AT3G16100 : ATRAB7D
Query Information
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AGICode AT3G16100
Description RAB GTPase homolog G3C
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G16100 RAB GTPase homolog G3C ATRAB7D, RAB GTPase homolog G3C,
RAB GTPase homolog G3C		 1 0.34 -0.34
2 AT4G35000 ascorbate peroxidase 3 ascorbate peroxidase 3 0.84 0.31 -0.29
3 AT1G12310 Calcium-binding EF-hand family protein 0.82 0.31 -0.32
4 AT3G05000 Transport protein particle (TRAPP) component 0.81 0.34 -0.31
5 AT2G42770 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein 0.8 0.3 -0.33
6 AT2G21290 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 63 Blast hits to 63 proteins
in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 0.79 0.29 -0.33
7 AT1G26630 Eukaryotic translation initiation factor 5A-1 (eIF-5A 1)
protein		 EUKARYOTIC ELONGATION FACTOR 5A-2,
EUKARYOTIC ELONGATION FACTOR 5A-2,
FUMONISIN B1-RESISTANT12		 0.79 0.32 -0.31
8 AT1G23220 Dynein light chain type 1 family protein 0.78 0.32 -0.34
9 AT3G13490 Lysyl-tRNA synthetase, class II ARABIDOPSIS THALIANA LYSYL-TRNA
SYNTHETASE 2, OVULE ABORTION 5		 0.77 0.31 -0.33
10 AT4G34720 ATPase, F0/V0 complex, subunit C protein ATVHA-C1, AVA-P1, VACUOLAR
H+-PUMPING ATPASE C1		 0.75 0.29 -0.3
11 AT2G30410 tubulin folding cofactor A (KIESEL) KIESEL, TUBULIN FOLDING FACTOR A 0.75 0.33 -0.31
12 AT5G24650 Mitochondrial import inner membrane translocase subunit
Tim17/Tim22/Tim23 family protein		 0.75 0.31 -0.32
13 AT4G14420 HR-like lesion-inducing protein-related 0.75 0.33 -0.32
14 AT4G09720 RAB GTPase homolog G3A RAB GTPase homolog G3A, RAB GTPase
homolog G3A		 0.75 0.3 -0.31
15 AT5G17560 BolA-like family protein 0.75 0.31 -0.33
16 AT1G15370 SNARE-like superfamily protein 0.75 0.34 -0.32
17 AT2G38550 Transmembrane proteins 14C 0.74 0.32 -0.32
18 AT2G47580 spliceosomal protein U1A spliceosomal protein U1A 0.74 0.33 -0.29
19 AT2G47170 Ras-related small GTP-binding family protein ARF1A1C 0.74 0.31 -0.31
20 AT3G22110 20S proteasome alpha subunit C1 20S proteasome alpha subunit C1 0.74 0.34 -0.28
21 AT5G19760 Mitochondrial substrate carrier family protein 0.74 0.3 -0.31
22 AT5G51880 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 0.74 0.33 -0.34
23 AT1G11650 RNA-binding (RRM/RBD/RNP motifs) family protein ATRBP45B, RBP45B 0.74 0.32 -0.31
24 AT5G62360 Plant invertase/pectin methylesterase inhibitor superfamily
protein		 0.73 0.33 -0.31
25 AT2G47810 nuclear factor Y, subunit B5 nuclear factor Y, subunit B5 -0.73 0.32 -0.3
26 AT2G42310 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G57785.1); Has 115 Blast hits
to 115 proteins in 48 species: Archae - 0; Bacteria - 0;
Metazoa - 4; Fungi - 44; Plants - 67; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.73 0.34 -0.32
27 AT5G06770 KH domain-containing protein / zinc finger (CCCH type)
family protein		 0.73 0.31 -0.32
28 AT2G22660 Protein of unknown function (duplicated DUF1399) -0.73 0.33 -0.31
29 AT4G18593 dual specificity protein phosphatase-related 0.72 0.32 -0.31
30 AT4G37445 BEST Arabidopsis thaliana protein match is: Calcium-binding
EF hand family protein (TAIR:AT1G64850.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.72 0.31 -0.34
31 AT5G41950 Tetratricopeptide repeat (TPR)-like superfamily protein 0.72 0.32 -0.32
32 AT1G74910 ADP-glucose pyrophosphorylase family protein 0.72 0.32 -0.31
