AT3G09650 : CRM3
Query Information
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AGICode AT3G09650
Description Tetratricopeptide repeat (TPR)-like superfamily protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G09650 Tetratricopeptide repeat (TPR)-like superfamily protein CRM3, HIGH CHLOROPHYLL
FLUORESCENCE 152		 1 0.3 -0.34
2 AT1G14580 C2H2-like zinc finger protein 0.76 0.3 -0.32
3 AT3G12280 retinoblastoma-related 1 RETINOBLASTOMA-RELATED PROTEIN 1,
RB, RETINOBLASTOMA 1,
RETINOBLASTOMA-RELATED,
retinoblastoma-related 1		 0.75 0.31 -0.3
4 AT3G60910 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.74 0.32 -0.32
5 AT4G18390 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor
2		 TCP2, TEOSINTE BRANCHED 1,
cycloidea and PCF transcription
factor 2		 0.74 0.35 -0.34
6 AT2G21320 B-box zinc finger family protein 0.71 0.32 -0.33
7 AT2G02080 indeterminate(ID)-domain 4 indeterminate(ID)-domain 4,
indeterminate(ID)-domain 4		 0.71 0.32 -0.31
8 AT2G28720 Histone superfamily protein 0.7 0.3 -0.31
9 AT5G10630 Translation elongation factor EF1A/initiation factor
IF2gamma family protein		 0.69 0.31 -0.33
10 AT1G48120 hydrolases;protein serine/threonine phosphatases 0.69 0.32 -0.33
11 AT4G18520 Pentatricopeptide repeat (PPR) superfamily protein 0.68 0.32 -0.3
12 AT4G14605 Mitochondrial transcription termination factor family
protein		 0.68 0.32 -0.31
13 AT1G73710 Pentatricopeptide repeat (PPR) superfamily protein 0.68 0.32 -0.31
14 AT2G28550 related to AP2.7 related to AP2.7, TARGET OF EARLY
ACTIVATION TAGGED (EAT) 1		 0.67 0.33 -0.33
15 AT1G54850 HSP20-like chaperones superfamily protein -0.67 0.33 -0.3
16 AT1G47530 MATE efflux family protein 0.67 0.3 -0.32
17 AT3G47500 cycling DOF factor 3 cycling DOF factor 3 0.67 0.33 -0.32
18 AT5G02810 pseudo-response regulator 7 APRR7, pseudo-response regulator 7 0.66 0.31 -0.32
19 AT5G16380 Protein of unknown function, DUF538 0.66 0.32 -0.32
20 AT5G62350 Plant invertase/pectin methylesterase inhibitor superfamily
protein		 0.65 0.32 -0.29
21 AT1G53590 Calcium-dependent lipid-binding (CaLB domain) family
protein		 NTMC2T6.1, NTMC2TYPE6.1 0.65 0.3 -0.33
22 AT1G17665 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 15 plant structures;
EXPRESSED DURING: 11 growth stages; Has 149 Blast hits to
146 proteins in 39 species: Archae - 0; Bacteria - 4;
Metazoa - 21; Fungi - 5; Plants - 30; Viruses - 0; Other
Eukaryotes - 89 (source: NCBI BLink).		 0.65 0.34 -0.33
23 AT2G46830 circadian clock associated 1 AtCCA1, circadian clock associated
1		 0.65 0.3 -0.31
24 AT1G51610 Cation efflux family protein 0.65 0.32 -0.32
25 AT1G27930 Protein of unknown function (DUF579) 0.65 0.32 -0.32
26 AT1G17110 ubiquitin-specific protease 15 ubiquitin-specific protease 15 0.65 0.3 -0.31
27 AT1G47240 NRAMP metal ion transporter 2 ATNRAMP2, NRAMP metal ion
transporter 2		 0.65 0.31 -0.31
28 AT1G63850 BTB/POZ domain-containing protein 0.64 0.35 -0.31
29 AT1G02330 CONTAINS InterPro DOMAIN/s: Hepatocellular
carcinoma-associated antigen 59 (InterPro:IPR010756); Has
1239 Blast hits to 998 proteins in 204 species: Archae - 4;
Bacteria - 71; Metazoa - 421; Fungi - 109; Plants - 87;
Viruses - 5; Other Eukaryotes - 542 (source: NCBI BLink).		 0.64 0.31 -0.3
30 AT2G01820 Leucine-rich repeat protein kinase family protein 0.64 0.33 -0.33
31 AT1G04860 ubiquitin-specific protease 2 ATUBP2, ubiquitin-specific
protease 2		 0.64 0.33 -0.32
32 AT1G18900 Pentatricopeptide repeat (PPR) superfamily protein 0.63 0.31 -0.3
33 AT3G24190 Protein kinase superfamily protein 0.63 0.33 -0.33
34 AT5G62930 SGNH hydrolase-type esterase superfamily protein -0.62 0.32 -0.3
35 AT2G33500 B-box type zinc finger protein with CCT domain 0.62 0.31 -0.32
36 AT5G07180 ERECTA-like 2 ERECTA-like 2 0.62 0.33 -0.31
37 AT5G56610 Phosphotyrosine protein phosphatases superfamily protein -0.62 0.29 -0.31
38 AT1G22610 C2 calcium/lipid-binding plant phosphoribosyltransferase
family protein		 0.62 0.3 -0.31
39 AT5G58110 chaperone binding;ATPase activators -0.62 0.3 -0.3
40 AT3G26640 Transducin/WD40 repeat-like superfamily protein LIGHT-REGULATED WD 2 0.62 0.33 -0.28
