AT1G62830 : ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE.....
Query Information
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AGICode AT1G62830
Description LSD1-like 1
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT1G62830 LSD1-like 1 ARABIDOPSIS LYSINE-SPECIFIC
HISTONE DEMETHYLASE, ATSWP1,
LSD1-like 1, LYSINE-SPECIFIC
HISTONE DEMETHYLASE, SWP1		 1 0.32 -0.3
2 AT1G63880 Disease resistance protein (TIR-NBS-LRR class) family 0.81 0.3 -0.31
3 AT5G17870 plastid-specific 50S ribosomal protein 6 plastid-specific 50S ribosomal
protein 6		 0.81 0.31 -0.32
4 AT4G13050 Acyl-ACP thioesterase 0.81 0.31 -0.33
5 AT1G43170 ribosomal protein 1 ribosomal protein 1, embryo
defective 2207, ribosomal protein
1, RPL3A		 0.8 0.31 -0.32
6 AT5G05890 UDP-Glycosyltransferase superfamily protein 0.78 0.31 -0.33
7 AT1G65370 TRAF-like family protein 0.78 0.33 -0.3
8 AT1G64270 transposable element gene 0.76 0.32 -0.32
9 AT1G59900 pyruvate dehydrogenase complex E1 alpha subunit pyruvate dehydrogenase complex E1
alpha subunit, pyruvate
dehydrogenase complex E1 alpha
subunit		 0.73 0.33 -0.32
10 AT5G17890 DA1-related protein 4 CHILLING SENSITIVE 3, DA1-related
protein 4		 0.72 0.33 -0.34
11 AT3G55170 Ribosomal L29 family protein 0.72 0.33 -0.32
12 AT5G24760 GroES-like zinc-binding dehydrogenase family protein -0.72 0.29 -0.32
13 AT1G61730 DNA-binding storekeeper protein-related transcriptional
regulator		 0.72 0.34 -0.32
14 AT5G27110 Tetratricopeptide repeat (TPR)-like superfamily protein 0.72 0.32 -0.32
15 AT3G53710 ARF-GAP domain 6 ARF-GAP domain 6 0.71 0.33 -0.31
16 AT1G51430 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G28370.1); Has 13 Blast hits
to 13 proteins in 4 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.71 0.33 -0.31
17 AT1G64190 6-phosphogluconate dehydrogenase family protein 0.71 0.33 -0.3
18 AT5G04320 Shugoshin C terminus 0.71 0.31 -0.34
19 AT5G35730 EXS (ERD1/XPR1/SYG1) family protein 0.7 0.34 -0.31
20 AT5G27990 Pre-rRNA-processing protein TSR2, conserved region 0.7 0.32 -0.32
21 AT4G27050 F-box/RNI-like superfamily protein -0.69 0.31 -0.34
22 AT5G17880 disease resistance protein (TIR-NBS-LRR class) constitutive shade-avoidance1 0.69 0.31 -0.32
23 AT5G28500 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT3G04550.1); Has 109 Blast hits to 109 proteins in
49 species: Archae - 0; Bacteria - 67; Metazoa - 0; Fungi -
0; Plants - 41; Viruses - 0; Other Eukaryotes - 1 (source:
NCBI BLink).		 0.69 0.33 -0.36
24 AT5G20580 BEST Arabidopsis thaliana protein match is: FRIGIDA
interacting protein 1 (TAIR:AT2G06005.1); Has 167 Blast
hits to 167 proteins in 73 species: Archae - 0; Bacteria -
25; Metazoa - 58; Fungi - 25; Plants - 43; Viruses - 0;
Other Eukaryotes - 16 (source: NCBI BLink).		 0.68 0.32 -0.32
25 AT1G74320 Protein kinase superfamily protein 0.68 0.32 -0.31
26 AT5G03200 RING/U-box superfamily protein 0.68 0.32 -0.31
27 AT5G37290 ARM repeat superfamily protein 0.68 0.3 -0.33
28 AT5G40830 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.67 0.31 -0.32
