AT1G48310 : CHA18
Query Information
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AGICode AT1G48310
Description chromatin remodeling factor18
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT1G48310 chromatin remodeling factor18 CHA18, chromatin remodeling
factor18		 1 0.32 -0.32
2 AT1G47250 20S proteasome alpha subunit F2 20S proteasome alpha subunit F2 -0.76 0.34 -0.32
3 AT5G20580 BEST Arabidopsis thaliana protein match is: FRIGIDA
interacting protein 1 (TAIR:AT2G06005.1); Has 167 Blast
hits to 167 proteins in 73 species: Archae - 0; Bacteria -
25; Metazoa - 58; Fungi - 25; Plants - 43; Viruses - 0;
Other Eukaryotes - 16 (source: NCBI BLink).		 -0.74 0.33 -0.31
4 AT3G22240 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G22235.2); Has 177 Blast hits
to 177 proteins in 14 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 177; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.74 0.3 -0.33
5 AT5G03370 acylphosphatase family -0.71 0.31 -0.32
6 AT1G65290 mitochondrial acyl carrier protein 2 mitochondrial acyl carrier protein
2		 -0.7 0.31 -0.32
7 AT1G31290 ARGONAUTE 3 ARGONAUTE 3 0.67 0.31 -0.3
8 AT4G11100 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G03060.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.66 0.32 -0.33
9 AT3G04740 RNA polymerase II transcription mediators ARABIDOPSIS MEDIATOR COMPONENTS
14, MEDIATOR COMPONENTS 14,
STRUWWELPETER		 0.65 0.33 -0.31
10 AT4G11410 NAD(P)-binding Rossmann-fold superfamily protein -0.65 0.31 -0.32
11 AT4G08960 phosphotyrosyl phosphatase activator (PTPA) family protein 0.64 0.3 -0.33
12 AT1G49950 telomere repeat binding factor 1 TELOMERE REPEAT BINDING FACTOR 1,
telomere repeat binding factor 1		 -0.64 0.3 -0.3
13 AT1G59900 pyruvate dehydrogenase complex E1 alpha subunit pyruvate dehydrogenase complex E1
alpha subunit, pyruvate
dehydrogenase complex E1 alpha
subunit		 -0.64 0.33 -0.32
14 AT1G80970 XH domain-containing protein -0.64 0.33 -0.32
15 AT1G68930 pentatricopeptide (PPR) repeat-containing protein -0.63 0.3 -0.31
16 AT5G42280 Cysteine/Histidine-rich C1 domain family protein -0.63 0.33 -0.31
17 AT5G44120 RmlC-like cupins superfamily protein CRUCIFERINA, CRUCIFERINA, CRU1 0.63 0.34 -0.31
18 AT4G29040 regulatory particle AAA-ATPase 2A regulatory particle AAA-ATPase 2A -0.62 0.31 -0.32
19 AT3G53710 ARF-GAP domain 6 ARF-GAP domain 6 -0.62 0.32 -0.32
20 AT1G63170 Zinc finger, C3HC4 type (RING finger) family protein -0.62 0.31 -0.32
21 AT1G68370 Chaperone DnaJ-domain superfamily protein ALTERED RESPONSE TO GRAVITY 1 -0.62 0.32 -0.31
22 AT5G05750 DNAJ heat shock N-terminal domain-containing protein -0.61 0.33 -0.34
23 AT4G37445 BEST Arabidopsis thaliana protein match is: Calcium-binding
EF hand family protein (TAIR:AT1G64850.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.61 0.3 -0.29
24 AT5G27830 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
response to oxidative stress; LOCATED IN: endomembrane
system; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Folate receptor, conserved region (InterPro:IPR018143); Has
1807 Blast hits to 1807 proteins in 277 species: Archae -
0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).		 -0.61 0.31 -0.29
25 AT3G08890 Protein of unknown function, DUF538 -0.61 0.33 -0.31
26 AT1G74150 Galactose oxidase/kelch repeat superfamily protein 0.61 0.3 -0.31
27 AT5G28050 Cytidine/deoxycytidylate deaminase family protein -0.61 0.31 -0.31
28 AT1G71350 eukaryotic translation initiation factor SUI1 family
protein		 0.61 0.33 -0.35
29 AT1G20050 C-8,7 sterol isomerase HYDRA1 -0.6 0.28 -0.32
30 AT5G40420 oleosin 2 OLEOSIN 2, oleosin 2 0.6 0.31 -0.32
