AT1G12775 : -
Query Information
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AGICode AT1G12775
Description Pentatricopeptide repeat (PPR) superfamily protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT1G12775 Pentatricopeptide repeat (PPR) superfamily protein 1 0.33 -0.3
2 AT3G09380 Protein of unknown function (DUF59) -0.76 0.32 -0.33
3 AT3G09430 unknown protein; Has 17 Blast hits to 17 proteins in 7
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.71 0.35 -0.32
4 AT4G36290 compromised recognition of TCV 1 compromised recognition of TCV 1 0.69 0.32 -0.32
5 AT4G17486 PPPDE putative thiol peptidase family protein -0.68 0.32 -0.33
6 AT4G04930 fatty acid desaturase family protein DES-1-LIKE 0.65 0.31 -0.29
7 AT5G61605 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; EXPRESSED IN: petal, leaf whorl, sepal, flower;
EXPRESSED DURING: 4 anthesis, petal differentiation and
expansion stage; BEST Arabidopsis thaliana protein match
is: Maternally expressed gene (MEG) family protein
(TAIR:AT2G16505.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink).		 -0.65 0.31 -0.32
8 AT1G74310 heat shock protein 101 heat shock protein 101, HOT1, heat
shock protein 101		 0.64 0.32 -0.32
9 AT4G21070 breast cancer susceptibility1 ARABIDOPSIS THALIANA BREAST CANCER
SUSCEPTIBILITY1, breast cancer
susceptibility1		 0.63 0.32 -0.32
10 AT4G09110 RING/U-box superfamily protein 0.62 0.31 -0.31
11 AT3G45590 splicing endonuclease 1 splicing endonuclease 1, splicing
endonuclease 1		 -0.62 0.33 -0.32
12 AT1G46912 F-box associated ubiquitination effector family protein 0.61 0.33 -0.33
13 AT5G62950 RNA polymerase II, Rpb4, core protein -0.6 0.29 -0.32
14 AT3G43690 transposable element gene -0.6 0.31 -0.31
15 AT2G04680 Cysteine/Histidine-rich C1 domain family protein -0.59 0.31 -0.3
16 AT5G65330 AGAMOUS-like 78 AGAMOUS-like 78 0.59 0.31 -0.3
17 AT1G42700 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
response to cold; LOCATED IN: nucleus; BEST Arabidopsis
thaliana protein match is: Plant transposase (Ptta/En/Spm
family) (TAIR:AT1G40087.1); Has 10 Blast hits to 10
proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 0.59 0.33 -0.3
18 AT5G10230 annexin 7 ANNEXIN 7, annexin 7 -0.58 0.32 -0.33
19 AT2G36840 ACT-like superfamily protein ACT domain repeats 10 -0.58 0.32 -0.32
20 AT5G20520 alpha/beta-Hydrolases superfamily protein WAVY GROWTH 2 -0.58 0.33 -0.33
21 AT1G66080 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF775 (InterPro:IPR008493); Has 285 Blast
hits to 283 proteins in 133 species: Archae - 0; Bacteria -
0; Metazoa - 120; Fungi - 88; Plants - 50; Viruses - 0;
Other Eukaryotes - 27 (source: NCBI BLink).		 0.58 0.3 -0.32
22 AT3G22570 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.57 0.29 -0.31
23 AT2G22290 RAB GTPase homolog H1D ARABIDOPSIS RAB GTPASE HOMOLOG
H1D, ARABIDOPSIS RAB GTPASE
HOMOLOG 6, RAB GTPase homolog H1D,
RAB GTPASE HOMOLOG H1D, RAB GTPase
homolog H1D		 -0.57 0.33 -0.33
24 AT1G11880 transferases, transferring hexosyl groups -0.57 0.32 -0.31
25 AT4G05610 transposable element gene 0.57 0.31 -0.29
26 AT1G26590 C2H2-like zinc finger protein 0.57 0.31 -0.31
27 AT2G25070 Protein phosphatase 2C family protein -0.57 0.31 -0.3
28 AT5G22990 C2H2-like zinc finger protein 0.57 0.34 -0.32
29 AT3G59340 Eukaryotic protein of unknown function (DUF914) -0.57 0.33 -0.33
30 AT4G00280 BEST Arabidopsis thaliana protein match is: Leucine-rich
repeat transmembrane protein kinase protein
(TAIR:AT2G19210.1); Has 19 Blast hits to 19 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.57 0.34 -0.32
31 AT4G13230 Late embryogenesis abundant protein (LEA) family protein -0.56 0.33 -0.32
32 AT3G12140 Emsy N Terminus (ENT)/ plant Tudor-like domains-containing
protein		 AtEML1, EMSY-like 1 0.56 0.3 -0.32
33 AT2G10390 transposable element gene 0.56 0.31 -0.33
