AT3G07590 : -
Query Information
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AGICode AT3G07590
Description Small nuclear ribonucleoprotein family protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT3G07590 Small nuclear ribonucleoprotein family protein 1 0.32 -0.33
2 AT3G60360 embryo sac development arrest 14 EMBRYO SAC DEVELOPMENT ARREST 14,
U3 SMALL NUCLEOLAR RNA-ASSOCIATED
PROTEIN 11		 0.85 0.31 -0.33
3 AT2G31410 unknown protein; Has 1719 Blast hits to 1091 proteins in
184 species: Archae - 5; Bacteria - 24; Metazoa - 559;
Fungi - 169; Plants - 192; Viruses - 1; Other Eukaryotes -
769 (source: NCBI BLink).		 0.84 0.3 -0.3
4 AT3G27280 prohibitin 4 prohibitin 4, prohibitin 4 0.83 0.33 -0.3
5 AT5G41010 DNA directed RNA polymerase, 7 kDa subunit NRPB12, NRPD12, NRPE12 0.83 0.33 -0.33
6 AT1G31010 organellar single-stranded DNA binding protein 4 organellar single-stranded DNA
binding protein 4		 0.83 0.29 -0.31
7 AT1G15480 Tetratricopeptide repeat (TPR)-like superfamily protein 0.82 0.33 -0.33
8 AT3G13160 Tetratricopeptide repeat (TPR)-like superfamily protein 0.82 0.33 -0.32
9 AT5G48070 xyloglucan endotransglucosylase/hydrolase 20 XYLOGLUCAN
ENDOTRANSGLUCOSYLASE/HYDROLASE 20,
xyloglucan
endotransglucosylase/hydrolase 20		 0.82 0.31 -0.31
10 AT3G55605 Mitochondrial glycoprotein family protein 0.82 0.32 -0.31
11 AT1G01940 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family
protein		 0.82 0.34 -0.32
12 AT2G40420 Transmembrane amino acid transporter family protein -0.81 0.34 -0.31
13 AT5G11630 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT4G17310.1); Has 90 Blast
hits to 90 proteins in 10 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.81 0.33 -0.28
14 AT2G44820 unknown protein; Has 70 Blast hits to 70 proteins in 25
species: Archae - 0; Bacteria - 0; Metazoa - 9; Fungi - 4;
Plants - 47; Viruses - 0; Other Eukaryotes - 10 (source:
NCBI BLink).		 0.8 0.31 -0.31
15 AT2G44510 CDK inhibitor P21 binding protein 0.8 0.32 -0.31
16 AT3G51830 SAC domain-containing protein 8 ATG5, SAC domain-containing
protein 8		 -0.79 0.33 -0.34
17 AT1G15060 Uncharacterised conserved protein UCP031088, alpha/beta
hydrolase		 -0.79 0.32 -0.33
18 AT2G39795 Mitochondrial glycoprotein family protein 0.79 0.32 -0.32
19 AT3G05060 NOP56-like pre RNA processing ribonucleoprotein 0.79 0.34 -0.31
20 AT4G34360 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.79 0.31 -0.32
21 AT1G63240 unknown protein; Has 460 Blast hits to 413 proteins in 106
species: Archae - 5; Bacteria - 12; Metazoa - 152; Fungi -
46; Plants - 43; Viruses - 2; Other Eukaryotes - 200
(source: NCBI BLink).		 -0.78 0.3 -0.32
22 AT2G29540 RNApolymerase 14 kDa subunit ATRPAC14, RNApolymerase 14 kDa
subunit, RNApolymerase 14 kDa
subunit		 0.78 0.3 -0.29
23 AT2G20940 Protein of unknown function (DUF1279) 0.78 0.3 -0.33
24 AT5G62290 nucleotide-sensitive chloride conductance regulator (ICln)
family protein		 0.78 0.33 -0.33
25 AT4G30930 Ribosomal protein L21 NUCLEAR FUSION DEFECTIVE 1 0.78 0.31 -0.31
26 AT5G22840 Protein kinase superfamily protein 0.78 0.29 -0.34
27 AT1G03380 homolog of yeast autophagy 18 (ATG18) G homolog of yeast autophagy 18
