to 106 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 102; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G27750 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12
growth stages; BEST Arabidopsis thaliana protein match is:
Vacuolar sorting protein 9 (VPS9) domain
(TAIR:AT5G09320.1); Has 106 Blast hits to 106 proteins in
16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
4; Plants - 102; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 EMBRYO DEFECTIVE 3123 1 0.32 -0.33
2 AT1G55370 NDH-dependent cyclic electron flow 5 NDH-dependent cyclic electron flow
5		 0.93 0.34 -0.32
3 AT1G07320 ribosomal protein L4 EMBRYO DEFECTIVE 2784, ribosomal
protein L4		 0.91 0.31 -0.3
4 AT5G14660 peptide deformylase 1B ATDEF2, DEF2, peptide deformylase
1B		 0.91 0.33 -0.32
5 AT1G78630 Ribosomal protein L13 family protein embryo defective 1473 0.91 0.31 -0.33
6 AT1G68590 Ribosomal protein PSRP-3/Ycf65 0.91 0.33 -0.32
7 AT5G14320 Ribosomal protein S13/S18 family EMBRYO DEFECTIVE 3137 0.91 0.3 -0.33
8 AT2G29180 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; Has 34
Blast hits to 33 proteins in 16 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses
- 0; Other Eukaryotes - 1 (source: NCBI BLink).		 0.9 0.3 -0.32
9 AT2G40690 NAD-dependent glycerol-3-phosphate dehydrogenase family
protein		 GLY1, SUPPRESSOR OF FATTY ACID
DESATURASE DEFICIENCY 1		 0.9 0.32 -0.31
10 AT1G67700 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 49
Blast hits to 49 proteins in 20 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses
- 0; Other Eukaryotes - 5 (source: NCBI BLink).		 0.9 0.31 -0.3
11 AT1G50900 Ankyrin repeat family protein Grana Deficient Chloroplast 1,
LHCP translocation defect		 0.9 0.31 -0.29
12 AT1G75690 DnaJ/Hsp40 cysteine-rich domain superfamily protein LOW QUANTUM YIELD OF PHOTOSYSTEM
II 1		 0.9 0.32 -0.3
13 AT1G48350 Ribosomal L18p/L5e family protein EMBRYO DEFECTIVE 3105 0.9 0.31 -0.32
14 AT3G54210 Ribosomal protein L17 family protein 0.89 0.32 -0.29
15 AT1G64770 NDH-dependent cyclic electron flow 1 NDH-dependent cyclic electron flow
1, NAD(P)H DEHYDROGENASE SUBUNIT
45, Photosynthetic NDH subcomplex
B 2		 0.89 0.31 -0.32
16 AT2G03420 unknown protein; Has 38 Blast hits to 38 proteins in 17
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 38; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.89 0.28 -0.3
17 AT4G18480 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 CHLORINA 42, CHLORINA 42, CHL11,
CHLI-1, CHLI1		 0.89 0.32 -0.3
18 AT5G11450 Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP
family protein		 PsbP domain protein 5 0.89 0.31 -0.33
19 AT3G23700 Nucleic acid-binding proteins superfamily 0.89 0.31 -0.3
20 AT5G45680 FK506-binding protein 13 FK506 BINDING PROTEIN 13,
FK506-binding protein 13		 0.89 0.3 -0.29
21 AT5G27290 unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 22
plant structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT1G54680.3); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink).		 0.89 0.33 -0.29
22 AT2G24060 Translation initiation factor 3 protein 0.89 0.32 -0.28
23 AT3G25480 Rhodanese/Cell cycle control phosphatase superfamily
protein		 0.89 0.31 -0.35
24 AT1G02150 Tetratricopeptide repeat (TPR)-like superfamily protein 0.89 0.31 -0.31
25 AT5G58250 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