34 AT2G04380 unknown protein; Has 2 Blast hits to 2 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.56 0.3 -0.31
35 AT2G05170 vacuolar protein sorting 11 vacuolar protein sorting 11,
vacuolar protein sorting 11		 0.56 0.32 -0.32
36 AT3G52690 RNI-like superfamily protein 0.56 0.32 -0.29
37 AT2G41570 transposable element gene -0.56 0.3 -0.31
38 AT2G44950 histone mono-ubiquitination 1 histone mono-ubiquitination 1,
REDUCED DORMANCY 4		 -0.55 0.32 -0.33
39 AT5G57480 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.55 0.32 -0.29
40 AT2G10440 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G15780.1); Has 8319 Blast hits
to 5104 proteins in 317 species: Archae - 0; Bacteria -
285; Metazoa - 1706; Fungi - 535; Plants - 320; Viruses -
18; Other Eukaryotes - 5455 (source: NCBI BLink).		 0.55 0.32 -0.28
41 AT4G26560 calcineurin B-like protein 7 calcineurin B-like protein 7 -0.55 0.3 -0.32
42 AT3G24620 RHO guanyl-nucleotide exchange factor 8 ATROPGEF8, RHO guanyl-nucleotide
exchange factor 8		 0.54 0.35 -0.31
43 AT1G63670 Protein of unknown function (DUF3741) 0.54 0.32 -0.3
44 AT3G11440 myb domain protein 65 MYB DOMAIN PROTEIN 65, myb domain
protein 65		 -0.54 0.31 -0.31
45 AT2G12940 Basic-leucine zipper (bZIP) transcription factor family
protein		 unfertilized embryo sac 4 0.54 0.33 -0.32
46 AT5G03780 TRF-like 10 TRF-like 10 0.54 0.33 -0.31
47 AT4G09130 RING/U-box superfamily protein 0.54 0.3 -0.33
48 AT4G29630 Cytidine/deoxycytidylate deaminase family protein 0.53 0.31 -0.33
49 AT3G06630 protein kinase family protein 0.53 0.32 -0.31
50 AT3G22870 F-box and associated interaction domains-containing protein -0.53 0.3 -0.35
51 AT1G33475 SNARE-like superfamily protein -0.52 0.31 -0.3
52 AT1G28430 cytochrome P450, family 705, subfamily A, polypeptide 24 cytochrome P450, family 705,
subfamily A, polypeptide 24		 0.51 0.31 -0.29
53 AT4G14470 transposable element gene 0.51 0.32 -0.36
54 AT4G02310 Galactose oxidase/kelch repeat superfamily protein 0.51 0.31 -0.31
55 AT4G08880 transposable element gene 0.51 0.32 -0.31
56 AT1G31220 Formyl transferase 0.51 0.29 -0.32
57 AT3G49630 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 0.51 0.31 -0.3
58 AT2G19960 hAT family dimerisation domain 0.51 0.29 -0.32
59 AT2G36885 unknown protein; FUNCTIONS IN: molecular_function unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; Has 172 Blast hits to
172 proteins in 58 species: Archae - 0; Bacteria - 116;
Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other
Eukaryotes - 24 (source: NCBI BLink).		 0.51 0.31 -0.33
60 AT4G14720 TIFY domain/Divergent CCT motif family protein PEAPOD 2, TIFY4B -0.51 0.31 -0.31
61 AT1G35663 transposable element gene 0.51 0.34 -0.34
62 AT5G19560 ROP uanine nucleotide exchange factor 10 ARABIDOPSIS THALIANA ROP UANINE
NUCLEOTIDE EXCHANGE FACTOR 10, ROP
uanine nucleotide exchange factor
10		 0.51 0.34 -0.32
63 AT5G04720 ADR1-like 2 ADR1-like 2, PHOENIX 21 -0.5 0.3 -0.32
64 AT5G28940 transposable element gene 0.5 0.32 -0.32
65 AT2G22750 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 -0.5 0.31 -0.31
66 AT4G09690 Cysteine/Histidine-rich C1 domain family protein 0.5 0.33 -0.32
67 AT4G16820 alpha/beta-Hydrolases superfamily protein phospholipase A I beta 2 -0.49 0.31 -0.33
68 AT3G10990 F-box associated ubiquitination effector family protein -0.49 0.3 -0.33
69 AT3G62950 Thioredoxin superfamily protein -0.49 0.32 -0.32
70 AT5G29020 transposable element gene -0.49 0.3 -0.28
71 AT3G45700 Major facilitator superfamily protein -0.49 0.3 -0.3
72 AT2G04720 pseudogene, GTP-binding protein -related, similar to
GTP-binding protein GI:6624302 from (Carica papaya); blastp
match of 60% identity and 5.0e-31 P-value to
GP|6624302|dbj|BAA88497.1||AB035919 small GTP-binding
protein {Carica papaya}		 -0.48 0.3 -0.34
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
