AT2G20460 : -
Query Information
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AGICode AT2G20460
Description transposable element gene
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT2G20460 transposable element gene 1 0.29 -0.32
2 AT1G02360 Chitinase family protein -0.71 0.33 -0.31
3 AT5G43310 COP1-interacting protein-related 0.71 0.31 -0.31
4 AT5G58030 Transport protein particle (TRAPP) component -0.7 0.31 -0.3
5 AT2G18590 Major facilitator superfamily protein 0.68 0.31 -0.33
6 AT1G22690 Gibberellin-regulated family protein -0.67 0.31 -0.33
7 AT5G14250 Proteasome component (PCI) domain protein CONSTITUTIVE PHOTOMORPHOGENIC 13,
COP9 SIGNALOSOME SUBUNIT 3, FUSCA
11		 -0.67 0.33 -0.33
8 AT5G24350 CONTAINS InterPro DOMAIN/s: Secretory pathway Sec39
(InterPro:IPR013244); Has 1807 Blast hits to 1807 proteins
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes -
339 (source: NCBI BLink).		 0.66 0.31 -0.29
9 AT3G17980 Calcium-dependent lipid-binding (CaLB domain) family
protein		 Arabidopsis thaliana C2 domain, C2
domain		 0.66 0.3 -0.33
10 AT1G22450 cytochrome C oxidase 6B CYTOCHROME C OXIDASE 6B2,
cytochrome C oxidase 6B		 -0.66 0.32 -0.3
11 AT4G16160 Mitochondrial import inner membrane translocase subunit
Tim17/Tim22/Tim23 family protein		 ATOEP16-2, ATOEP16-S 0.66 0.31 -0.33
12 AT2G21490 dehydrin LEA dehydrin LEA 0.66 0.32 -0.32
13 AT4G04970 glucan synthase-like 1 GLUCAN SYNTHASE LIKE 1, GLUCAN
SYNTHASE LIKE-1, GSL01, glucan
synthase-like 1		 0.66 0.33 -0.33
14 AT5G55240 ARABIDOPSIS THALIANA PEROXYGENASE 2 ARABIDOPSIS THALIANA PEROXYGENASE
2		 0.66 0.3 -0.32
15 AT1G42250 transposable element gene 0.66 0.33 -0.32
16 AT1G60860 ARF-GAP domain 2 ARF-GAP domain 2 0.65 0.31 -0.3
17 AT2G21820 unknown protein; Has 45 Blast hits to 45 proteins in 13
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.65 0.32 -0.32
18 AT2G11140 transposable element gene -0.65 0.29 -0.33
19 AT5G16520 unknown protein; Has 25 Blast hits to 25 proteins in 9
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.65 0.33 -0.32
20 AT1G15330 Cystathionine beta-synthase (CBS) protein 0.65 0.32 -0.31
21 AT3G25070 RPM1 interacting protein 4 RPM1 interacting protein 4 -0.64 0.32 -0.31
22 AT1G02700 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT4G02140.1); Has 49 Blast hits to 49
proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa -
10; Fungi - 6; Plants - 29; Viruses - 0; Other Eukaryotes -
4 (source: NCBI BLink).		 0.62 0.3 -0.34
23 AT1G73750 Uncharacterised conserved protein UCP031088, alpha/beta
hydrolase		 0.62 0.31 -0.29
24 AT5G11050 myb domain protein 64 myb domain protein 64, myb domain
protein 64		 0.62 0.31 -0.29
25 AT1G55350 calpain-type cysteine protease family ATDEK1, DEFECTIVE KERNEL 1, embryo
defective 1275, EMBRYO DEFECTIVE
80		 0.62 0.32 -0.31
26 AT4G19500 nucleoside-triphosphatases;transmembrane
receptors;nucleotide binding;ATP binding		 0.62 0.33 -0.32
27 AT4G03205 Coproporphyrinogen III oxidase hemf2 0.62 0.31 -0.3
28 AT2G18180 Sec14p-like phosphatidylinositol transfer family protein 0.62 0.31 -0.32