thylakoid, chloroplast; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 14 growth stages; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF2488
(InterPro:IPR019616); Has 1807 Blast hits to 1807 proteins
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes -
339 (source: NCBI BLink).		 EMBRYO DEFECTIVE 3143 0.88 0.32 -0.31
26 AT2G30200 catalytics;transferases;[acyl-carrier-protein]
S-malonyltransferases;binding		 EMBRYO DEFECTIVE 3147 0.88 0.34 -0.33
27 AT2G33450 Ribosomal L28 family 0.88 0.31 -0.31
28 AT5G08050 Protein of unknown function (DUF1118) 0.88 0.29 -0.34
29 AT4G38970 fructose-bisphosphate aldolase 2 fructose-bisphosphate aldolase 2 0.88 0.33 -0.31
30 AT2G33430 differentiation and greening-like 1 DIFFERENTIATION AND GREENING-LIKE,
differentiation and greening-like
1		 0.88 0.31 -0.3
31 AT1G02280 translocon at the outer envelope membrane of chloroplasts
33		 ATTOC33, PLASTID PROTEIN IMPORT 1,
translocon at the outer envelope
membrane of chloroplasts 33		 0.88 0.31 -0.31
32 AT1G32470 Single hybrid motif superfamily protein 0.88 0.33 -0.29
33 AT2G38140 plastid-specific ribosomal protein 4 plastid-specific ribosomal protein
4		 0.88 0.33 -0.31
34 AT5G22340 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 58 Blast hits to 58 proteins
in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 57; Viruses - 0; Other Eukaryotes - 1
(source: NCBI BLink).		 0.88 0.3 -0.32
35 AT5G53490 Tetratricopeptide repeat (TPR)-like superfamily protein 0.88 0.32 -0.34
36 AT5G19620 outer envelope protein of 80 kDa ARABIDOPSIS THALIANA OUTER
ENVELOPE PROTEIN OF 80 KDA, EMBRYO
DEFECTIVE 213, outer envelope
protein of 80 kDa, translocon at
the outer envelope membrane of
chloroplasts 75-V		 0.88 0.33 -0.32
37 AT3G06730 Thioredoxin z thioredoxin putative plastidic,
Thioredoxin z		 0.87 0.3 -0.3
38 AT4G28660 photosystem II reaction center PSB28 protein photosystem II reaction center
PSB28 protein		 0.87 0.31 -0.32
39 AT5G45930 magnesium chelatase i2 CHL I2, CHLI-2, magnesium
chelatase i2		 0.87 0.28 -0.3
40 AT3G49470 nascent polypeptide-associated complex subunit alpha-like
protein 2		 nascent polypeptide-associated
complex subunit alpha-like protein
2		 0.87 0.29 -0.32
41 AT4G37510 Ribonuclease III family protein 0.87 0.32 -0.31
42 AT2G14880 SWIB/MDM2 domain superfamily protein 0.87 0.31 -0.3
43 AT2G37220 RNA-binding (RRM/RBD/RNP motifs) family protein 0.87 0.3 -0.33
44 AT4G16980 arabinogalactan-protein family 0.86 0.31 -0.34
45 AT4G34730 ribosome-binding factor A family protein 0.86 0.3 -0.32
46 AT2G41950 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, plant-type cell wall; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 53
Blast hits to 53 proteins in 24 species: Archae - 0;
Bacteria - 27; Metazoa - 0; Fungi - 0; Plants - 26; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.86 0.31 -0.31
47 AT3G53460 chloroplast RNA-binding protein 29 chloroplast RNA-binding protein 29 0.86 0.29 -0.32
48 AT1G53800 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G53250.1); Has 1136 Blast hits
to 882 proteins in 242 species: Archae - 2; Bacteria - 216;
Metazoa - 257; Fungi - 77; Plants - 87; Viruses - 4; Other
Eukaryotes - 493 (source: NCBI BLink).		 0.86 0.32 -0.28
49 AT1G22590 AGAMOUS-like 87 AGAMOUS-like 87 0.86 0.33 -0.32
50 AT3G02380 CONSTANS-like 2 CONSTANS-LIKE 2, CONSTANS-like 2 0.85 0.33 -0.34
