AT3G08000 : -
Query Information
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AGICode AT3G08000
Description RNA-binding (RRM/RBD/RNP motifs) family protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G08000 RNA-binding (RRM/RBD/RNP motifs) family protein 1 0.35 -0.3
2 AT1G06700 Protein kinase superfamily protein 0.69 0.31 -0.3
3 AT3G58760 Integrin-linked protein kinase family 0.66 0.31 -0.31
4 AT5G14760 L-aspartate oxidase L-aspartate oxidase 0.64 0.34 -0.32
5 AT3G18300 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G48780.1); Has 69 Blast hits
to 69 proteins in 7 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 69; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.63 0.29 -0.32
6 AT3G09970 Calcineurin-like metallo-phosphoesterase superfamily
protein		 0.63 0.31 -0.31
7 AT1G06150 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 EMBRYO DEFECTIVE 1444 0.62 0.3 -0.3
8 AT3G13670 Protein kinase family protein 0.62 0.31 -0.33
9 AT2G23890 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase 0.61 0.31 -0.35
10 AT2G38080 Laccase/Diphenol oxidase family protein ARABIDOPSIS LACCASE-LIKE
MULTICOPPER OXIDASE 4, IRREGULAR
XYLEM 12, LACCASE 4, LACCASE-LIKE
MULTICOPPER OXIDASE 4		 -0.59 0.32 -0.3
11 AT1G50140 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.59 0.31 -0.32
12 AT4G21400 cysteine-rich RLK (RECEPTOR-like protein kinase) 28 cysteine-rich RLK (RECEPTOR-like
protein kinase) 28		 0.59 0.32 -0.31
13 AT5G46020 CONTAINS InterPro DOMAIN/s: Casein kinase substrate,
phosphoprotein PP28 (InterPro:IPR019380); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.59 0.34 -0.3
14 AT3G08730 protein-serine kinase 1 ARABIDOPSIS THALIANA
PROTEIN-SERINE KINASE 1,
ARABIDOPSIS THALIANA
PROTEIN-SERINE KINASE 6, ATS6K1,
protein-serine kinase 1,
ROTEIN-SERINE KINASE 6, P70
RIBOSOMAL S6 KINASE		 0.59 0.32 -0.31
15 AT1G25380 NAD+ transporter 2 ARABIDOPSIS THALIANA NAD+
TRANSPORTER 2, NAD+ transporter 2		 0.59 0.31 -0.3
16 AT5G24610 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G49550.1); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 -0.58 0.33 -0.34
17 AT2G28760 UDP-XYL synthase 6 UDP-XYL synthase 6 -0.58 0.31 -0.3
18 AT2G25780 Protein of unknown function (DUF1677) 0.58 0.3 -0.31
19 AT1G12830 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; Has 39778
Blast hits to 22088 proteins in 1060 species: Archae - 152;
Bacteria - 6161; Metazoa - 14109; Fungi - 6144; Plants -
2156; Viruses - 601; Other Eukaryotes - 10455 (source: NCBI
BLink).		 0.58 0.31 -0.32
20 AT1G16650 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.57 0.3 -0.3
21 AT5G09380 RNA polymerase III RPC4 0.57 0.33 -0.31
22 AT1G27240 Paired amphipathic helix (PAH2) superfamily protein 0.57 0.33 -0.31
23 AT1G55915 zinc ion binding 0.56 0.32 -0.32
24 AT3G05370 receptor like protein 31 receptor like protein 31, receptor
like protein 31		 0.56 0.31 -0.34
25 AT3G09160 RNA-binding (RRM/RBD/RNP motifs) family protein 0.56 0.32 -0.31
26 AT3G10960 AZA-guanine resistant1 AZA-guanine resistant1,
AZA-guanine resistant1		 -0.56 0.34 -0.32
27 AT1G09680 Pentatricopeptide repeat (PPR) superfamily protein 0.56 0.33 -0.32
28 AT3G62080 SNF7 family protein 0.56 0.32 -0.3
29 AT1G77780 Glycosyl hydrolase superfamily protein 0.55 0.33 -0.32
30 AT1G08960 cation exchanger 11 CATION EXCHANGER 11, Arabidopsis
thaliana cation calcium exchanger
5, cation exchanger 11, cation
calcium exchanger 5		 0.55 0.32 -0.3
31 AT4G20140 Leucine-rich repeat transmembrane protein kinase GASSHO1 -0.55 0.33 -0.32
32 AT5G54690 galacturonosyltransferase 12 galacturonosyltransferase 12,
IRREGULAR XYLEM 8, LGT6		 -0.54 0.32 -0.29
33 AT2G02580 cytochrome P450, family 71, subfamily B, polypeptide 9 cytochrome P450, family 71,
subfamily B, polypeptide 9		 -0.54 0.31 -0.32
34 AT2G04070 MATE efflux family protein 0.54 0.32 -0.3