33 AT1G78040 Pollen Ole e 1 allergen and extensin family protein 0.72 0.34 -0.3
34 AT5G65430 general regulatory factor 8 14-3-3 PROTEIN G-BOX FACTOR14
KAPPA, GF14 KAPPA, general
regulatory factor 8		 0.72 0.33 -0.32
35 AT1G60780 Clathrin adaptor complexes medium subunit family protein HAPLESS 13 0.72 0.31 -0.32
36 AT1G70490 Ras-related small GTP-binding family protein ARFA1D, ATARFA1D 0.72 0.31 -0.31
37 AT3G44540 fatty acid reductase 4 fatty acid reductase 4 -0.72 0.3 -0.32
38 AT1G54650 Methyltransferase family protein 0.72 0.32 -0.33
39 AT4G16450 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: photorespiration; LOCATED IN: mitochondrion,
mitochondrial membrane, mitochondrial respiratory chain
complex I, respiratory chain complex I, membrane; EXPRESSED
IN: 25 plant structures; EXPRESSED DURING: 15 growth
stages; Has 30201 Blast hits to 17322 proteins in 780
species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.71 0.33 -0.3
40 AT2G21195 unknown protein; Has 28 Blast hits to 28 proteins in 11
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.71 0.29 -0.31
41 AT4G39150 DNAJ heat shock N-terminal domain-containing protein 0.71 0.32 -0.34
42 AT1G72340 NagB/RpiA/CoA transferase-like superfamily protein 0.71 0.33 -0.34
43 AT4G30996 Protein of unknown function (DUF1068) NA(+)- AND K(+)-SENSITIVE 1 0.7 0.3 -0.31
44 AT5G49940 NIFU-like protein 2 CHLOROPLAST-LOCALIZED NIFU-LIKE
PROTEIN 2, NIFU-like protein 2		 0.7 0.31 -0.32
45 AT1G33811 GDSL-like Lipase/Acylhydrolase superfamily protein 0.7 0.33 -0.29
46 AT1G63170 Zinc finger, C3HC4 type (RING finger) family protein 0.7 0.3 -0.29
47 AT3G46430 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion, mitochondrial respiratory chain complex III;
EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15
growth stages; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT5G59613.2); Has 51 Blast hits to 51
proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 0.7 0.31 -0.34
48 AT1G36320 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G37920.1); Has 93 Blast hits
to 90 proteins in 22 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 85; Viruses - 0; Other
Eukaryotes - 8 (source: NCBI BLink).		 0.7 0.31 -0.32
49 AT2G39840 type one serine/threonine protein phosphatase 4 type one serine/threonine protein
phosphatase 4		 0.7 0.33 -0.32
50 AT1G13580 LAG1 longevity assurance homolog 3 LAG1 longevity assurance homolog
3, LAG One Homologue 3		 0.7 0.3 -0.31
51 AT1G04220 3-ketoacyl-CoA synthase 2 3-ketoacyl-CoA synthase 2 -0.7 0.3 -0.31
52 AT3G62730 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 13 plant structures;
EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis,
LP.02 two leaves visible, petal differentiation and
expansion stage; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G47980.1); Has 172 Blast hits
to 172 proteins in 41 species: Archae - 0; Bacteria - 73;
Metazoa - 0; Fungi - 0; Plants - 99; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.7 0.32 -0.3
53 AT3G13784 cell wall invertase 5 cell wall invertase 5, cell wall
invertase 5		 -0.69 0.34 -0.3
54 AT3G09310 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF37 (InterPro:IPR002696); Has 5781 Blast
hits to 5781 proteins in 1903 species: Archae - 0; Bacteria
- 3956; Metazoa - 2; Fungi - 0; Plants - 42; Viruses - 3;
Other Eukaryotes - 1778 (source: NCBI BLink).		 0.69 0.29 -0.31
