AT2G22310 : ubiquitin-specific protease 4
Query Information
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AGICode AT2G22310
Description ubiquitin-specific protease 4
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT2G22310 ubiquitin-specific protease 4 ubiquitin-specific protease 4,
ubiquitin-specific protease 4		 1 0.34 -0.32
2 AT2G43770 Transducin/WD40 repeat-like superfamily protein -0.73 0.33 -0.32
3 AT5G07110 prenylated RAB acceptor 1.B6 prenylated RAB acceptor 1.B6 -0.7 0.3 -0.31
4 AT1G71430 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; Has 64
Blast hits to 64 proteins in 28 species: Archae - 0;
Bacteria - 0; Metazoa - 14; Fungi - 6; Plants - 42; Viruses
- 0; Other Eukaryotes - 2 (source: NCBI BLink).		 -0.7 0.3 -0.31
5 AT5G10840 Endomembrane protein 70 protein family -0.7 0.3 -0.31
6 AT1G31660 CONTAINS InterPro DOMAIN/s: Bystin (InterPro:IPR007955);
Has 475 Blast hits to 467 proteins in 210 species: Archae -
0; Bacteria - 9; Metazoa - 155; Fungi - 139; Plants - 55;
Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink).		 -0.7 0.31 -0.31
7 AT3G46830 RAB GTPase homolog A2C ARABIDOPSIS RAB GTPASE HOMOLOG
A2C, ATRAB11A, RAB GTPase homolog
A2C, RAB GTPASE HOMOLOG A2C, RAB
GTPase homolog A2C		 -0.69 0.31 -0.33
8 AT1G15740 Leucine-rich repeat family protein 0.68 0.31 -0.31
9 AT5G24570 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.68 0.3 -0.31
10 AT2G19540 Transducin family protein / WD-40 repeat family protein -0.68 0.31 -0.32
11 AT2G27900 CONTAINS InterPro DOMAIN/s: Protein of unknown function
DUF2451, C-terminal (InterPro:IPR019514), Vacuolar protein
sorting-associated protein 54 (InterPro:IPR019515); Has 316
Blast hits to 252 proteins in 92 species: Archae - 0;
Bacteria - 2; Metazoa - 200; Fungi - 2; Plants - 68;
Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).		 0.68 0.35 -0.33
12 AT3G02300 Regulator of chromosome condensation (RCC1) family protein 0.67 0.31 -0.31
13 AT3G55620 Translation initiation factor IF6 eukaryotic initiation facor 6A,
embryo defective 1624		 -0.67 0.3 -0.3
14 AT2G44860 Ribosomal protein L24e family protein -0.67 0.34 -0.31
15 AT3G52070 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 23 Blast hits to 23 proteins
in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 0.67 0.35 -0.33
16 AT5G44450 methyltransferases -0.67 0.33 -0.32
17 AT5G23300 pyrimidine d pyrimidine d -0.67 0.32 -0.32
18 AT1G54770 Fcf2 pre-rRNA processing protein -0.66 0.35 -0.31
19 AT5G24840 tRNA (guanine-N-7) methyltransferase -0.66 0.31 -0.33
20 AT4G15770 RNA binding -0.66 0.32 -0.31
21 AT5G57870 MIF4G domain-containing protein / MA3 domain-containing
protein		 eukaryotic translation Initiation
Factor isoform 4G1		 -0.66 0.31 -0.32
22 AT5G13270 Pentatricopeptide repeat (PPR) superfamily protein REQUIRED FOR ACCD RNA EDITING 1 -0.66 0.33 -0.32
23 AT1G48570 zinc finger (Ran-binding) family protein -0.65 0.31 -0.32
24 AT1G53500 NAD-dependent epimerase/dehydratase family protein ARABIDOPSIS THALIANA
MUCILAGE-MODIFIED 4, ARABIDOPSIS
THALIANA RHAMNOSE BIOSYNTHESIS 2,
MUCILAGE-MODIFIED 4, RHAMNOSE
BIOSYNTHESIS 2		 -0.65 0.31 -0.32