51 AT3G54900 CAX interacting protein 1 GLUTAREDOXIN, CAX interacting
protein 1		 0.85 0.29 -0.3
52 AT5G41050 Pollen Ole e 1 allergen and extensin family protein 0.85 0.3 -0.31
53 AT3G56010 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 25
Blast hits to 25 proteins in 12 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.85 0.34 -0.32
54 AT5G02120 one helix protein one helix protein, PIGMENT
DEFECTIVE 335		 0.85 0.31 -0.31
55 AT3G59400 enzyme binding;tetrapyrrole binding GENOMES UNCOUPLED 4 0.85 0.31 -0.32
56 AT4G25990 CCT motif family protein CIL 0.85 0.32 -0.32
57 AT3G63410 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 ALBINO OR PALE GREEN MUTANT 1,
E37, INNER ENVELOPE PROTEIN 37,
VITAMIN E DEFECTIVE 3		 0.85 0.28 -0.33
58 AT5G24430 Calcium-dependent protein kinase (CDPK) family protein -0.82 0.33 -0.31
59 AT2G36380 pleiotropic drug resistance 6 ATP-binding cassette G34,
PLEIOTROPIC DRUG RESISTANCE 6,
pleiotropic drug resistance 6		 -0.82 0.29 -0.33
60 AT1G18260 HCP-like superfamily protein EMS-mutagenized bri1 suppressor 5,
HRD3A		 -0.81 0.32 -0.3
61 AT5G16450 Ribonuclease E inhibitor RraA/Dimethylmenaquinone
methyltransferase		 -0.81 0.32 -0.31
62 AT4G10050 esterase/lipase/thioesterase family protein -0.81 0.31 -0.31
63 AT5G38710 Methylenetetrahydrofolate reductase family protein -0.81 0.31 -0.32
64 AT4G31240 protein kinase C-like zinc finger protein -0.8 0.35 -0.34
65 AT2G48010 receptor-like kinase in in flowers 3 receptor-like kinase in in flowers
3		 -0.8 0.32 -0.3
66 AT1G45145 thioredoxin H-type 5 THIOREDOXIN H-TYPE 5, thioredoxin
H-type 5, LOCUS OF INSENSITIVITY
TO VICTORIN 1, thioredoxin H-type
5		 -0.8 0.33 -0.31
67 AT5G44790 copper-exporting ATPase / responsive-to-antagonist 1 /
copper-transporting ATPase (RAN1)		 HMA7, RESPONSIVE-TO-ANTAGONIST 1 -0.79 0.33 -0.32
68 AT3G15500 NAC domain containing protein 3 NAC domain containing protein 55,
NAC domain containing protein 3,
NAC domain containing protein 55,
NAC domain containing protein 3		 -0.79 0.32 -0.32
69 AT3G02875 Peptidase M20/M25/M40 family protein IAA-LEUCINE RESISTANT 1 -0.79 0.31 -0.31
70 AT3G56310 Melibiase family protein -0.79 0.33 -0.32
71 AT2G17520 Endoribonuclease/protein kinase IRE1-like ARABIDOPSIS THALIANA INOSITOL
REQUIRING 1-2, INOSITOL REQUIRING
1-2, IRE1A		 -0.78 0.29 -0.32
72 AT4G15280 UDP-glucosyl transferase 71B5 UDP-glucosyl transferase 71B5 -0.78 0.3 -0.29
73 AT1G26690 emp24/gp25L/p24 family/GOLD family protein -0.78 0.31 -0.34
74 AT2G23450 Protein kinase superfamily protein -0.77 0.3 -0.32
75 AT3G49490 unknown protein; Has 722 Blast hits to 186 proteins in 64
species: Archae - 0; Bacteria - 30; Metazoa - 72; Fungi -
48; Plants - 38; Viruses - 0; Other Eukaryotes - 534
(source: NCBI BLink).		 -0.77 0.3 -0.31
76 AT4G29950 Ypt/Rab-GAP domain of gyp1p superfamily protein -0.76 0.32 -0.31
77 AT5G09980 elicitor peptide 4 precursor elicitor peptide 4 precursor -0.76 0.31 -0.31
78 AT1G69930 glutathione S-transferase TAU 11 glutathione S-transferase TAU 11,
glutathione S-transferase TAU 11		 -0.76 0.31 -0.31
79 AT1G23040 hydroxyproline-rich glycoprotein family protein -0.75 0.35 -0.31
80 AT4G29210 gamma-glutamyl transpeptidase 4 gamma-glutamyl transpeptidase 3,
gamma-glutamyl transpeptidase 4		 -0.75 0.31 -0.33
