AT1G04240 : indole-3-acetic acid inducible 3
Query Information
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AGICode AT1G04240
Description AUX/IAA transcriptional regulator family protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT1G04240 AUX/IAA transcriptional regulator family protein indole-3-acetic acid inducible 3,
SHORT HYPOCOTYL 2		 1 0.33 -0.3
2 AT5G46180 ornithine-delta-aminotransferase ornithine-delta-aminotransferase -0.84 0.31 -0.3
3 AT5G55120 galactose-1-phosphate guanylyltransferase
(GDP)s;GDP-D-glucose phosphorylases;quercetin
4'-O-glucosyltransferases		 VITAMIN C DEFECTIVE 5 -0.82 0.32 -0.32
4 AT3G06810 acyl-CoA dehydrogenase-related IBA-RESPONSE 3 -0.81 0.28 -0.31
5 AT3G28050 nodulin MtN21 /EamA-like transporter family protein -0.81 0.32 -0.32
6 AT1G79690 nudix hydrolase homolog 3 nudix hydrolase homolog 3, nudix
hydrolase homolog 3		 -0.81 0.31 -0.34
7 AT5G24160 squalene monoxygenase 6 squalene monoxygenase 6 -0.8 0.31 -0.34
8 AT1G55850 cellulose synthase like E1 ATCSLE1, cellulose synthase like
E1		 -0.79 0.32 -0.33
9 AT5G42850 Thioredoxin superfamily protein -0.79 0.33 -0.32
10 AT4G24690 ubiquitin-associated (UBA)/TS-N domain-containing protein /
octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein		 Arabidopsis thaliana next to BRCA1
gene 1, next to BRCA1 gene 1		 -0.79 0.32 -0.31
11 AT1G30360 Early-responsive to dehydration stress protein (ERD4) early-responsive to dehydration 4 0.79 0.31 -0.32
12 AT5G41060 DHHC-type zinc finger family protein 0.79 0.31 -0.31
13 AT5G16450 Ribonuclease E inhibitor RraA/Dimethylmenaquinone
methyltransferase		 -0.78 0.31 -0.33
14 AT2G36950 Heavy metal transport/detoxification superfamily protein -0.78 0.3 -0.31
15 AT2G41480 Peroxidase superfamily protein -0.78 0.32 -0.33
16 AT1G27980 dihydrosphingosine phosphate lyase ATDPL1, dihydrosphingosine
phosphate lyase		 -0.77 0.31 -0.32
17 AT1G21880 lysm domain GPI-anchored protein 1 precursor lysm domain GPI-anchored protein 1
precursor		 0.77 0.34 -0.33
18 AT5G48900 Pectin lyase-like superfamily protein 0.77 0.32 -0.33
19 AT2G40200 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 -0.77 0.31 -0.29
20 AT3G19515 CONTAINS InterPro DOMAIN/s: Apoptosis inhibitory 5
(InterPro:IPR008383); BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G23935.1); Has 546 Blast
hits to 394 proteins in 84 species: Archae - 0; Bacteria -
3; Metazoa - 210; Fungi - 15; Plants - 143; Viruses - 0;
Other Eukaryotes - 175 (source: NCBI BLink).		 0.77 0.31 -0.32
21 AT1G17020 senescence-related gene 1 SENESCENCE-RELATED GENE 1,
senescence-related gene 1		 -0.76 0.32 -0.3
22 AT1G76390 ARM repeat superfamily protein plant U-box 43 -0.76 0.31 -0.32
23 AT4G29010 Enoyl-CoA hydratase/isomerase family ABNORMAL INFLORESCENCE MERISTEM -0.76 0.32 -0.31
24 AT5G19530 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 ACAULIS 5 0.76 0.3 -0.31