55 AT5G43840 heat shock transcription factor A6A heat shock transcription factor
A6A, heat shock transcription
factor A6A		 -0.69 0.3 -0.32
56 AT3G51040 RTE1-homolog RTE1-homolog 0.69 0.3 -0.3
57 AT1G79770 Protein of unknown function (DUF1677) 0.68 0.31 -0.3
58 AT3G01860 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: response to cadmium ion; LOCATED IN:
chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT3G27210.1); Has 66 Blast
hits to 66 proteins in 13 species: Archae - 0; Bacteria -
0; Metazoa - 5; Fungi - 0; Plants - 61; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.68 0.31 -0.31
59 AT2G42130 Plastid-lipid associated protein PAP / fibrillin family
protein		 0.68 0.32 -0.32
60 AT1G23120 Polyketide cyclase/dehydrase and lipid transport
superfamily protein		 -0.67 0.34 -0.33
61 AT5G52340 exocyst subunit exo70 family protein A2 exocyst subunit exo70 family
protein A2, exocyst subunit exo70
family protein A2		 0.67 0.31 -0.32
62 AT3G26935 DHHC-type zinc finger family protein 0.67 0.29 -0.32
63 AT1G22610 C2 calcium/lipid-binding plant phosphoribosyltransferase
family protein		 0.67 0.3 -0.31
64 AT5G64850 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: plasma membrane;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: RPM1-interacting
protein 4, defence response (InterPro:IPR008700); BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT5G09960.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink).		 0.67 0.29 -0.32
65 AT3G17609 HY5-homolog HY5-homolog 0.67 0.34 -0.32
66 AT1G10230 SKP1-like 18 SKP1-like 18, SKP1-like 18 0.67 0.35 -0.3
67 AT5G46860 Syntaxin/t-SNARE family protein ARABIDOPSIS THALIANA SYNTAXIN OF
PLANTS 22, ARABIDOPSIS THALIANA
VACUOLAR MORPHOLOGY 3, SHOOT
GRAVITROPISM 3, SYNTAXIN OF PLANTS
22, VACUOLAR MORPHOLOGY 3		 0.67 0.31 -0.3
68 AT5G64813 Ras-related small GTP-binding family protein Light Insensitive Period1 0.67 0.31 -0.33
69 AT1G30540 Actin-like ATPase superfamily protein 0.66 0.31 -0.3
70 AT2G43810 Small nuclear ribonucleoprotein family protein 0.66 0.32 -0.32
71 AT5G05610 alfin-like 1 alfin-like 1 0.66 0.32 -0.31
72 AT4G17300 Class II aminoacyl-tRNA and biotin synthetases superfamily
protein		 ATNS1, NS1, ovule abortion 8 0.66 0.33 -0.32
73 AT4G18460 D-Tyr-tRNA(Tyr) deacylase family protein 0.66 0.33 -0.31
74 AT2G18360 alpha/beta-Hydrolases superfamily protein -0.66 0.33 -0.32
75 AT3G02750 Protein phosphatase 2C family protein 0.66 0.3 -0.31
76 AT5G09650 pyrophosphorylase 6 pyrophosphorylase 6,
pyrophosphorylase 6		 0.66 0.32 -0.31
77 AT5G64480 unknown protein; Has 35333 Blast hits to 34131 proteins in
2444 species: Archae - 798; Bacteria - 22429; Metazoa -
974; Fungi - 991; Plants - 531; Viruses - 0; Other
Eukaryotes - 9610 (source: NCBI BLink).		 0.66 0.33 -0.32
78 AT3G04460 peroxin-12 ABERRANT PEROXISOME MORPHOLOGY 4,
PEROXIN-12, peroxin-12		 0.66 0.31 -0.32
79 AT5G10460 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 0.66 0.31 -0.31
80 AT2G26830 Protein kinase superfamily protein embryo defective 1187 0.66 0.31 -0.31
81 AT5G53560 cytochrome B5 isoform E ATB5-A, ARABIDOPSIS CYTOCHROME B5
ISOFORM E, B5 #2, cytochrome B5
isoform E		 0.66 0.29 -0.33
82 AT1G02700 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT4G02140.1); Has 49 Blast hits to 49
proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa -
10; Fungi - 6; Plants - 29; Viruses - 0; Other Eukaryotes -
4 (source: NCBI BLink).		 -0.64 0.32 -0.29