(ATG18) G, homolog of yeast
autophagy 18 (ATG18) G		 -0.77 0.32 -0.31
28 AT3G23830 glycine-rich RNA-binding protein 4 AtGRP4, GR-RBP4, glycine-rich
RNA-binding protein 4		 0.77 0.31 -0.32
29 AT3G02190 Ribosomal protein L39 family protein 0.77 0.31 -0.3
30 AT3G55620 Translation initiation factor IF6 eukaryotic initiation facor 6A,
embryo defective 1624		 0.77 0.31 -0.32
31 AT5G11350 DNAse I-like superfamily protein -0.76 0.32 -0.31
32 AT4G22200 potassium transport 2/3 AKT2, potassium transport 2/3,
AKT3, potassium transport 2/3		 -0.76 0.3 -0.34
33 AT4G13850 glycine-rich RNA-binding protein 2 GLYCINE-RICH RNA-BINDING PROTEIN
2, glycine-rich RNA-binding
protein 2, glycine rich protein 2		 0.76 0.3 -0.32
34 AT5G43970 translocase of outer membrane 22-V ATTOM22-V, translocase of outer
membrane 22-V, TRANSLOCASE OUTER
MITOCHONDRIAL MEMBRANE 22-V		 0.76 0.3 -0.31
35 AT3G17465 ribosomal protein L3 plastid ribosomal protein L3 plastid 0.76 0.33 -0.31
36 AT5G64680 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
nucleolus; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; Has 114 Blast hits to 110
proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa -
42; Fungi - 10; Plants - 37; Viruses - 0; Other Eukaryotes
- 25 (source: NCBI BLink).		 0.75 0.3 -0.33
37 AT3G14600 Ribosomal protein L18ae/LX family protein 0.75 0.3 -0.33
38 AT5G09270 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.75 0.34 -0.32
39 AT2G31710 Vacuolar ATPase assembly integral membrane protein
VMA21-like domain		 0.75 0.33 -0.31
40 AT1G73170 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.75 0.32 -0.29
41 AT5G67630 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.75 0.31 -0.31
42 AT1G23100 GroES-like family protein 0.75 0.33 -0.31
43 AT1G03360 ribosomal RNA processing 4 ribosomal RNA processing 4,
ribosomal RNA processing 4		 0.75 0.32 -0.31
44 AT2G47640 Small nuclear ribonucleoprotein family protein 0.75 0.31 -0.33
45 AT1G14060 GCK domain-containing protein 0.74 0.32 -0.33
46 AT3G18940 clast3-related 0.74 0.31 -0.32
47 AT2G18740 Small nuclear ribonucleoprotein family protein 0.74 0.32 -0.32
48 AT1G72190 D-isomer specific 2-hydroxyacid dehydrogenase family
protein		 -0.74 0.32 -0.3
49 AT5G53400 HSP20-like chaperones superfamily protein BOBBER1 0.74 0.3 -0.32
50 AT5G16930 AAA-type ATPase family protein 0.74 0.31 -0.31
51 AT5G04600 RNA-binding (RRM/RBD/RNP motifs) family protein 0.74 0.31 -0.3
52 AT3G56140 Protein of unknown function (DUF399 and DUF3411) -0.74 0.29 -0.34
53 AT1G54160 nuclear factor Y, subunit A5 nuclear factor Y, subunit A5,
NUCLEAR FACTOR Y A5		 -0.74 0.3 -0.31
54 AT1G80720 Mitochondrial glycoprotein family protein 0.74 0.32 -0.3
55 AT5G39580 Peroxidase superfamily protein 0.73 0.31 -0.3
56 AT5G56500 TCP-1/cpn60 chaperonin family protein chaperonin-60beta3 0.73 0.32 -0.31
57 AT1G73750 Uncharacterised conserved protein UCP031088, alpha/beta
hydrolase		 -0.73 0.3 -0.32
58 AT2G40830 RING-H2 finger C1A RING-H2 finger C1A -0.73 0.31 -0.31
59 AT5G40590 Cysteine/Histidine-rich C1 domain family protein 0.73 0.31 -0.32
