AT2G36010 : ATE2FA
Query Information
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AGICode AT2G36010
Description E2F transcription factor 3
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT2G36010 E2F transcription factor 3 ATE2FA, E2F transcription factor 3 1 0.32 -0.32
2 AT1G05070 Protein of unknown function (DUF1068) 0.77 0.34 -0.33
3 AT2G45660 AGAMOUS-like 20 AGAMOUS-like 20, SUPPRESSOR OF
OVEREXPRESSION OF CO 1, SUPPRESSOR
OF OVEREXPRESSION OF CO 1		 0.76 0.33 -0.3
4 AT1G59950 NAD(P)-linked oxidoreductase superfamily protein -0.74 0.32 -0.33
5 AT1G54410 dehydrin family protein 0.73 0.31 -0.32
6 AT4G24960 HVA22 homologue D ARABIDOPSIS THALIANA HVA22
HOMOLOGUE D, HVA22 homologue D		 0.72 0.3 -0.29
7 AT5G12050 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G13980.1); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 0.72 0.31 -0.3
8 AT1G09940 Glutamyl-tRNA reductase family protein HEMA2 -0.72 0.31 -0.32
9 AT1G13930 Involved in response to salt stress. Knockout mutants are
hypersensitive to salt stress.		 0.71 0.32 -0.33
10 AT1G07360 CCCH-type zinc fingerfamily protein with RNA-binding domain MOS4-associated complex subunit 5A 0.71 0.32 -0.32
11 AT2G17560 high mobility group B4 high mobility group B4, NFD04,
NUCLEOSOME/CHROMATIN ASSEMBLY
FACTOR D4		 0.71 0.32 -0.32
12 AT5G62880 RAC-like 10 RAC-like 10, ARABIDOPSIS THALIANA
RAC-LIKE 10, RHO-RELATED PROTEIN
FROM PLANTS 11, RAC-like 10,
RHO-related protein from plants 11		 0.7 0.31 -0.33
13 AT4G04330 Chaperonin-like RbcX protein AtRbcX1, homologue of
cyanobacterial RbcX 1		 0.7 0.31 -0.33
14 AT2G35550 basic pentacysteine 7 BASIC PENTACYSTEINE 7, BBR, basic
pentacysteine 7		 -0.7 0.31 -0.32
15 AT5G11150 vesicle-associated membrane protein 713 vesicle-associated membrane
protein 713, VAMP713,
vesicle-associated membrane
protein 713		 0.7 0.33 -0.31
16 AT1G55850 cellulose synthase like E1 ATCSLE1, cellulose synthase like
E1		 -0.69 0.3 -0.32
17 AT1G48580 unknown protein; Has 91 Blast hits to 91 proteins in 40
species: Archae - 0; Bacteria - 0; Metazoa - 49; Fungi - 0;
Plants - 28; Viruses - 0; Other Eukaryotes - 14 (source:
NCBI BLink).		 0.69 0.28 -0.3
18 AT1G32860 Glycosyl hydrolase superfamily protein 0.69 0.33 -0.31
19 AT2G38670 phosphorylethanolamine cytidylyltransferase 1 phosphorylethanolamine
cytidylyltransferase 1		 0.69 0.32 -0.34
20 AT3G03590 SWIB/MDM2 domain superfamily protein 0.69 0.3 -0.3
21 AT2G26390 Serine protease inhibitor (SERPIN) family protein -0.69 0.32 -0.31
22 AT5G56740 histone acetyltransferase of the GNAT family 2 HAC07, HAC7, HAG02, histone
acetyltransferase of the GNAT
family 2		 0.69 0.33 -0.29
23 AT4G16442 Uncharacterised protein family (UPF0497) 0.69 0.31 -0.33
24 AT3G45980 Histone superfamily protein HISTONE H2B, HTB9 0.69 0.3 -0.32
25 AT3G28050 nodulin MtN21 /EamA-like transporter family protein -0.68 0.3 -0.33
26 AT4G36860 LIM domain-containing protein DA1-RELATED PROTEIN 1 -0.68 0.33 -0.31
27 AT5G58600 Plant protein of unknown function (DUF828) POWDERY MILDEW RESISTANT 5,
TRICHOME BIREFRINGENCE-LIKE 44		 0.68 0.32 -0.31
28 AT3G58690 Protein kinase superfamily protein 0.68 0.31 -0.32
29 AT4G08330 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN: plasma