83 AT4G22400 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G18320.2); Has 44 Blast hits
to 44 proteins in 7 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.64 0.32 -0.31
84 AT3G12500 basic chitinase basic chitinase, B-CHI, CHI-B,
basic chitinase,
PATHOGENESIS-RELATED 3,
PATHOGENESIS-RELATED 3		 -0.63 0.32 -0.33
85 AT2G34610 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G30190.1); Has 342 Blast hits
to 279 proteins in 74 species: Archae - 0; Bacteria - 7;
Metazoa - 76; Fungi - 18; Plants - 51; Viruses - 0; Other
Eukaryotes - 190 (source: NCBI BLink).		 -0.63 0.32 -0.3
86 AT5G25990 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast; BEST
Arabidopsis thaliana protein match is: Core-2/I-branching
beta-1,6-N-acetylglucosaminyltransferase family protein
(TAIR:AT5G25970.1); Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 -0.63 0.32 -0.3
87 AT3G04150 RmlC-like cupins superfamily protein -0.63 0.31 -0.3
88 AT4G18990 xyloglucan endotransglucosylase/hydrolase 29 xyloglucan
endotransglucosylase/hydrolase 29		 -0.61 0.32 -0.32
89 AT4G20880 ethylene-responsive nuclear protein / ethylene-regulated
nuclear protein (ERT2)		 -0.6 0.31 -0.33
90 AT1G15330 Cystathionine beta-synthase (CBS) protein -0.6 0.32 -0.33
91 AT5G49440 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.6 0.3 -0.31
92 AT4G15040 Subtilisin-like serine endopeptidase family protein -0.59 0.29 -0.32
93 AT5G25900 GA requiring 3 ARABIDOPSIS THALIANA ENT-KAURENE
OXIDASE 1, CYTOCHROME P450 701 A3,
GA requiring 3		 -0.58 0.32 -0.32
94 AT5G59305 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 8 plant structures;
EXPRESSED DURING: F mature embryo stage, petal
differentiation and expansion stage, E expanded cotyledon
stage, D bilateral stage; Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 -0.56 0.31 -0.32
95 AT2G04760 transposable element gene -0.56 0.34 -0.3
96 AT1G71690 Protein of unknown function (DUF579) -0.55 0.3 -0.32
97 AT2G23240 Plant EC metallothionein-like protein, family 15 Arabidopsis thaliana
metallothionein 4b		 -0.55 0.32 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
98 C0057 Anthranilic acid - Anthranilate tryptophan biosynthesis,
benzoylanthranilate biosynthesis 		-0.76 0.46 -0.45 C0057
99 C0188 Nicotine (-)-Nicotine Nicotine - -0.7 0.46 -0.46 C0188
100 C0052 Adenosine - Adenosine adenine and adenosine salvage VI,
S-adenosyl-L-methionine cycle II,
cytokinins degradation,
methionine degradation I (to homocysteine),
adenine and adenosine salvage II 		-0.68 0.32 -0.32 C0052
101 C0137 Leucine L-Leucine L-Leucine indole-3-acetyl-amino acid biosynthesis,
leucine biosynthesis,
jasmonoyl-amino acid conjugates biosynthesis I,
IAA biosynthesis II,
tRNA charging,
leucine degradation I 		-0.64 0.32 -0.32 C0137
102 C0022 1,4-Butanediamine - Putrescine spermine and spermidine degradation III,
putrescine degradation IV,
superpathway of polyamine biosynthesis,
putrescine biosynthesis II,
spermidine biosynthesis I,
putrescine biosynthesis I 		-0.59 0.32 -0.31 C0022
103 C0216 Proline L-Proline L-Proline proline degradation II,
arginine degradation VI (arginase 2 pathway),
L-Ndelta-acetylornithine biosynthesis,
tRNA charging,
citrulline biosynthesis,
proline biosynthesis III 		-0.59 0.33 -0.3 C0216
104 C0140 Lysine L-Lysine L-Lysine lysine degradation II,
tRNA charging,
lysine biosynthesis VI,
lysine degradation I 		-0.57 0.31 -0.31 C0140