29 AT4G11100 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G03060.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.67 0.29 -0.31
30 AT4G01790 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.67 0.33 -0.32
31 AT1G65290 mitochondrial acyl carrier protein 2 mitochondrial acyl carrier protein
2		 0.67 0.31 -0.33
32 AT4G09680 conserved telomere maintenance component 1 ATCTC1, conserved telomere
maintenance component 1		 0.67 0.29 -0.33
33 AT1G68370 Chaperone DnaJ-domain superfamily protein ALTERED RESPONSE TO GRAVITY 1 0.67 0.31 -0.33
34 AT1G62330 O-fucosyltransferase family protein 0.67 0.33 -0.34
35 AT5G05750 DNAJ heat shock N-terminal domain-containing protein 0.66 0.31 -0.32
36 AT5G39990 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein		 0.66 0.33 -0.32
37 AT1G58150 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: in 9 processes; LOCATED IN: cellular_component
unknown; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 1 Blast hits to 1 proteins in
1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.66 0.32 -0.31
38 AT1G62150 Mitochondrial transcription termination factor family
protein		 0.66 0.29 -0.33
39 AT1G62360 KNOX/ELK homeobox transcription factor BUMBERSHOOT, BUMBERSHOOT 1,
SHOOTLESS, SHOOT MERISTEMLESS,
WALDMEISTER, WALDMEISTER 1		 0.66 0.32 -0.33
40 AT4G11830 phospholipase D gamma 2 phospholipase D gamma 2 0.66 0.31 -0.32
41 AT5G15980 Pentatricopeptide repeat (PPR) superfamily protein 0.66 0.3 -0.31
42 AT1G65280 DNAJ heat shock N-terminal domain-containing protein 0.66 0.31 -0.31
43 AT1G77080 K-box region and MADS-box transcription factor family
protein 		AGAMOUS-like 27, FLOWERING LOCUS
M, MADS AFFECTING FLOWERING 1		 0.66 0.31 -0.3
44 AT4G19240 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G43280.1); Has 19 Blast hits
to 17 proteins in 2 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.65 0.31 -0.31
45 AT4G01130 GDSL-like Lipase/Acylhydrolase superfamily protein 0.65 0.3 -0.32
46 AT1G78970 lupeol synthase 1 ARABIDOPSIS THALIANA LUPEOL
SYNTHASE 1, lupeol synthase 1		 0.65 0.31 -0.31
47 AT5G42280 Cysteine/Histidine-rich C1 domain family protein 0.64 0.32 -0.32
48 AT1G65870 Disease resistance-responsive (dirigent-like protein)
family protein		 0.64 0.32 -0.31
49 AT5G27270 Tetratricopeptide repeat (TPR)-like superfamily protein EMBRYO DEFECTIVE 976 0.64 0.31 -0.31
50 AT5G20450 CONTAINS InterPro DOMAIN/s: Dilute (InterPro:IPR002710);
BEST Arabidopsis thaliana protein match is: Myosin family
protein with Dil domain (TAIR:AT5G20490.2); Has 1723 Blast
hits to 1458 proteins in 355 species: Archae - 28; Bacteria
- 353; Metazoa - 453; Fungi - 121; Plants - 353; Viruses -
3; Other Eukaryotes - 412 (source: NCBI BLink).		 0.63 0.34 -0.32
51 AT5G35450 Disease resistance protein (CC-NBS-LRR class) family 0.63 0.33 -0.29
52 AT1G51500 ABC-2 type transporter family protein ATP-binding cassette G12,
AtABCG12, ARABIDOPSIS THALIANA
WHITE-BROWN COMPLEX 12, ECERIFERUM
5, D3, WHITE-BROWN COMPLEX 12		 0.63 0.32 -0.32
53 AT1G51360 dimeric A/B barrel domainS-protein 1 DIMERIC A/B BARREL DOMAINS-PROTEIN
1, dimeric A/B barrel
domainS-protein 1		 0.63 0.3 -0.32