31 AT4G01130 GDSL-like Lipase/Acylhydrolase superfamily protein -0.6 0.29 -0.31
32 AT5G17870 plastid-specific 50S ribosomal protein 6 plastid-specific 50S ribosomal
protein 6		 -0.6 0.33 -0.32
33 AT1G63290 Aldolase-type TIM barrel family protein -0.6 0.32 -0.33
34 AT2G48110 reduced epidermal fluorescence 4 MED33B, REDUCED EPIDERMAL
FLUORESCENCE 4		 0.6 0.31 -0.32
35 AT1G02950 glutathione S-transferase F4 glutathione S-transferase F4,
GLUTATHIONE S-TRANSFERASE 31,
glutathione S-transferase F4		 -0.59 0.31 -0.33
36 AT1G30010 Intron maturase, type II family protein 0.59 0.33 -0.31
37 AT1G48130 1-cysteine peroxiredoxin 1 1-cysteine peroxiredoxin 1,
1-cysteine peroxiredoxin 1		 0.59 0.32 -0.34
38 AT1G71440 tubulin folding cofactor E / Pfifferling (PFI) PFIFFERLING, TUBULIN-FOLDING
COFACTOR E		 -0.59 0.33 -0.32
39 AT3G53260 phenylalanine ammonia-lyase 2 ATPAL2, phenylalanine
ammonia-lyase 2		 -0.59 0.32 -0.32
40 AT1G43170 ribosomal protein 1 ribosomal protein 1, embryo
defective 2207, ribosomal protein
1, RPL3A		 -0.59 0.32 -0.32
41 AT4G05050 ubiquitin 11 ubiquitin 11 -0.59 0.31 -0.31
42 AT4G13050 Acyl-ACP thioesterase -0.59 0.32 -0.32
43 AT2G10760 transposable element gene 0.58 0.32 -0.35
44 AT3G55170 Ribosomal L29 family protein -0.58 0.31 -0.32
45 AT1G72220 RING/U-box superfamily protein 0.58 0.31 -0.3
46 AT4G22280 F-box/RNI-like superfamily protein 0.58 0.29 -0.3
47 AT1G71340 PLC-like phosphodiesterases superfamily protein AtGDPD4, glycerophosphodiester
phosphodiesterase 4		 -0.58 0.32 -0.33
48 AT1G69080 Adenine nucleotide alpha hydrolases-like superfamily
protein		 -0.58 0.32 -0.34
49 AT5G03345 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s:
Magnesium transporter (InterPro:IPR018937); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.58 0.32 -0.3
50 AT3G25650 SKP1-like 15 SKP1-like 15, SKP1-like 15 0.58 0.3 -0.33
51 AT5G23230 nicotinamidase 2 nicotinamidase 2 -0.58 0.32 -0.29
52 AT2G25930 hydroxyproline-rich glycoprotein family protein EARLY FLOWERING 3, PYK20 0.58 0.31 -0.32
53 AT1G52260 PDI-like 1-5 ARABIDOPSIS THALIANA PROTEIN
DISULFIDE ISOMERASE 3, PDI-like
1-5, PROTEIN DISULFIDE ISOMERASE
3, PDI-like 1-5		 -0.58 0.34 -0.3
54 AT1G61790 Oligosaccharyltransferase complex/magnesium transporter
family protein		 -0.57 0.31 -0.3
55 AT1G47260 gamma carbonic anhydrase 2 APFI, gamma carbonic anhydrase 2 -0.57 0.3 -0.33
56 AT3G20450 B-cell receptor-associated protein 31-like -0.57 0.34 -0.32
57 AT5G41650 Lactoylglutathione lyase / glyoxalase I family protein -0.57 0.31 -0.33
58 AT1G63880 Disease resistance protein (TIR-NBS-LRR class) family -0.56 0.32 -0.31
59 AT5G40950 ribosomal protein large subunit 27 ribosomal protein large subunit 27 -0.56 0.32 -0.29
60 AT4G08280 Thioredoxin superfamily protein -0.56 0.31 -0.31
61 AT1G15920 Polynucleotidyl transferase, ribonuclease H-like
superfamily protein		 0.56 0.32 -0.31
62 AT4G29960 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN: plasma
membrane; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 15 growth stages; Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 -0.56 0.31 -0.35
63 AT5G15360 unknown protein; Has 4 Blast hits to 4 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.56 0.34 -0.31
64 AT1G78260 RNA-binding (RRM/RBD/RNP motifs) family protein -0.56 0.31 -0.28
65 AT5G07710 Polynucleotidyl transferase, ribonuclease H-like
superfamily protein		 -0.56 0.28 -0.32
66 AT3G50180 Plant protein of unknown function (DUF247) -0.56 0.31 -0.31
67 AT4G00520 Acyl-CoA thioesterase family protein -0.55 0.33 -0.32
68 AT2G42830 K-box region and MADS-box transcription factor family