35 AT1G45130 beta-galactosidase 5 beta-galactosidase 5 -0.53 0.31 -0.31
36 AT3G32040 Terpenoid synthases superfamily protein -0.53 0.32 -0.32
37 AT1G51730 Ubiquitin-conjugating enzyme family protein 0.53 0.3 -0.32
38 AT4G17620 glycine-rich protein 0.53 0.31 -0.3
39 AT5G02770 unknown protein; Has 469 Blast hits to 336 proteins in 126
species: Archae - 0; Bacteria - 54; Metazoa - 249; Fungi -
22; Plants - 47; Viruses - 0; Other Eukaryotes - 97
(source: NCBI BLink).		 modifier of snc1, 11 0.53 0.31 -0.32
40 AT3G42990 unknown protein; Has 1 Blast hits to 1 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.52 0.32 -0.33
41 AT1G35890 NAC (No Apical Meristem) domain transcriptional regulator
superfamily protein		 0.52 0.32 -0.34
42 AT1G07330 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G29620.1); Has 597 Blast hits
to 536 proteins in 121 species: Archae - 2; Bacteria - 47;
Metazoa - 170; Fungi - 43; Plants - 98; Viruses - 0; Other
Eukaryotes - 237 (source: NCBI BLink).		 0.52 0.31 -0.31
43 AT1G67540 unknown protein; Has 18 Blast hits to 18 proteins in 7
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.52 0.31 -0.31
44 AT1G30660 nucleic acid binding;nucleic acid binding 0.52 0.29 -0.31
45 AT3G43950 Protein kinase superfamily protein 0.52 0.33 -0.32
46 AT3G26390 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G39782.1); Has 16 Blast hits
to 16 proteins in 4 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.52 0.32 -0.3
47 AT1G10000 Ribonuclease H-like superfamily protein -0.51 0.31 -0.34
48 AT1G27190 Leucine-rich repeat protein kinase family protein -0.5 0.31 -0.31
49 AT5G58820 Subtilisin-like serine endopeptidase family protein -0.49 0.31 -0.3
50 AT4G15500 UDP-Glycosyltransferase superfamily protein UGT84A4 -0.49 0.31 -0.33
51 AT3G11920 glutaredoxin-related -0.49 0.31 -0.32
52 AT4G11020 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; LOCATED IN:
cellular_component unknown; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT4G23870.1); Has
1807 Blast hits to 1807 proteins in 277 species: Archae -
0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).		 -0.49 0.31 -0.31
53 AT3G20015 Eukaryotic aspartyl protease family protein -0.48 0.31 -0.32
54 AT2G28755 UDP-D-glucuronate carboxy-lyase-related -0.47 0.33 -0.31
55 ATMG00890 hypothetical protein ORF106D -0.44 0.29 -0.32
56 AT2G28010 Eukaryotic aspartyl protease family protein -0.44 0.33 -0.3
57 AT4G31260 unknown protein; Has 2 Blast hits to 2 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.44 0.33 -0.32
58 AT2G34870 hydroxyproline-rich glycoprotein family protein maternal effect embryo arrest 26 -0.44 0.32 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
59 C0218 Pyridoxamine phosphate Pyridoxamine-5'-phosphate Pyridoxamine-5'-phosphate pyridoxal 5'-phosphate salvage pathway -0.54 0.31 -0.32 C0218
60 C0022 1,4-Butanediamine - Putrescine spermine and spermidine degradation III,
putrescine degradation IV,
superpathway of polyamine biosynthesis,
putrescine biosynthesis II,
spermidine biosynthesis I,
putrescine biosynthesis I 		-0.52 0.33 -0.32 C0022
61 C0061 Aspartic acid L-Aspartic acid L-Aspartate purine nucleotide metabolism (phosphotransfer and nucleotide modification),
tRNA charging,
indole-3-acetyl-amino acid biosynthesis,
citrulline-nitric oxide cycle,
asparagine degradation I,
cyanide detoxification II,
asparagine biosynthesis I,
asparagine biosynthesis III (tRNA-dependent),
arginine biosynthesis I,
inosine-5'-phosphate biosynthesis II,
uridine-5'-phosphate biosynthesis,
aspartate biosynthesis,
homoserine biosynthesis,
lysine biosynthesis VI,
aspartate degradation II,
urea cycle,
purine nucleotides de novo biosynthesis II,
NAD biosynthesis I (from aspartate),
IAA degradation IV,
arginine biosynthesis II (acetyl cycle) 		-0.49 0.33 -0.3 C0061