25 AT3G52040 unknown protein; Has 37 Blast hits to 37 proteins in 15
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 37; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.65 0.3 -0.33
26 AT2G32220 Ribosomal L27e protein family -0.65 0.32 -0.32
27 AT1G19240 unknown protein; Has 24 Blast hits to 24 proteins in 11
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.65 0.29 -0.32
28 AT5G03740 histone deacetylase 2C histone deacetylase 2C, HISTONE
DEACETYLASE 3		 -0.64 0.31 -0.33
29 AT3G49990 unknown protein; Has 1524 Blast hits to 1298 proteins in
225 species: Archae - 9; Bacteria - 84; Metazoa - 474;
Fungi - 184; Plants - 98; Viruses - 17; Other Eukaryotes -
658 (source: NCBI BLink).		 -0.64 0.29 -0.32
30 AT4G36020 cold shock domain protein 1 cold shock domain protein 1 -0.64 0.31 -0.31
31 AT3G13940 DNA binding;DNA-directed RNA polymerases -0.64 0.32 -0.33
32 AT1G26850 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.64 0.3 -0.33
33 AT4G38710 glycine-rich protein -0.64 0.31 -0.31
34 AT3G17830 Molecular chaperone Hsp40/DnaJ family protein -0.64 0.31 -0.29
35 AT5G40770 prohibitin 3 prohibitin 3, prohibitin 3 -0.64 0.32 -0.33
36 AT1G75200 flavodoxin family protein / radical SAM domain-containing
protein		 -0.64 0.33 -0.3
37 AT2G46170 Reticulon family protein -0.64 0.32 -0.29
38 AT1G34140 poly(A) binding protein 1 poly(A) binding protein 1 0.64 0.34 -0.3
39 AT3G25940 TFIIB zinc-binding protein -0.63 0.31 -0.3
40 AT2G25590 Plant Tudor-like protein 0.63 0.31 -0.32
41 AT5G57280 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 root initiation defective 2 -0.63 0.31 -0.31
42 AT2G35950 embryo sac development arrest 12 embryo sac development arrest 12 0.63 0.29 -0.32
43 AT4G39920 C-CAP/cofactor C-like domain-containing protein PORCINO, TUBULIN-FOLDING COFACTOR
C		 -0.63 0.3 -0.32
44 AT4G29390 Ribosomal protein S30 family protein -0.62 0.33 -0.31
45 AT5G58230 Transducin/WD40 repeat-like superfamily protein ARABIDOPSIS MULTICOPY SUPRESSOR OF
IRA1, MATERNAL EFFECT EMBRYO
ARREST 70, MULTICOPY SUPRESSOR OF
IRA1		 -0.62 0.32 -0.3
46 AT5G27950 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.62 0.34 -0.3
47 AT5G63200 tetratricopeptide repeat (TPR)-containing protein 0.62 0.3 -0.31
48 AT5G46920 Intron maturase, type II family protein -0.62 0.34 -0.3
49 AT1G43860 sequence-specific DNA binding transcription factors -0.62 0.32 -0.31
50 AT4G05440 temperature sensing protein-related embryo sac development arrest 35 -0.62 0.32 -0.31
51 AT4G31580 serine/arginine-rich 22 RS-containing zinc finger protein
22, RS-containing zinc finger
protein 22, RS-CONTAINING ZINC
FINGER PROTEIN 22,
serine/arginine-rich 22, SRZ22		 -0.62 0.32 -0.33
52 AT3G23610 dual specificity protein phosphatase 1 dual specificity protein
phosphatase 1		 0.62 0.3 -0.32
53 AT5G06660 Protein of unknown function DUF106, transmembrane -0.62 0.31 -0.33
54 AT5G52980 CONTAINS InterPro DOMAIN/s: ATPase, vacuolar ER assembly
factor, Vma12 (InterPro:IPR021013); Has 1807 Blast hits to
1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 -0.62 0.3 -0.32
55 AT3G07230 wound-responsive protein-related -0.61 0.32 -0.32