25 AT5G62680 Major facilitator superfamily protein -0.76 0.31 -0.32
26 AT1G20560 acyl activating enzyme 1 acyl activating enzyme 1 -0.75 0.32 -0.31
27 AT1G72800 RNA-binding (RRM/RBD/RNP motifs) family protein -0.75 0.33 -0.31
28 AT2G02970 GDA1/CD39 nucleoside phosphatase family protein -0.75 0.33 -0.31
29 AT4G29490 Metallopeptidase M24 family protein -0.75 0.32 -0.34
30 AT1G48790 associated molecule with the SH3 domain of STAM 1 associated molecule with the SH3
domain of STAM 1		 -0.75 0.3 -0.31
31 AT3G21750 UDP-glucosyl transferase 71B1 UDP-glucosyl transferase 71B1 -0.75 0.32 -0.31
32 AT5G13460 IQ-domain 11 IQ-domain 11 0.74 0.31 -0.32
33 AT5G11720 Glycosyl hydrolases family 31 protein -0.74 0.32 -0.3
34 AT1G56700 Peptidase C15, pyroglutamyl peptidase I-like -0.74 0.3 -0.33
35 AT4G23100 glutamate-cysteine ligase ATECS1, CADMIUM SENSITIVE 2,
glutamate-cysteine ligase, GSHA,
PHYTOALEXIN DEFICIENT 2, ROOT
MERISTEMLESS 1		 -0.74 0.33 -0.3
36 AT5G19670 Exostosin family protein 0.74 0.33 -0.3
37 AT3G11660 NDR1/HIN1-like 1 NDR1/HIN1-like 1 -0.74 0.31 -0.29
38 AT1G04970 lipid-binding serum glycoprotein family protein -0.74 0.34 -0.32
39 AT5G01010 CONTAINS InterPro DOMAIN/s: GOLD (InterPro:IPR009038); Has
172 Blast hits to 172 proteins in 43 species: Archae - 0;
Bacteria - 0; Metazoa - 95; Fungi - 0; Plants - 63; Viruses
- 0; Other Eukaryotes - 14 (source: NCBI BLink).		 -0.74 0.31 -0.34
40 AT5G64200 ortholog of human splicing factor SC35 ortholog of human splicing factor
SC35, ARABIDOPSIS THALIANA
ORTHOLOG OF HUMAN SPLICING FACTOR
SC35, ortholog of human splicing
factor SC35		 0.74 0.31 -0.3
41 AT5G62210 Embryo-specific protein 3, (ATS3) 0.73 0.32 -0.3
42 AT5G23810 amino acid permease 7 amino acid permease 7 -0.73 0.31 -0.32
43 AT1G55090 carbon-nitrogen hydrolase family protein -0.73 0.32 -0.33
44 AT2G29350 senescence-associated gene 13 senescence-associated gene 13 -0.73 0.33 -0.34
45 AT5G27350 Major facilitator superfamily protein SFP1 -0.73 0.31 -0.32
46 AT4G13360 ATP-dependent caseinolytic (Clp) protease/crotonase family
protein		 -0.73 0.33 -0.31
47 AT5G65750 2-oxoglutarate dehydrogenase, E1 component -0.73 0.29 -0.31
48 AT2G43510 trypsin inhibitor protein 1 trypsin inhibitor protein 1,
trypsin inhibitor protein 1		 -0.73 0.32 -0.34
49 AT1G29500 SAUR-like auxin-responsive protein family 0.73 0.32 -0.33
50 AT3G60900 FASCICLIN-like arabinogalactan-protein 10 FASCICLIN-like
arabinogalactan-protein 10		 0.73 0.33 -0.32
51 AT1G01490 Heavy metal transport/detoxification superfamily protein -0.73 0.32 -0.3
52 AT1G04440 casein kinase like 13 casein kinase like 13 -0.72 0.33 -0.32
53 AT1G14120 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.72 0.34 -0.32
54 AT5G03455 Rhodanese/Cell cycle control phosphatase superfamily
protein		 ARSENATE REDUCTASE 2, ARATH;CDC25,
CDC25		 -0.72 0.33 -0.32
55 AT3G51430 Calcium-dependent phosphotriesterase superfamily protein STRICTOSIDINE SYNTHASE-LIKE 5,