29 AT3G28910 myb domain protein 30 ATMYB30, myb domain protein 30 -0.62 0.31 -0.31
30 AT1G23820 spermidine synthase 1 spermidine synthase 1 -0.62 0.34 -0.32
31 AT2G43800 Actin-binding FH2 (formin homology 2) family protein 0.62 0.33 -0.34
32 AT2G46690 SAUR-like auxin-responsive protein family 0.61 0.32 -0.32
33 AT4G27890 HSP20-like chaperones superfamily protein -0.61 0.31 -0.29
34 AT4G12020 protein kinase family protein ATWRKY19, MITOGEN-ACTIVATED
PROTEIN KINASE KINASE KINASE 11,
MAPK/ERK KINASE KINASE 4, WRKY19		 0.61 0.3 -0.31
35 AT1G50720 Stigma-specific Stig1 family protein -0.61 0.3 -0.32
36 AT2G13270 transposable element gene 0.61 0.33 -0.32
37 AT2G34740 Protein phosphatase 2C family protein 0.61 0.31 -0.32
38 AT1G43970 unknown protein; Has 10 Blast hits to 8 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 10; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.61 0.3 -0.31
39 AT1G52200 PLAC8 family protein -0.61 0.29 -0.32
40 AT1G03060 Beige/BEACH domain ;WD domain, G-beta repeat protein SPIRRIG 0.61 0.31 -0.31
41 AT5G51210 oleosin3 oleosin3 0.61 0.32 -0.3
42 AT3G27670 ARM repeat superfamily protein RESURRECTION1 0.6 0.32 -0.32
43 AT4G28440 Nucleic acid-binding, OB-fold-like protein -0.6 0.31 -0.31
44 AT3G45420 Concanavalin A-like lectin protein kinase family protein 0.6 0.33 -0.33
45 AT4G24240 WRKY DNA-binding protein 7 ATWRKY7, WRKY DNA-binding protein
7		 -0.6 0.31 -0.33
46 AT1G69430 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G26650.1); Has 216 Blast hits
to 215 proteins in 17 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 216; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.6 0.31 -0.3
47 AT2G47310 flowering time control protein-related / FCA gamma-related 0.6 0.31 -0.32
48 AT2G23240 Plant EC metallothionein-like protein, family 15 Arabidopsis thaliana
metallothionein 4b		 0.6 0.32 -0.33
49 AT2G41420 proline-rich family protein WINDHOSE 2 -0.59 0.33 -0.33
50 AT5G22720 F-box/RNI-like superfamily protein 0.59 0.3 -0.3
51 AT1G04800 glycine-rich protein -0.59 0.31 -0.29
52 AT5G23150 Tudor/PWWP/MBT domain-containing protein ENHANCER OF AG-4 2 0.59 0.31 -0.32
53 AT1G55150 DEA(D/H)-box RNA helicase family protein -0.59 0.32 -0.31
54 AT4G29740 cytokinin oxidase 4 ATCKX4, cytokinin oxidase 4 -0.58 0.32 -0.32
55 AT3G08910 DNAJ heat shock family protein -0.58 0.31 -0.3
56 AT2G45120 C2H2-like zinc finger protein -0.58 0.33 -0.31
57 AT1G76860 Small nuclear ribonucleoprotein family protein -0.58 0.31 -0.3
58 AT5G46860 Syntaxin/t-SNARE family protein ARABIDOPSIS THALIANA SYNTAXIN OF
PLANTS 22, ARABIDOPSIS THALIANA
VACUOLAR MORPHOLOGY 3, SHOOT
GRAVITROPISM 3, SYNTAXIN OF PLANTS
22, VACUOLAR MORPHOLOGY 3		 -0.58 0.33 -0.3
59 AT1G04070 translocase of outer membrane 22-I ATTOM22-I, translocase of outer
membrane 22-I		 -0.58 0.33 -0.32
60 AT2G12720 transposable element gene 0.57 0.31 -0.31
61 AT5G66100 winged-helix DNA-binding transcription factor family
protein		 -0.57 0.31 -0.33
62 AT3G09520 exocyst subunit exo70 family protein H4 exocyst subunit exo70 family