54 AT4G08960 phosphotyrosyl phosphatase activator (PTPA) family protein -0.62 0.34 -0.32
55 AT1G52590 Putative thiol-disulphide oxidoreductase DCC -0.62 0.31 -0.3
56 AT1G64490 DEK, chromatin associated protein 0.62 0.32 -0.32
57 AT4G25100 Fe superoxide dismutase 1 ARABIDOPSIS FE SUPEROXIDE
DISMUTASE 1, Fe superoxide
dismutase 1		 0.62 0.32 -0.3
58 AT1G66540 Cytochrome P450 superfamily protein 0.62 0.32 -0.31
59 AT4G12840 Protein of unknown function (DUF707) 0.62 0.32 -0.3
60 AT1G78310 VQ motif-containing protein -0.61 0.29 -0.31
61 AT1G49950 telomere repeat binding factor 1 TELOMERE REPEAT BINDING FACTOR 1,
telomere repeat binding factor 1		 0.61 0.33 -0.32
62 AT5G22510 alkaline/neutral invertase alkaline/neutral invertase E,
Arabidopsis alkaline/neutral
invertase E, alkaline/neutral
invertase E		 0.61 0.32 -0.3
63 AT5G49840 ATP-dependent Clp protease -0.61 0.32 -0.31
64 AT1G63540 hydroxyproline-rich glycoprotein family protein -0.61 0.3 -0.33
65 AT4G05520 EPS15 homology domain 2 EPS15 homology domain 2, EPS15
homology domain 2		 0.6 0.32 -0.32
66 AT1G62850 Class I peptide chain release factor 0.6 0.3 -0.32
67 AT1G66620 Protein with RING/U-box and TRAF-like domains 0.6 0.32 -0.32
68 AT5G23230 nicotinamidase 2 nicotinamidase 2 0.6 0.28 -0.3
69 AT5G37630 ARM repeat superfamily protein EMBRYO DEFECTIVE 2656 0.6 0.32 -0.32
70 AT4G02450 HSP20-like chaperones superfamily protein 0.59 0.31 -0.31
71 AT4G05040 ankyrin repeat family protein 0.59 0.33 -0.31
72 AT5G49630 amino acid permease 6 amino acid permease 6 0.59 0.33 -0.33
73 AT5G08565 Transcription initiation Spt4-like protein 0.59 0.31 -0.31
74 AT5G10140 K-box region and MADS-box transcription factor family
protein 		AGAMOUS-like 25, FLC, FLOWERING
LOCUS C, FLOWERING LOCUS F		 0.58 0.33 -0.33
75 AT4G22280 F-box/RNI-like superfamily protein -0.58 0.3 -0.3
76 AT4G11080 HMG (high mobility group) box protein 3xHigh Mobility Group-box1 0.58 0.3 -0.32
77 AT5G36930 Disease resistance protein (TIR-NBS-LRR class) family 0.58 0.3 -0.3
78 AT1G70060 SIN3-like 4 SIN3-like 4 0.58 0.31 -0.3
79 AT5G16640 Pentatricopeptide repeat (PPR) superfamily protein 0.57 0.3 -0.32
80 AT5G20620 ubiquitin 4 ubiquitin 4 -0.57 0.32 -0.31
81 AT1G79000 histone acetyltransferase of the CBP family 1 ARABIDOPSIS HISTONE
ACETYLTRANSFERASE OF THE CBP
FAMILY 1, ARABIDOPSIS THALIANA
P300/CBP ACETYLTRANSFERASE-RELATED
PROTEIN 2, histone
acetyltransferase of the CBP
family 1, P300/CBP
ACETYLTRANSFERASE-RELATED PROTEIN
2		 0.57 0.31 -0.31
82 AT1G55910 zinc transporter 11 precursor zinc transporter 11 precursor 0.57 0.32 -0.32
83 AT5G35840 phytochrome C phytochrome C 0.57 0.33 -0.33
84 AT5G07770 Actin-binding FH2 protein 0.56 0.31 -0.34
85 AT2G22520 unknown protein; Has 186 Blast hits to 37 proteins in 16
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4;
Plants - 17; Viruses - 0; Other Eukaryotes - 165 (source:
NCBI BLink).		 0.56 0.34 -0.32
86 AT5G41140 Myosin heavy chain-related protein 0.56 0.33 -0.33
87 AT1G52600 Peptidase S24/S26A/S26B/S26C family protein -0.56 0.3 -0.3
88 AT1G67550 urease urease 0.56 0.33 -0.33
89 AT1G51440 alpha/beta-Hydrolases superfamily protein 0.56 0.3 -0.29