YELLOW-LEAF-SPECIFIC GENE 2		 -0.72 0.32 -0.3
56 AT2G17220 Protein kinase superfamily protein kinase 3 -0.72 0.31 -0.3
57 AT3G30390 Transmembrane amino acid transporter family protein -0.72 0.33 -0.32
58 AT1G64900 cytochrome P450, family 89, subfamily A, polypeptide 2 CYP89, cytochrome P450, family 89,
subfamily A, polypeptide 2		 -0.72 0.3 -0.31
59 AT5G25460 Protein of unknown function, DUF642 0.72 0.32 -0.33
60 AT4G19450 Major facilitator superfamily protein -0.72 0.32 -0.31
61 AT4G31360 selenium binding 0.72 0.3 -0.32
62 AT3G03840 SAUR-like auxin-responsive protein family 0.72 0.32 -0.31
63 AT1G61120 terpene synthase 04 GERANYLLINALOOL SYNTHASE, terpene
synthase 04, TERPENE SYNTHASE 4		 -0.72 0.3 -0.34
64 AT4G01430 nodulin MtN21 /EamA-like transporter family protein -0.72 0.31 -0.31
65 AT1G04250 AUX/IAA transcriptional regulator family protein AUXIN RESISTANT 3, indole-3-acetic
acid inducible 17		 0.72 0.3 -0.32
66 AT4G16330 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.71 0.32 -0.3
67 AT5G53820 Late embryogenesis abundant protein (LEA) family protein -0.71 0.33 -0.31
68 AT1G07630 pol-like 5 pol-like 5 -0.71 0.32 -0.32
69 AT4G05160 AMP-dependent synthetase and ligase family protein -0.71 0.32 -0.32
70 AT2G21410 vacuolar proton ATPase A2 vacuolar proton ATPase A2 -0.71 0.32 -0.33
71 AT4G29210 gamma-glutamyl transpeptidase 4 gamma-glutamyl transpeptidase 3,
gamma-glutamyl transpeptidase 4		 -0.71 0.29 -0.31
72 AT5G04540 Myotubularin-like phosphatases II superfamily -0.71 0.31 -0.34
73 AT3G55005 tonneau 1b (TON1b) tonneau 1b 0.71 0.3 -0.32
74 AT3G62630 Protein of unknown function (DUF1645) 0.71 0.3 -0.34
75 AT5G47760 2-phosphoglycolate phosphatase 2 2-phosphoglycolate phosphatase 2,
ATPK5, PGLP2, 2-phosphoglycolate
phosphatase 2		 -0.71 0.33 -0.32
76 AT4G16515 Encodes a root meristem growth factor (RGF). Belongs to a
family of functionally redundant homologous peptides that
are secreted, tyrosine-sulfated, and expressed mainly in
the stem cell area and the innermost layer of central
columella cells. RGFs are required for maintenance of the
root stem cell niche and transit amplifying cell
proliferation. Members of this family include: At5g60810
(RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350
(RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240
(RGF7), At2g03830 (RGF8) and At5g64770 (RGF9).		 root meristem growth factor 6 0.71 0.34 -0.32
77 AT3G51970 acyl-CoA sterol acyl transferase 1 acyl-CoA sterol acyl transferase
1, ATASAT1, ARABIDOPSIS THALIANA
STEROL O-ACYLTRANSFERASE 1		 -0.71 0.31 -0.32
78 AT3G06450 HCO3- transporter family -0.7 0.29 -0.31
79 AT3G14920 Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A
protein		 -0.7 0.31 -0.32
80 AT2G18950 homogentisate phytyltransferase 1 HOMOGENTISATE PHYTYLTRANSFERASE,
homogentisate phytyltransferase 1,
TPT1, VITAMIN E 2		 -0.7 0.3 -0.31