protein H4, exocyst subunit exo70
family protein H4		 -0.57 0.32 -0.32
63 AT1G28160 Integrase-type DNA-binding superfamily protein -0.57 0.33 -0.31
64 AT4G14410 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 basic Helix-Loop-Helix 104 -0.57 0.31 -0.31
65 AT2G07505 zinc ion binding -0.57 0.31 -0.32
66 AT5G62740 SPFH/Band 7/PHB domain-containing membrane-associated
protein family		 ATHIR1, AtHIR4,
HYPERSENSITIVE-INDUCED RESPONSE
PROTEIN 1, hypersensitive induced
reaction 4		 -0.56 0.31 -0.3
67 AT4G11300 Protein of unknown function (DUF793) -0.56 0.29 -0.3
68 AT2G39840 type one serine/threonine protein phosphatase 4 type one serine/threonine protein
phosphatase 4		 -0.56 0.32 -0.31
69 AT2G37430 C2H2 and C2HC zinc fingers superfamily protein -0.56 0.27 -0.32
70 AT4G05370 BCS1 AAA-type ATPase -0.55 0.31 -0.3
71 AT2G23680 Cold acclimation protein WCOR413 family -0.55 0.29 -0.33
72 AT5G39650 Protein of unknown function (DUF679) DUO1-activated unknown 2 0.55 0.32 -0.33
73 AT5G43340 phosphate transporter 1;6 phosphate transporter 1;6,
PHOSPHATE TRANSPORTER 6		 0.55 0.31 -0.31
74 AT1G71250 GDSL-like Lipase/Acylhydrolase superfamily protein -0.55 0.32 -0.3
75 AT1G50650 Stigma-specific Stig1 family protein -0.55 0.31 -0.33
76 AT5G06520 SWAP (Suppressor-of-White-APricot)/surp domain-containing
protein		 -0.55 0.29 -0.32
77 AT2G14570 transposable element gene 0.55 0.35 -0.3
78 AT3G32060 transposable element gene -0.55 0.32 -0.31
79 AT2G28030 Eukaryotic aspartyl protease family protein -0.55 0.31 -0.3
80 AT1G09010 glycoside hydrolase family 2 protein 0.55 0.33 -0.32
81 AT4G33890 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G14850.1); Has 133 Blast hits
to 131 proteins in 15 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 2; Plants - 129; Viruses - 0; Other
Eukaryotes - 2 (source: NCBI BLink).		 -0.54 0.32 -0.31
82 AT5G20710 beta-galactosidase 7 beta-galactosidase 7 0.54 0.33 -0.3
83 AT1G55250 histone mono-ubiquitination 2 histone mono-ubiquitination 2 0.54 0.31 -0.31
84 AT1G03550 Secretory carrier membrane protein (SCAMP) family protein 0.54 0.33 -0.28
85 AT3G18810 Protein kinase superfamily protein proline-rich extensin-like
receptor kinase 6, proline-rich
extensin-like receptor kinase 6		 0.54 0.28 -0.32
86 AT2G25780 Protein of unknown function (DUF1677) -0.54 0.32 -0.31
87 AT2G42590 general regulatory factor 9 GF14 MU, general regulatory factor
9		 -0.54 0.32 -0.31
88 AT3G02890 RING/FYVE/PHD zinc finger superfamily protein 0.54 0.3 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
89 C0258 Tryptophan amide (NH3+) D,L-Tryptophan amide (NH3+) - - 0.74 0.44 -0.45
90 C0053 ADP - ADP phosphatidylcholine biosynthesis I,
mannitol degradation II,
lipid IVA biosynthesis,
stachyose degradation,
Rubisco shunt,
copper transport II,
glycerol degradation IV,
chorismate biosynthesis,
folate polyglutamylation II,
galactose degradation III,
D-myo-inositol (1,4,5)-trisphosphate biosynthesis,
UDP-L-arabinose biosynthesis II (from L-arabinose),
cadmium transport I,