60 AT5G19350 RNA-binding (RRM/RBD/RNP motifs) family protein 0.73 0.29 -0.3
61 AT3G09600 Homeodomain-like superfamily protein LHY-CCA1-LIKE5, REVEILLE 8 -0.73 0.33 -0.3
62 AT2G33210 heat shock protein 60-2 heat shock protein 60-2 0.73 0.32 -0.3
63 AT4G15640 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G21465.1); Has 38 Blast hits
to 38 proteins in 14 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.73 0.32 -0.31
64 AT4G35050 Transducin family protein / WD-40 repeat family protein MULTICOPY SUPPRESSOR OF IRA1 3,
NUCLEOSOME/CHROMATIN ASSEMBLY
FACTOR GROUP C 3		 0.72 0.31 -0.31
65 AT5G53770 Nucleotidyltransferase family protein 0.72 0.33 -0.33
66 AT3G14290 20S proteasome alpha subunit E2 20S proteasome alpha subunit E2 0.72 0.29 -0.3
67 AT3G12130 KH domain-containing protein / zinc finger (CCCH type)
family protein		 0.72 0.34 -0.32
68 AT4G00750 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.71 0.32 -0.28
69 AT5G16150 plastidic GLC translocator GLUCOSE TRANSPORTER 1, plastidic
GLC translocator		 -0.71 0.28 -0.31
70 AT2G35050 Protein kinase superfamily protein with
octicosapeptide/Phox/Bem1p domain		 -0.71 0.31 -0.3
71 AT4G16750 Integrase-type DNA-binding superfamily protein -0.71 0.33 -0.33
72 AT4G37270 heavy metal atpase 1 ARABIDOPSIS THALIANA HEAVY METAL
ATPASE 1, heavy metal atpase 1		 -0.7 0.32 -0.33
73 AT4G29890 choline monooxygenase, putative (CMO-like) -0.7 0.31 -0.31
74 AT5G66110 Heavy metal transport/detoxification superfamily protein heavy metal associated
isoprenylated plant protein 27		 -0.7 0.31 -0.33
75 AT3G10420 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 SEEDLING PLASTID DEVELOPMENT 1 -0.69 0.31 -0.32
76 AT1G19835 Plant protein of unknown function (DUF869) -0.69 0.34 -0.31
77 AT1G16730 unknown protein 6 unknown protein 6 -0.69 0.34 -0.32
78 AT1G55460 DNA/RNA-binding protein Kin17, conserved region -0.68 0.32 -0.32
79 AT4G04740 calcium-dependent protein kinase 23 ATCPK23, calcium-dependent protein
kinase 23		 -0.68 0.31 -0.31
80 AT3G02050 K+ uptake transporter 3 ARABIDOPSIS THALIANA POTASSIUM
TRANSPORTER 4, ATKUP3, K+ uptake
transporter 3		 -0.68 0.33 -0.29
81 AT1G09010 glycoside hydrolase family 2 protein -0.68 0.33 -0.29
82 ATCG00560 photosystem II reaction center protein L photosystem II reaction center
protein L		 -0.67 0.32 -0.33
83 AT3G63520 carotenoid cleavage dioxygenase 1 CAROTENOID CLEAVAGE DIOXYGENASE 1,
ATNCED1, carotenoid cleavage
dioxygenase 1, NCED1		 -0.67 0.32 -0.31
84 AT4G30993 Calcineurin-like metallo-phosphoesterase superfamily
protein		 -0.67 0.32 -0.34
85 AT5G07250 RHOMBOID-like protein 3 RHOMBOID-like protein 3,
RHOMBOID-like protein 3		 -0.67 0.33 -0.33
86 AT3G23590 REF4-related 1 MED33A, REF4-related 1 -0.66 0.33 -0.31
87 AT3G09600 Homeodomain-like superfamily protein LHY-CCA1-LIKE5, REVEILLE 8 -0.66 0.32 -0.3
88 AT2G31960 glucan synthase-like 3 glucan synthase-like 3, ATGSL3,
GSL03, glucan synthase-like 3		 -0.65 0.32 -0.32
89 AT4G18020 CheY-like two-component responsive regulator family protein APRR2, PSEUDO-RESPONSE REGULATOR 2 -0.65 0.31 -0.32
90 AT1G29240 Protein of unknown function (DUF688) -0.65 0.3 -0.32