81 AT4G36860 LIM domain-containing protein DA1-RELATED PROTEIN 1 -0.7 0.32 -0.3
82 AT3G14890 phosphoesterase 0.7 0.31 -0.32
83 AT1G69410 eukaryotic elongation factor 5A-3 EUKARYOTIC ELONGATION FACTOR 5A-3,
eukaryotic elongation factor 5A-3		 -0.7 0.32 -0.3
84 AT3G08030 Protein of unknown function, DUF642 0.7 0.32 -0.31
85 AT3G26000 Ribonuclease inhibitor -0.7 0.33 -0.31
86 AT3G04520 threonine aldolase 2 threonine aldolase 2 -0.7 0.33 -0.32
87 AT3G03120 ADP-ribosylation factor B1C ADP-ribosylation factor B1C,
ADP-ribosylation factor B1C		 -0.7 0.3 -0.31
88 AT3G03990 alpha/beta-Hydrolases superfamily protein -0.7 0.29 -0.31
89 AT5G22270 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G11600.1); Has 136 Blast hits
to 136 proteins in 15 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 136; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.7 0.32 -0.3
90 AT4G14430 indole-3-butyric acid response 10 ARABIDOPSIS THALIANA DELTA(3),
DELTA(2)-ENOYL COA ISOMERASE 2,
ENOYL-COA HYDRATASE/ISOMERASE B,
DELTA(3), DELTA(2)-ENOYL COA
ISOMERASE 2, indole-3-butyric acid
response 10, PEC12		 -0.7 0.29 -0.32
91 AT5G44240 aminophospholipid ATPase 2 aminophospholipid ATPase 2 -0.69 0.31 -0.3
92 AT5G26600 Pyridoxal phosphate (PLP)-dependent transferases
superfamily protein		 -0.69 0.3 -0.31
93 AT2G28870 unknown protein; Has 34 Blast hits to 34 proteins in 9
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.69 0.32 -0.3
94 AT3G53180 glutamate-ammonia ligases;catalytics;glutamate-ammonia
ligases		 nodulin/glutamine synthase-like
protein		 -0.69 0.32 -0.33
95 AT4G14560 indole-3-acetic acid inducible AUXIN RESISTANT 5, indole-3-acetic
acid inducible		 0.69 0.31 -0.34
96 AT5G15160 BANQUO 2 BASIC HELIX-LOOP-HELIX PROTEIN
134, BANQUO 2		 0.69 0.31 -0.32
97 AT3G56950 small and basic intrinsic protein 2;1 SMALL AND BASIC INTRINSIC PROTEIN
2, small and basic intrinsic
protein 2;1		 -0.69 0.32 -0.31
98 AT1G68440 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G25400.2); Has 86 Blast hits
to 86 proteins in 29 species: Archae - 0; Bacteria - 6;
Metazoa - 27; Fungi - 11; Plants - 24; Viruses - 0; Other
Eukaryotes - 18 (source: NCBI BLink).		 -0.69 0.31 -0.32
99 AT2G17560 high mobility group B4 high mobility group B4, NFD04,
NUCLEOSOME/CHROMATIN ASSEMBLY
FACTOR D4		 0.69 0.32 -0.32
100 AT3G09730 unknown protein; Has 1171 Blast hits to 1097 proteins in
212 species: Archae - 14; Bacteria - 83; Metazoa - 583;
Fungi - 105; Plants - 149; Viruses - 14; Other Eukaryotes -
223 (source: NCBI BLink).		 0.69 0.3 -0.32
101 AT3G27820 monodehydroascorbate reductase 4 MONODEHYDROASCORBATE REDUCTASE 4,
monodehydroascorbate reductase 4		 -0.69 0.32 -0.29
102 AT4G19430 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED
DURING: 13 growth stages; Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 -0.69 0.28 -0.32