56 AT3G27550 RNA-binding CRS1 / YhbY (CRM) domain protein -0.61 0.32 -0.32
57 AT3G01820 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.61 0.3 -0.34
58 AT1G21430 Flavin-binding monooxygenase family protein YUC11 0.61 0.3 -0.34
59 AT2G34357 ARM repeat superfamily protein -0.61 0.31 -0.33
60 AT3G29360 UDP-glucose 6-dehydrogenase family protein UDP-glucose dehydrogenase 2 -0.61 0.31 -0.31
61 AT5G42370 Calcineurin-like metallo-phosphoesterase superfamily
protein		 0.61 0.31 -0.32
62 AT3G53520 UDP-glucuronic acid decarboxylase 1 ATUXS1, UDP-glucuronic acid
decarboxylase 1		 -0.61 0.31 -0.3
63 AT2G33845 Nucleic acid-binding, OB-fold-like protein -0.61 0.29 -0.32
64 AT1G16730 unknown protein 6 unknown protein 6 0.61 0.3 -0.31
65 AT3G05420 acyl-CoA binding protein 4 acyl-CoA binding protein 4 -0.61 0.3 -0.32
66 AT5G39900 Small GTP-binding protein -0.61 0.31 -0.32
67 AT3G20990 transposable element gene -0.61 0.33 -0.3
68 AT2G04520 Nucleic acid-binding, OB-fold-like protein -0.61 0.33 -0.31
69 AT3G63400 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family
protein		 -0.61 0.3 -0.32
70 AT3G54400 Eukaryotic aspartyl protease family protein -0.61 0.31 -0.34
71 AT5G52880 F-box family protein 0.61 0.3 -0.34
72 AT4G24270 EMBRYO DEFECTIVE 140 EMBRYO DEFECTIVE 140 -0.61 0.32 -0.29
73 AT3G52930 Aldolase superfamily protein -0.6 0.31 -0.3
74 AT3G55360 3-oxo-5-alpha-steroid 4-dehydrogenase family protein ATTSC13, ECERIFERUM 10, ENOYL-COA
REDUCTASE, TSC13		 -0.6 0.3 -0.31
75 AT3G25545 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; Has 38
Blast hits to 38 proteins in 14 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 38; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 -0.6 0.31 -0.3
76 AT2G22520 unknown protein; Has 186 Blast hits to 37 proteins in 16
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4;
Plants - 17; Viruses - 0; Other Eukaryotes - 165 (source:
NCBI BLink).		 -0.6 0.3 -0.28
77 AT2G37400 Tetratricopeptide repeat (TPR)-like superfamily protein -0.6 0.32 -0.32
78 AT1G13870 calmodulin binding;purine nucleotide binding AtKTI12, DEFORMED ROOTS AND LEAVES
1		 -0.6 0.3 -0.32
79 AT4G32400 Mitochondrial substrate carrier family protein ARABIDOPSIS THALIANA BRITTLE 1,
EMBRYO DEFECTIVE 104, EMBRYO
DEFECTIVE 42, SODIUM
HYPERSENSITIVE 1		 -0.6 0.32 -0.32
80 AT1G62150 Mitochondrial transcription termination factor family
protein		 -0.6 0.33 -0.32
81 AT1G22610 C2 calcium/lipid-binding plant phosphoribosyltransferase
family protein		 -0.6 0.31 -0.31
82 AT4G18400 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 0.6 0.32 -0.29
83 AT1G53770 O-fucosyltransferase family protein 0.6 0.31 -0.3
84 AT4G39990 RAB GTPase homolog A4B GTP-BINDING PROTEIN 3, ATRAB11G,
ARABIDOPSIS THALIANA RAB GTPASE
HOMOLOG A 4B, RAB GTPase homolog
A4B		 -0.6 0.34 -0.34
85 AT5G16320 FRIGIDA like 1 FRIGIDA like 1 -0.6 0.3 -0.33
86 AT2G01970 Endomembrane protein 70 protein family -0.6 0.31 -0.34
87 AT1G69960 serine/threonine protein phosphatase 2A serine/threonine protein
phosphatase 2A		 -0.6 0.3 -0.33
88 AT2G37020 Translin family protein -0.6 0.31 -0.32
89 AT3G15000 cobalt ion binding -0.6 0.3 -0.32