90 AT3G15800 Glycosyl hydrolase superfamily protein 0.56 0.33 -0.32
91 AT1G60930 RECQ helicase L4B RECQ helicase L4B, RECQ helicase
L4B, RECQ HELICASE L4B		 0.56 0.34 -0.33
92 AT4G08320 Tetratricopeptide repeat (TPR)-like superfamily protein tetratricopeptide repeat 8 -0.55 0.3 -0.33
93 AT1G67800 Copine (Calcium-dependent phospholipid-binding protein)
family		 -0.55 0.3 -0.33
94 AT4G36480 long-chain base1 long-chain base1, EMBRYO DEFECTIVE
2779, FUMONISIN B1 RESISTANT 11,
long-chain base1		 -0.55 0.32 -0.3
95 AT1G79440 aldehyde dehydrogenase 5F1 aldehyde dehydrogenase 5F1,
ENLARGED FIL EXPRESSION DOMAIN 1,
SUCCINIC SEMIALDEHYDE
DEHYDROGENASE, SUCCINIC
SEMIALDEHYDE DEHYDROGENASE 1		 -0.54 0.32 -0.34
96 AT5G14270 bromodomain and extraterminal domain protein 9 bromodomain and extraterminal
domain protein 9, bromodomain and
extraterminal domain protein 9		 -0.54 0.32 -0.31
97 AT1G54040 epithiospecifier protein epithiospecifier protein,
EPITHIOSPECIFYING SENESCENCE
REGULATOR, TASTY		 -0.53 0.3 -0.33
98 AT4G35230 BR-signaling kinase 1 BR-signaling kinase 1 -0.52 0.32 -0.32
99 AT1G53165 Protein kinase superfamily protein ATMAP4K ALPHA1 -0.48 0.31 -0.34
100 AT5G37130 Protein prenylyltransferase superfamily protein -0.48 0.29 -0.31
101 AT5G19950 Domain of unknown function (DUF1767) -0.48 0.33 -0.31
102 AT3G30180 brassinosteroid-6-oxidase 2 brassinosteroid-6-oxidase 2,
CYP85A2		 -0.47 0.32 -0.31
103 AT4G26220 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.47 0.35 -0.34
104 AT1G79050 recA DNA recombination family protein -0.46 0.32 -0.3
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
105 C0038 5-(Methylthio)pentylglucosinolate - 5-Methylthiopentylglucosinolate glucosinolate biosynthesis from trihomomethionine 0.92 0.47 -0.45 C0038
106 C0033 4-(Methylsulfinyl)butylglucosinolate - 4-Methylsulfinylbutyl glucosinolate glucosinolate biosynthesis from dihomomethionine 0.89 0.44 -0.47 C0033
107 C0034 4-Methylthio-n-butylglucosinolate - 4-Methylthiobutyl glucosinolate glucosinolate biosynthesis from dihomomethionine 0.85 0.31 -0.31 C0034
108 C0183 MST_3033.1 - - - 0.81 0.43 -0.47
109 C0037 5-Methylsulfinyl-n-pentylglucosinolate - 5-Methylsulfinylpentyl glucosinolate glucosinolate biosynthesis from trihomomethionine 0.75 0.32 -0.31 C0037
110 C0244 Sucrose D-Sucrose Sucrose stachyose biosynthesis,
fructan degradation,
stachyose degradation,
galactose degradation III,
superpathway of sucrose and starch metabolism II (photosynthetic tissue),
sucrose degradation III,
UDP-glucose biosynthesis (from sucrose),
ajugose biosynthesis II (galactinol-independent),
sucrose biosynthesis I 		0.71 0.31 -0.31 C0244
111 C0026 2-Hydroxyisobutyric acid - - β oxidation -0.69 0.46 -0.43
112 C0040 6-Methylsulfinyl-n-hexylglucosinolate - 6-Methylsulfinylhexyl glucosinolate glucosinolate biosynthesis from tetrahomomethionine 0.57 0.34 -0.34 C0040
113 C0060 Asparagine D,L-Asparagine L-Asparagine asparagine degradation I,
asparagine biosynthesis III (tRNA-dependent),
asparagine biosynthesis I,
tRNA charging,
cyanide detoxification II 		-0.49 0.29 -0.31 C0060