103 AT4G28180 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: N-terminal protein myristoylation; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 15 plant
structures; EXPRESSED DURING: 8 growth stages; Has 1508
Blast hits to 1315 proteins in 223 species: Archae - 4;
Bacteria - 127; Metazoa - 687; Fungi - 310; Plants - 142;
Viruses - 28; Other Eukaryotes - 210 (source: NCBI BLink).		 0.69 0.32 -0.32
104 AT3G13570 SC35-like splicing factor 30A SC35-like splicing factor 30A,
SC35-like splicing factor 30A		 0.68 0.33 -0.3
105 AT3G63200 PATATIN-like protein 9 PLA IIIB, PATATIN-like protein 9 0.68 0.33 -0.31
106 AT1G29510 SAUR-like auxin-responsive protein family SMALL AUXIN UPREGULATED 68 0.68 0.31 -0.32
107 AT5G08640 flavonol synthase 1 ATFLS1, FLAVONOL SYNTHASE,
flavonol synthase 1		 0.68 0.32 -0.31
108 AT5G55480 SHV3-like 1 Glycerophosphodiester
phosphodiesterase (GDPD) like 4,
glycerophosphodiesterase-like 1,
SHV3-like 1		 0.67 0.31 -0.33
109 AT1G78100 F-box family protein auxin up-regulated f-box protein 1 0.67 0.3 -0.32
110 AT4G17180 O-Glycosyl hydrolases family 17 protein 0.67 0.33 -0.33
111 AT4G02820 Pentatricopeptide repeat (PPR) superfamily protein 0.66 0.32 -0.3
112 AT5G06930 LOCATED IN: chloroplast; EXPRESSED IN: 15 plant structures;
EXPRESSED DURING: 7 growth stages; BEST Arabidopsis
thaliana protein match is: nucleolar protein gar2-related
(TAIR:AT2G42320.2); Has 3369 Blast hits to 1526 proteins in
313 species: Archae - 2; Bacteria - 910; Metazoa - 754;
Fungi - 336; Plants - 137; Viruses - 11; Other Eukaryotes -
1219 (source: NCBI BLink).		 0.66 0.31 -0.33
113 AT1G18040 cyclin-dependent kinase D1;3 CYCLIN-DEPENDENT KINASE D1;3,
CAK2AT, cyclin-dependent kinase
D1;3		 0.66 0.3 -0.33
114 AT1G15660 centromere protein C CENP-C HOMOLOGUE, centromere
protein C		 0.66 0.33 -0.32
115 AT4G09890 Protein of unknown function (DUF3511) 0.66 0.31 -0.31
116 AT1G12580 phosphoenolpyruvate carboxylase-related kinase 1 phosphoenolpyruvate
carboxylase-related kinase 1		 0.66 0.32 -0.33
117 AT1G29440 SAUR-like auxin-responsive protein family 0.65 0.29 -0.31
118 AT4G29020 glycine-rich protein 0.65 0.32 -0.31
119 AT1G72310 RING/U-box superfamily protein ATL3 0.64 0.31 -0.31
120 AT3G54250 GHMP kinase family protein 0.64 0.29 -0.31
121 AT5G65700 Leucine-rich receptor-like protein kinase family protein BARELY ANY MERISTEM 1 0.64 0.3 -0.3
122 AT2G26710 Cytochrome P450 superfamily protein PHYB ACTIVATION TAGGED SUPPRESSOR
1, CYP72B1, CYP734A1		 0.64 0.3 -0.3
123 AT3G63300 FORKED 1 FORKED 1 0.64 0.34 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
124 C0118 Hyperoside - Quercetin-3-glucoside quercetin glucoside biosynthesis (Arabidopsis),
rutin biosynthesis 		0.77 0.45 -0.44 C0118
125 C0007 β-Sitosterol - Sitosterol plant sterol biosynthesis 0.77 0.46 -0.45 C0007
126 C0093 Galactinol dihydrate - Galactinol galactosylcyclitol biosynthesis,
stachyose biosynthesis,
ajugose biosynthesis I (galactinol-dependent) 		0.69 0.45 -0.44 C0093