protein 		AGAMOUS-like 5, SHATTERPROOF 2 0.55 0.32 -0.31
69 AT3G07090 PPPDE putative thiol peptidase family protein -0.55 0.31 -0.32
70 AT1G74320 Protein kinase superfamily protein -0.55 0.32 -0.31
71 AT1G73330 drought-repressed 4 drought-repressed 4,
drought-repressed 4		 -0.55 0.31 -0.34
72 AT1G79000 histone acetyltransferase of the CBP family 1 ARABIDOPSIS HISTONE
ACETYLTRANSFERASE OF THE CBP
FAMILY 1, ARABIDOPSIS THALIANA
P300/CBP ACETYLTRANSFERASE-RELATED
PROTEIN 2, histone
acetyltransferase of the CBP
family 1, P300/CBP
ACETYLTRANSFERASE-RELATED PROTEIN
2		 -0.55 0.33 -0.32
73 AT4G03050 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 AOP3 0.55 0.32 -0.32
74 AT1G47790 F-box and associated interaction domains-containing protein -0.55 0.32 -0.34
75 AT2G28085 SAUR-like auxin-responsive protein family -0.55 0.29 -0.34
76 AT4G35987 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.55 0.31 -0.3
77 AT5G05760 syntaxin of plants 31 ATSED5, ATSYP31, T-SNARE SED 5,
syntaxin of plants 31		 -0.55 0.29 -0.33
78 AT4G31770 debranching enzyme 1 ARABIDOPSIS THALIANA DEBRANCHING
ENZYME 1, debranching enzyme 1		 -0.55 0.32 -0.33
79 AT5G52230 methyl-CPG-binding domain protein 13 methyl-CPG-binding domain protein
13		 0.55 0.33 -0.3
80 AT1G64300 Protein kinase family protein -0.55 0.31 -0.33
81 AT4G34030 3-methylcrotonyl-CoA carboxylase 3-methylcrotonyl-CoA carboxylase 0.54 0.3 -0.31
82 AT5G39950 thioredoxin 2 Arabidopsis thioredoxin h2,
thioredoxin 2, ATTRXH2,
thioredoxin 2, THIOREDOXIN H2		 -0.54 0.34 -0.32
83 AT5G56600 profilin 3 PROFILIN 3, profilin 3 -0.54 0.31 -0.32
84 AT4G01790 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein -0.54 0.33 -0.33
85 AT1G27130 glutathione S-transferase tau 13 glutathione S-transferase tau 13,
GLUTATHIONE S-TRANSFERASE 12,
glutathione S-transferase tau 13		 -0.54 0.31 -0.3
86 AT1G04290 Thioesterase superfamily protein -0.54 0.32 -0.31
87 AT1G48820 Terpenoid cyclases/Protein prenyltransferases superfamily
protein		 -0.54 0.3 -0.3
88 AT1G80550 Pentatricopeptide repeat (PPR) superfamily protein 0.54 0.32 -0.3
89 AT3G02890 RING/FYVE/PHD zinc finger superfamily protein 0.54 0.31 -0.3
90 AT4G19240 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G43280.1); Has 19 Blast hits
to 17 proteins in 2 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.53 0.31 -0.3
91 AT5G51740 Peptidase family M48 family protein -0.53 0.3 -0.31
92 AT1G54050 HSP20-like chaperones superfamily protein -0.53 0.3 -0.32
93 AT4G36380 Cytochrome P450 superfamily protein ROTUNDIFOLIA 3 0.53 0.31 -0.31
94 AT1G14800 Nucleic acid-binding, OB-fold-like protein -0.53 0.3 -0.33
95 AT5G05890 UDP-Glycosyltransferase superfamily protein -0.53 0.31 -0.32
96 AT5G08370 alpha-galactosidase 2 alpha-galactosidase 2,
alpha-galactosidase 2		 -0.53 0.32 -0.33
97 AT5G40930 translocase of outer membrane 20-4 translocase of outer membrane 20-4 -0.53 0.32 -0.32
98 AT4G00700 C2 calcium/lipid-binding plant phosphoribosyltransferase
family protein		 -0.53 0.32 -0.32
99 AT1G52280 RAB GTPase homolog G3D RAB GTPase homolog G3D, RAB GTPase
homolog G3D		 -0.53 0.33 -0.33
100 AT4G23220 cysteine-rich RLK (RECEPTOR-like protein kinase) 14 cysteine-rich RLK (RECEPTOR-like
protein kinase) 14		 -0.53 0.33 -0.34
101 AT5G36930 Disease resistance protein (TIR-NBS-LRR class) family -0.53 0.31 -0.31
102 AT4G02450 HSP20-like chaperones superfamily protein -0.52 0.32 -0.32
103 AT5G39990 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein		 -0.52 0.32 -0.33
104 AT1G62850 Class I peptide chain release factor -0.52 0.32 -0.33
105 AT1G58150 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: in 9 processes; LOCATED IN: cellular_component