90 AT4G14360 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 -0.6 0.31 -0.32
91 AT4G01280 Homeodomain-like superfamily protein 0.59 0.33 -0.31
92 AT4G14530 BEST Arabidopsis thaliana protein match is: AGAMOUS-like 97
(TAIR:AT1G46408.1); Has 21 Blast hits to 21 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.59 0.33 -0.32
93 AT3G28890 receptor like protein 43 receptor like protein 43, receptor
like protein 43		 0.58 0.32 -0.32
94 AT3G24010 RING/FYVE/PHD zinc finger superfamily protein ARABIDOPSIS THALIANA INHIBITOR OF
GROWTH 1, INHIBITOR OF GROWTH 1		 0.58 0.31 -0.34
95 AT3G52060 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein		 0.58 0.3 -0.33
96 AT2G29970 Double Clp-N motif-containing P-loop nucleoside
triphosphate hydrolases superfamily protein		 0.57 0.31 -0.35
97 AT5G45370 nodulin MtN21 /EamA-like transporter family protein 0.57 0.33 -0.33
98 AT3G23640 heteroglycan glucosidase 1 heteroglycan glucosidase 1 0.56 0.31 -0.3
99 AT1G33813 transposable element gene 0.56 0.34 -0.31
100 AT5G22720 F-box/RNI-like superfamily protein 0.55 0.32 -0.32
101 AT5G13590 unknown protein; Has 150 Blast hits to 121 proteins in 42
species: Archae - 0; Bacteria - 8; Metazoa - 80; Fungi - 5;
Plants - 17; Viruses - 0; Other Eukaryotes - 40 (source:
NCBI BLink).		 0.54 0.29 -0.31
102 AT4G15780 vesicle-associated membrane protein 724 vesicle-associated membrane
protein 724, vesicle-associated
membrane protein 724		 0.54 0.3 -0.32
103 AT5G51290 Diacylglycerol kinase family protein 0.54 0.33 -0.3
104 AT5G11910 alpha/beta-Hydrolases superfamily protein 0.54 0.32 -0.32
105 AT4G36510 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; Has 2 Blast hits to 2 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.54 0.32 -0.31
106 AT5G55900 Sucrase/ferredoxin-like family protein 0.53 0.32 -0.31
107 AT3G23130 C2H2 and C2HC zinc fingers superfamily protein FLORAL DEFECTIVE 10, FLORAL ORGAN
NUMBER 1, SUPERMAN		 0.53 0.31 -0.32
108 AT2G01280 Cyclin/Brf1-like TBP-binding protein maternal effect embryo arrest 65 0.53 0.32 -0.33
109 AT4G12990 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
plant-type cell wall; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; Has 4 Blast hits to 4
proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 0.53 0.31 -0.31
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
110 C0097 Glucosamine-6-phosphate D-Glucosamine-6-phosphate D-Glucosamine-6-phosphate UDP-N-acetyl-D-glucosamine biosynthesis II 0.63 0.32 -0.31 C0097
111 C0195 Phenylpyruvic acid - Phenylpyruvate phenylalanine degradation III 0.6 0.45 -0.43 C0195
112 C0005 β-Fructose-6-phosphate β-D-Fructose-6-phosphate D-Fructose-6-phosphate starch biosynthesis,
Rubisco shunt,
Calvin-Benson-Bassham cycle,
mannitol degradation II,
ascorbate biosynthesis I (L-galactose pathway),
UDP-N-acetyl-D-glucosamine biosynthesis II,
GDP-mannose biosynthesis,
mannose degradation,
sucrose biosynthesis I,
sucrose degradation III,
glycolysis IV (plant cytosol),
pentose phosphate pathway (non-oxidative branch),
glycolysis I,
superpathway of sucrose and starch metabolism II (photosynthetic tissue),
D-mannose degradation,
gluconeogenesis I 		0.58 0.32 -0.33 C0005