73 C0131 Kaempferol-3-O-β-glucopyranoside-7-O-α-rhamnopyranoside Kaempferol-3-O-β-D-glucopyranoside-7-O-α-L-rhamnopyranoside Kaempferol-3-glucoside-7-rhamnoside kaempferol glucoside biosynthesis (Arabidopsis) 0.8 0.48 -0.46 C0131
74 C0228 Ribose-5-phosphate D-Ribose-5-phosphate D-Ribose-5-phosphate PRPP biosynthesis I,
Calvin-Benson-Bassham cycle,
trans-zeatin biosynthesis,
pentose phosphate pathway (non-oxidative branch),
pyridine nucleotide cycling (plants),
Rubisco shunt,
ribose degradation,
pyridoxal 5'-phosphate biosynthesis II 		-0.79 0.46 -0.47 C0228
75 C0053 ADP - ADP phosphatidylcholine biosynthesis I,
mannitol degradation II,
lipid IVA biosynthesis,
stachyose degradation,
Rubisco shunt,
copper transport II,
glycerol degradation IV,
chorismate biosynthesis,
folate polyglutamylation II,
galactose degradation III,
D-myo-inositol (1,4,5)-trisphosphate biosynthesis,
UDP-L-arabinose biosynthesis II (from L-arabinose),
cadmium transport I,
folate polyglutamylation,
coenzyme A biosynthesis,
sulfate activation for sulfonation,
1,4-dihydroxy-2-naphthoate biosynthesis II (plants),
pyrimidine deoxyribonucleotides de novo biosynthesis I,
galactose degradation II,
inosine-5'-phosphate biosynthesis II,
ribose degradation,
acetyl-CoA biosynthesis (from citrate),
inositol pyrophosphates biosynthesis,
fatty acid biosynthesis initiation I,
xylose degradation I,
adenine and adenosine salvage VI,
TCA cycle variation III (eukaryotic),
tetrahydrofolate biosynthesis II,
phosphatidylethanolamine biosynthesis II,
pyridoxal 5'-phosphate salvage pathway,
citrulline biosynthesis,
trans-zeatin biosynthesis,
glutamine biosynthesis I,
arginine biosynthesis II (acetyl cycle),
L-Ndelta-acetylornithine biosynthesis,
mevalonate pathway I,
methionine biosynthesis II,
trehalose degradation II (trehalase),
citrulline degradation,
methionine salvage pathway,
TCA cycle variation V (plant),
chlorophyllide a biosynthesis I,
starch degradation I,
methylerythritol phosphate pathway,
pyridine nucleotide cycling (plants),
ceramide degradation,
biotin-carboxyl carrier protein assembly,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
UDP-D-galacturonate biosynthesis II (from D-galacturonate),
asparagine biosynthesis III (tRNA-dependent),
superpathway of glyoxylate cycle and fatty acid degradation,
NAD/NADH phosphorylation and dephosphorylation,
1D-myo-inositol hexakisphosphate biosynthesis V (from Ins(1,3,4)P3),
galactose degradation I (Leloir pathway),
uridine-5'-phosphate biosynthesis,
lipid-dependent phytate biosynthesis II (via Ins(1,3,4)P3),
sucrose degradation III,
lysine biosynthesis VI,
sphingolipid biosynthesis (plants),
choline biosynthesis I,
GDP-glucose biosynthesis,
photorespiration,
gamma-glutamyl cycle (plant pathway),
5-aminoimidazole ribonucleotide biosynthesis I,
gamma-glutamyl cycle,
thiamine biosynthesis II,
proline biosynthesis III,
glutathione biosynthesis,
folate transformations II,
ornithine biosynthesis,
diphthamide biosynthesis,
S-methyl-5'-thioadenosine degradation I,
starch biosynthesis,
arginine biosynthesis I,
homoserine biosynthesis,
flavin biosynthesis I (bacteria and plants),
sucrose biosynthesis I,
leucine degradation I,
glycolysis I,
pyrimidine ribonucleotides interconversion,
1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza),
glycolysis IV (plant cytosol),
Calvin-Benson-Bassham cycle,
UDP-D-glucuronate biosynthesis (from myo-inositol),
guanine and guanosine salvage III,
glutamine biosynthesis III,
L-glutamine biosynthesis II (tRNA-dependent),
GDP-L-fucose biosynthesis II (from L-fucose),
nitrate reduction II (assimilatory),
ammonia assimilation cycle II,
gluconeogenesis I,
threonine biosynthesis from homoserine,
mannose degradation,
urea cycle,
lipid-dependent phytate biosynthesis I (via Ins(1,4,5)P3),
biotin biosynthesis II 		-0.64 0.44 -0.44 C0053