81 AT3G61930 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; EXPRESSED
IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, C
globular stage, petal differentiation and expansion stage;
Has 11 Blast hits to 11 proteins in 5 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 -0.75 0.31 -0.33
82 AT1G61120 terpene synthase 04 GERANYLLINALOOL SYNTHASE, terpene
synthase 04, TERPENE SYNTHASE 4		 -0.75 0.32 -0.31
83 AT3G21230 4-coumarate:CoA ligase 5 4-coumarate:CoA ligase 5 -0.75 0.29 -0.32
84 AT3G14620 cytochrome P450, family 72, subfamily A, polypeptide 8 cytochrome P450, family 72,
subfamily A, polypeptide 8		 -0.75 0.32 -0.3
85 AT2G44500 O-fucosyltransferase family protein -0.75 0.33 -0.3
86 AT2G31260 autophagy 9 (APG9) autophagy 9, ATAPG9 -0.75 0.33 -0.32
87 AT1G69450 Early-responsive to dehydration stress protein (ERD4) -0.75 0.32 -0.31
88 AT1G72470 exocyst subunit exo70 family protein D1 exocyst subunit exo70 family
protein D1, exocyst subunit exo70
family protein D1		 -0.75 0.29 -0.35
89 AT3G44320 nitrilase 3 NITRILASE 3, nitrilase 3 -0.75 0.33 -0.3
90 AT3G59700 lectin-receptor kinase lectin-receptor kinase,
lectin-receptor kinase,
LECTIN-RECEPTOR KINASE 1		 -0.74 0.33 -0.34
91 AT3G26100 Regulator of chromosome condensation (RCC1) family protein -0.74 0.32 -0.33
92 AT5G61450 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.74 0.32 -0.33
93 AT4G29490 Metallopeptidase M24 family protein -0.74 0.32 -0.31
94 AT3G27610 Nucleotidylyl transferase superfamily protein -0.74 0.34 -0.29
95 AT3G51440 Calcium-dependent phosphotriesterase superfamily protein -0.74 0.32 -0.34
96 AT1G79690 nudix hydrolase homolog 3 nudix hydrolase homolog 3, nudix
hydrolase homolog 3		 -0.74 0.31 -0.33
97 AT5G06870 polygalacturonase inhibiting protein 2 ARABIDOPSIS POLYGALACTURONASE
INHIBITING PROTEIN 2,
polygalacturonase inhibiting
protein 2		 -0.74 0.32 -0.3
98 AT3G51450 Calcium-dependent phosphotriesterase superfamily protein -0.74 0.32 -0.27
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
99 C0120 Isocitric acid - Isocitrate TCA cycle variation V (plant),
TCA cycle variation III (eukaryotic),
glutamine biosynthesis III,
glyoxylate cycle 		-0.78 0.44 -0.45 C0120
100 C0220 Pyruvic acid - Pyruvate sucrose degradation to ethanol and lactate (anaerobic),
alanine degradation II (to D-lactate),
alanine degradation III,
glutamine biosynthesis III,
pyruvate fermentation to ethanol II,
serine racemization,
methylerythritol phosphate pathway,
1,4-dihydroxy-2-naphthoate biosynthesis II (plants),
valine biosynthesis,
seleno-amino acid biosynthesis,
phenylalanine degradation III,
an electron-transfer-related quinone + D-lactate -> an electron-transfer-related quinol + pyruvate,
tetrahydrofolate biosynthesis II,
methylglyoxal degradation I,
glycolysis I,
tryptophan biosynthesis,
salicylate biosynthesis I,
pyruvate fermentation to lactate,
methionine biosynthesis II,
glutathione-mediated detoxification II,
IAA biosynthesis I,
TCA cycle variation V (plant),
Rubisco shunt,
gluconeogenesis I,
acetaldehyde biosynthesis I,
homocysteine and cysteine interconversion,
glycolysis IV (plant cytosol),
4-aminobutyrate degradation IV,
beta-alanine biosynthesis II,
isoleucine biosynthesis I (from threonine),
glutamate degradation IV,
lysine biosynthesis VI,
acetyl-CoA biosynthesis (from pyruvate),
alanine biosynthesis II 		-0.77 0.46 -0.45 C0220