folate polyglutamylation,
coenzyme A biosynthesis,
sulfate activation for sulfonation,
1,4-dihydroxy-2-naphthoate biosynthesis II (plants),
pyrimidine deoxyribonucleotides de novo biosynthesis I,
galactose degradation II,
inosine-5'-phosphate biosynthesis II,
ribose degradation,
acetyl-CoA biosynthesis (from citrate),
inositol pyrophosphates biosynthesis,
fatty acid biosynthesis initiation I,
xylose degradation I,
adenine and adenosine salvage VI,
TCA cycle variation III (eukaryotic),
tetrahydrofolate biosynthesis II,
phosphatidylethanolamine biosynthesis II,
pyridoxal 5'-phosphate salvage pathway,
citrulline biosynthesis,
trans-zeatin biosynthesis,
glutamine biosynthesis I,
arginine biosynthesis II (acetyl cycle),
L-Ndelta-acetylornithine biosynthesis,
mevalonate pathway I,
methionine biosynthesis II,
trehalose degradation II (trehalase),
citrulline degradation,
methionine salvage pathway,
TCA cycle variation V (plant),
chlorophyllide a biosynthesis I,
starch degradation I,
methylerythritol phosphate pathway,
pyridine nucleotide cycling (plants),
ceramide degradation,
biotin-carboxyl carrier protein assembly,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
UDP-D-galacturonate biosynthesis II (from D-galacturonate),
asparagine biosynthesis III (tRNA-dependent),
superpathway of glyoxylate cycle and fatty acid degradation,
NAD/NADH phosphorylation and dephosphorylation,
1D-myo-inositol hexakisphosphate biosynthesis V (from Ins(1,3,4)P3),
galactose degradation I (Leloir pathway),
uridine-5'-phosphate biosynthesis,
lipid-dependent phytate biosynthesis II (via Ins(1,3,4)P3),
sucrose degradation III,
lysine biosynthesis VI,
sphingolipid biosynthesis (plants),
choline biosynthesis I,
GDP-glucose biosynthesis,
photorespiration,
gamma-glutamyl cycle (plant pathway),
5-aminoimidazole ribonucleotide biosynthesis I,
gamma-glutamyl cycle,
thiamine biosynthesis II,
proline biosynthesis III,
glutathione biosynthesis,
folate transformations II,
ornithine biosynthesis,
diphthamide biosynthesis,
S-methyl-5'-thioadenosine degradation I,
starch biosynthesis,
arginine biosynthesis I,
homoserine biosynthesis,
flavin biosynthesis I (bacteria and plants),
sucrose biosynthesis I,
leucine degradation I,
glycolysis I,
pyrimidine ribonucleotides interconversion,
1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza),
glycolysis IV (plant cytosol),
Calvin-Benson-Bassham cycle,
UDP-D-glucuronate biosynthesis (from myo-inositol),
guanine and guanosine salvage III,
glutamine biosynthesis III,
L-glutamine biosynthesis II (tRNA-dependent),
GDP-L-fucose biosynthesis II (from L-fucose),
nitrate reduction II (assimilatory),
ammonia assimilation cycle II,
gluconeogenesis I,
threonine biosynthesis from homoserine,
mannose degradation,
urea cycle,
lipid-dependent phytate biosynthesis I (via Ins(1,4,5)P3),
biotin biosynthesis II 		0.69 0.42 -0.45 C0053
91 C0099 Glucose-1-phosphate α,β-D-Glucose-1-phosphate α-D-Glucose-1-phosphate; β-D-Glucose-1-phosphate galactose degradation I (Leloir pathway) 0.68 0.44 -0.42 C0099