unknown; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 1 Blast hits to 1 proteins in
1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.52 0.31 -0.31
106 AT1G33880 Avirulence induced gene (AIG1) family protein -0.52 0.33 -0.32
107 AT4G35720 Arabidopsis protein of unknown function (DUF241) 0.52 0.32 -0.29
108 AT3G15470 Transducin/WD40 repeat-like superfamily protein -0.52 0.32 -0.31
109 AT1G80960 F-box and Leucine Rich Repeat domains containing protein -0.52 0.34 -0.31
110 AT4G23840 Leucine-rich repeat (LRR) family protein 0.52 0.31 -0.33
111 AT1G70270 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G23965.1); Has 20 Blast hits
to 20 proteins in 7 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.52 0.3 -0.31
112 AT5G15980 Pentatricopeptide repeat (PPR) superfamily protein -0.52 0.32 -0.3
113 AT4G02850 phenazine biosynthesis PhzC/PhzF family protein -0.52 0.32 -0.32
114 AT5G35710 transposable element gene -0.52 0.33 -0.32
115 AT5G23570 XS domain-containing protein / XS zinc finger
domain-containing protein-related		 SUPPRESSOR OF GENE SILENCING 3,
SUPPRESSOR OF GENE SILENCING 3		 0.51 0.34 -0.32
116 AT2G36910 ATP binding cassette subfamily B1 ATP-binding cassette B1,
ARABIDOPSIS THALIANA P
GLYCOPROTEIN1, P-GLYCOPROTEIN 1		 0.51 0.34 -0.32
117 AT4G00720 shaggy-like protein kinase 32 SHAGGY-LIKE PROTEIN KINASE THETA,
shaggy-like protein kinase 32,
shaggy-like protein kinase 32		 0.5 0.33 -0.32
118 AT4G10560 Cysteine/Histidine-rich C1 domain family protein maternal effect embryo arrest 53 0.5 0.31 -0.3
119 AT4G27050 F-box/RNI-like superfamily protein 0.5 0.33 -0.33
120 AT2G41260 glycine-rich protein / late embryogenesis abundant protein
(M17)		 ATM17, M17 0.5 0.33 -0.32
121 AT5G32460 Transcriptional factor B3 family protein 0.5 0.27 -0.32
122 AT1G64100 pentatricopeptide (PPR) repeat-containing protein 0.49 0.32 -0.32
123 AT5G23380 Protein of unknown function (DUF789) 0.49 0.3 -0.32
124 AT1G04150 C2 calcium/lipid-binding plant phosphoribosyltransferase
family protein		 0.49 0.31 -0.3
125 AT4G24150 growth-regulating factor 8 growth-regulating factor 8,
growth-regulating factor 8		 0.49 0.3 -0.29
126 AT3G07790 DGCR14-related 0.48 0.3 -0.31
127 AT5G28030 L-cysteine desulfhydrase 1 L-cysteine desulfhydrase 1 0.48 0.32 -0.31
128 AT4G32230 unknown protein; Has 14 Blast hits to 14 proteins in 3
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 14; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.48 0.29 -0.3
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
129 C0038 5-(Methylthio)pentylglucosinolate - 5-Methylthiopentylglucosinolate glucosinolate biosynthesis from trihomomethionine -0.69 0.47 -0.45 C0038
130 C0183 MST_3033.1 - - - -0.69 0.44 -0.44
131 C0033 4-(Methylsulfinyl)butylglucosinolate - 4-Methylsulfinylbutyl glucosinolate glucosinolate biosynthesis from dihomomethionine -0.66 0.46 -0.47 C0033
132 C0267 Zeatin cis-Zeatin cis-Zeatin cytokinins-O-glucoside biosynthesis,
cytokinins degradation,
cytokinins 7-N-glucoside biosynthesis,
cytokinins 9-N-glucoside biosynthesis,
cis-zeatin biosynthesis 		0.62 0.46 -0.42 C0267
133 C0255 Trehalose α,α-D-Trehalose Trehalose trehalose degradation II (trehalase),
trehalose biosynthesis I 		-0.55 0.32 -0.29 C0255
134 C0244 Sucrose D-Sucrose Sucrose stachyose biosynthesis,
fructan degradation,
stachyose degradation,
galactose degradation III,
superpathway of sucrose and starch metabolism II (photosynthetic tissue),
sucrose degradation III,
UDP-glucose biosynthesis (from sucrose),
ajugose biosynthesis II (galactinol-independent),
sucrose biosynthesis I 		-0.53 0.33 -0.33 C0244