91 AT5G27950 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.65 0.31 -0.31
92 AT5G37360 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast thylakoid membrane, chloroplast; EXPRESSED IN:
23 plant structures; EXPRESSED DURING: 13 growth stages;
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants -
385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI
BLink).		 -0.65 0.33 -0.32
93 AT3G59300 Pentatricopeptide repeat (PPR) superfamily protein -0.65 0.31 -0.33
94 AT5G64280 dicarboxylate transporter 2.2 dicarboxylate transporter 2.2 -0.65 0.3 -0.3
95 AT1G53670 methionine sulfoxide reductase B 1 ATMSRB1, methionine sulfoxide
reductase B 1		 -0.65 0.33 -0.33
96 AT4G26980 RNI-like superfamily protein -0.65 0.3 -0.31
97 AT1G54230 Winged helix-turn-helix transcription repressor DNA-binding -0.65 0.29 -0.29
98 AT4G21650 Subtilase family protein -0.64 0.3 -0.33
99 AT1G05200 glutamate receptor 3.4 glutamate receptor 3.4, glutamate
receptor 3.4, GLUR3		 -0.64 0.33 -0.31
100 AT2G25080 glutathione peroxidase 1 GLUTATHIONE PEROXIDASE 1,
glutathione peroxidase 1		 -0.64 0.32 -0.31
101 AT1G09510 NAD(P)-binding Rossmann-fold superfamily protein -0.64 0.31 -0.33
102 AT5G14510 ARM repeat superfamily protein -0.64 0.33 -0.31
103 AT3G13672 TRAF-like superfamily protein -0.64 0.34 -0.3
104 AT1G02020 nitroreductase family protein -0.63 0.31 -0.31
105 AT1G02700 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT4G02140.1); Has 49 Blast hits to 49
proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa -
10; Fungi - 6; Plants - 29; Viruses - 0; Other Eukaryotes -
4 (source: NCBI BLink).		 -0.63 0.33 -0.29
106 AT3G30300 O-fucosyltransferase family protein -0.63 0.31 -0.3
107 AT5G45090 phloem protein 2-A7 phloem protein 2-A7, phloem
protein 2-A7		 -0.63 0.31 -0.3
108 AT3G01370 CRM family member 2 Arabidopsis thaliana CRM family
member 2, CRM family member 2		 -0.63 0.3 -0.34
109 AT3G47000 Glycosyl hydrolase family protein -0.63 0.32 -0.33
110 AT3G03620 MATE efflux family protein -0.62 0.32 -0.3
111 AT5G05220 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.62 0.32 -0.3
112 AT1G07080 Thioredoxin superfamily protein -0.62 0.31 -0.31
113 AT4G26490 Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family		 -0.62 0.32 -0.32
114 AT1G33070 MADS-box family protein -0.62 0.3 -0.32
115 AT2G14080 Disease resistance protein (TIR-NBS-LRR class) family -0.62 0.31 -0.31
116 AT5G02480 HSP20-like chaperones superfamily protein -0.62 0.3 -0.33
117 ATCG00550 photosystem II reaction center protein J photosystem II reaction center
protein J		 -0.62 0.3 -0.31
118 AT3G60180 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.62 0.3 -0.33
119 AT2G26690 Major facilitator superfamily protein -0.62 0.31 -0.32
120 AT3G22490 Seed maturation protein -0.62 0.33 -0.3
121 AT1G54360 TBP-ASSOCIATED FACTOR 6B TBP-ASSOCIATED FACTOR 6B,
TBP-ASSOCIATED FACTOR 6B1,
TBP-ASSOCIATED FACTOR 6B2,
TBP-associated factor 6B4		 -0.62 0.32 -0.34
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
122 C0053 ADP - ADP phosphatidylcholine biosynthesis I,
mannitol degradation II,
lipid IVA biosynthesis,
stachyose degradation,
Rubisco shunt,