41 AT5G46070 Guanylate-binding family protein 0.62 0.33 -0.31
42 AT2G39940 RNI-like superfamily protein CORONATINE INSENSITIVE 1 0.61 0.32 -0.34
43 AT5G44920 Toll-Interleukin-Resistance (TIR) domain family protein -0.61 0.31 -0.29
44 AT1G06000 UDP-Glycosyltransferase superfamily protein 0.61 0.31 -0.33
45 AT5G35430 Tetratricopeptide repeat (TPR)-like superfamily protein 0.61 0.33 -0.32
46 AT5G27710 unknown protein; Has 49 Blast hits to 49 proteins in 17
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 48; Viruses - 0; Other Eukaryotes - 1 (source:
NCBI BLink).		 -0.6 0.32 -0.33
47 AT3G13845 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 15 growth stages; Has 22 Blast hits to 22
proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 -0.6 0.31 -0.32
48 AT2G20480 unknown protein; Has 19 Blast hits to 19 proteins in 10
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.6 0.32 -0.34
49 AT5G60170 RNA binding (RRM/RBD/RNP motifs) family protein 0.6 0.31 -0.34
50 AT2G02960 RING/FYVE/PHD zinc finger superfamily protein -0.6 0.31 -0.31
51 AT1G52240 RHO guanyl-nucleotide exchange factor 11 ATROPGEF11, phytochrome
interacting RopGEF 1, RHO
guanyl-nucleotide exchange factor
11		 -0.6 0.31 -0.3
52 AT5G06180 Protein of unknown function (DUF1022) -0.59 0.29 -0.32
53 AT4G27820 beta glucosidase 9 beta glucosidase 9 0.59 0.3 -0.32
54 AT3G17300 unknown protein; Has 48 Blast hits to 48 proteins in 21
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 40; Viruses - 0; Other Eukaryotes - 8 (source:
NCBI BLink).		 At3g17300 -0.59 0.31 -0.34
55 AT5G51170 unknown protein; CONTAINS InterPro DOMAIN/s:
Uncharacterised protein family UPF0406
(InterPro:IPR019146); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 -0.59 0.33 -0.31
56 AT3G14800 transposable element gene 0.59 0.32 -0.33
57 AT3G61460 brassinosteroid-responsive RING-H2 brassinosteroid-responsive RING-H2 0.59 0.33 -0.31
58 AT2G35510 similar to RCD one 1 similar to RCD one 1 0.59 0.31 -0.33
59 AT4G23510 Disease resistance protein (TIR-NBS-LRR class) family -0.59 0.32 -0.32
60 AT2G43235 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 41 Blast hits to 41 proteins
in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 40; Viruses - 0; Other Eukaryotes - 1
(source: NCBI BLink).		 0.58 0.32 -0.33
61 AT1G13110 cytochrome P450, family 71 subfamily B, polypeptide 7 cytochrome P450, family 71
subfamily B, polypeptide 7		 0.58 0.32 -0.32
62 AT1G06450 Polynucleotidyl transferase, ribonuclease H-like
superfamily protein		 0.58 0.31 -0.34
63 AT3G27340 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
oxidation reduction; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 15 growth stages; CONTAINS InterPro
DOMAIN/s: Gamma-butyrobetaine dioxygenase/Trimethyllysine
dioxygenase, N-terminal (InterPro:IPR010376); Has 1035
Blast hits to 1035 proteins in 399 species: Archae - 0;
Bacteria - 765; Metazoa - 0; Fungi - 0; Plants - 39;
Viruses - 0; Other Eukaryotes - 231 (source: NCBI BLink).		 -0.57 0.34 -0.3
64 AT1G55520 TATA binding protein 2 A. THALIANA TATA BINDING PROTEIN
2, TATA binding protein 2		 -0.54 0.32 -0.32
65 AT3G09470 Major facilitator superfamily protein -0.54 0.3 -0.31
66 AT4G15780 vesicle-associated membrane protein 724 vesicle-associated membrane
protein 724, vesicle-associated
membrane protein 724		 -0.54 0.31 -0.33
67 AT1G22460 O-fucosyltransferase family protein -0.52 0.32 -0.32
68 AT2G29250 Concanavalin A-like lectin protein kinase family protein -0.52 0.31 -0.32
69 AT1G17710 Pyridoxal phosphate phosphatase-related protein Arabidopsis thaliana
phosphoethanolamine/phosphocholine
phosphatase 1,
phosphoethanolamine/phosphocholine
phosphatase 1		 -0.52 0.33 -0.31
70 AT3G16540 DegP protease 11 DegP protease 11 -0.51 0.31 -0.32
71 AT1G61100 disease resistance protein (TIR class), putative -0.5 0.32 -0.35
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
72 C0110 Guanosine - Guanosine guanosine nucleotides degradation I,
guanine and guanosine salvage II,
guanosine nucleotides degradation II,
guanine and guanosine salvage III 		0.72 0.47 -0.46 C0110