copper transport II,
glycerol degradation IV,
chorismate biosynthesis,
folate polyglutamylation II,
galactose degradation III,
D-myo-inositol (1,4,5)-trisphosphate biosynthesis,
UDP-L-arabinose biosynthesis II (from L-arabinose),
cadmium transport I,
folate polyglutamylation,
coenzyme A biosynthesis,
sulfate activation for sulfonation,
1,4-dihydroxy-2-naphthoate biosynthesis II (plants),
pyrimidine deoxyribonucleotides de novo biosynthesis I,
galactose degradation II,
inosine-5'-phosphate biosynthesis II,
ribose degradation,
acetyl-CoA biosynthesis (from citrate),
inositol pyrophosphates biosynthesis,
fatty acid biosynthesis initiation I,
xylose degradation I,
adenine and adenosine salvage VI,
TCA cycle variation III (eukaryotic),
tetrahydrofolate biosynthesis II,
phosphatidylethanolamine biosynthesis II,
pyridoxal 5'-phosphate salvage pathway,
citrulline biosynthesis,
trans-zeatin biosynthesis,
glutamine biosynthesis I,
arginine biosynthesis II (acetyl cycle),
L-Ndelta-acetylornithine biosynthesis,
mevalonate pathway I,
methionine biosynthesis II,
trehalose degradation II (trehalase),
citrulline degradation,
methionine salvage pathway,
TCA cycle variation V (plant),
chlorophyllide a biosynthesis I,
starch degradation I,
methylerythritol phosphate pathway,
pyridine nucleotide cycling (plants),
ceramide degradation,
biotin-carboxyl carrier protein assembly,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
UDP-D-galacturonate biosynthesis II (from D-galacturonate),
asparagine biosynthesis III (tRNA-dependent),
superpathway of glyoxylate cycle and fatty acid degradation,
NAD/NADH phosphorylation and dephosphorylation,
1D-myo-inositol hexakisphosphate biosynthesis V (from Ins(1,3,4)P3),
galactose degradation I (Leloir pathway),
uridine-5'-phosphate biosynthesis,
lipid-dependent phytate biosynthesis II (via Ins(1,3,4)P3),
sucrose degradation III,
lysine biosynthesis VI,
sphingolipid biosynthesis (plants),
choline biosynthesis I,
GDP-glucose biosynthesis,
photorespiration,
gamma-glutamyl cycle (plant pathway),
5-aminoimidazole ribonucleotide biosynthesis I,
gamma-glutamyl cycle,
thiamine biosynthesis II,
proline biosynthesis III,
glutathione biosynthesis,
folate transformations II,
ornithine biosynthesis,
diphthamide biosynthesis,
S-methyl-5'-thioadenosine degradation I,
starch biosynthesis,
arginine biosynthesis I,
homoserine biosynthesis,
flavin biosynthesis I (bacteria and plants),
sucrose biosynthesis I,
leucine degradation I,
glycolysis I,
pyrimidine ribonucleotides interconversion,
1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza),
glycolysis IV (plant cytosol),
Calvin-Benson-Bassham cycle,
UDP-D-glucuronate biosynthesis (from myo-inositol),
guanine and guanosine salvage III,
glutamine biosynthesis III,
L-glutamine biosynthesis II (tRNA-dependent),
GDP-L-fucose biosynthesis II (from L-fucose),
nitrate reduction II (assimilatory),
ammonia assimilation cycle II,
gluconeogenesis I,
threonine biosynthesis from homoserine,
mannose degradation,
urea cycle,
lipid-dependent phytate biosynthesis I (via Ins(1,4,5)P3),
biotin biosynthesis II 		-0.65 0.42 -0.47 C0053