membrane; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 14 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT2G17705.1); Has 98 Blast
hits to 98 proteins in 13 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.67 0.32 -0.34
30 AT3G52130 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 0.67 0.32 -0.32
31 AT5G53360 TRAF-like superfamily protein -0.67 0.32 -0.32
32 AT2G38730 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family
protein		 0.67 0.33 -0.33
33 AT4G38580 farnesylated protein 6 farnesylated protein 6,
farnesylated protein 6, HEAVY
METAL ASSOCIATED ISOPRENYLATED
PLANT PROTEIN 26		 0.67 0.29 -0.31
34 AT2G28720 Histone superfamily protein 0.67 0.31 -0.31
35 AT4G28320 Glycosyl hydrolase superfamily protein AtMAN5, endo-beta-mannase 5 0.67 0.33 -0.34
36 AT1G05710 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 -0.67 0.3 -0.3
37 AT3G19515 CONTAINS InterPro DOMAIN/s: Apoptosis inhibitory 5
(InterPro:IPR008383); BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G23935.1); Has 546 Blast
hits to 394 proteins in 84 species: Archae - 0; Bacteria -
3; Metazoa - 210; Fungi - 15; Plants - 143; Viruses - 0;
Other Eukaryotes - 175 (source: NCBI BLink).		 0.67 0.31 -0.32
38 AT2G19130 S-locus lectin protein kinase family protein -0.66 0.32 -0.32
39 AT5G45830 delay of germination 1 ATDOG1, DELAY OF GERMINATION 1,
GLUCOSE SENSING QTL 5		 0.66 0.32 -0.33
40 AT1G15660 centromere protein C CENP-C HOMOLOGUE, centromere
protein C		 0.66 0.34 -0.31
41 AT4G16650 O-fucosyltransferase family protein 0.66 0.29 -0.3
42 AT3G51970 acyl-CoA sterol acyl transferase 1 acyl-CoA sterol acyl transferase
1, ATASAT1, ARABIDOPSIS THALIANA
STEROL O-ACYLTRANSFERASE 1		 -0.66 0.33 -0.31
43 AT4G18420 transposable element gene -0.66 0.3 -0.33
44 AT4G15410 serine/threonine protein phosphatase 2A 55 kDa regulatory
subunit B prime gamma		 serine/threonine protein
phosphatase 2A 55 kDa regulatory
subunit B prime gamma		 0.66 0.31 -0.3
45 AT3G22170 far-red elongated hypocotyls 3 far-red elongated hypocotyls 3 -0.66 0.34 -0.3
46 AT1G09350 galactinol synthase 3 galactinol synthase 3, galactinol
synthase 3		 0.65 0.34 -0.3
47 AT1G77610 EamA-like transporter family protein 0.65 0.3 -0.31
48 AT2G30800 helicase in vascular tissue and tapetum ATVT-1, helicase in vascular
tissue and tapetum		 0.65 0.31 -0.34
49 AT5G11530 embryonic flower 1 (EMF1) embryonic flower 1 0.65 0.32 -0.3
50 AT4G13640 Homeodomain-like superfamily protein unfertilized embryo sac 16 0.65 0.31 -0.32
51 AT2G15970 cold regulated 413 plasma membrane 1 ARABIDOPSIS THALIANA
COLD-REGULATED413 PLASMA MEMBRANE
1, CYCLOPHILLIN 19, cold regulated
413 plasma membrane 1, FL3-5A3,
WCOR413, WCOR413-LIKE		 0.65 0.31 -0.31
52 AT1G49560 Homeodomain-like superfamily protein 0.65 0.32 -0.32
53 AT4G04560 transposable element gene 0.65 0.32 -0.3
54 AT5G64200 ortholog of human splicing factor SC35 ortholog of human splicing factor
SC35, ARABIDOPSIS THALIANA
ORTHOLOG OF HUMAN SPLICING FACTOR
SC35, ortholog of human splicing
factor SC35		 0.65 0.31 -0.31
55 AT4G37470 alpha/beta-Hydrolases superfamily protein 0.65 0.33 -0.33
56 AT4G39650 gamma-glutamyl transpeptidase 2 gamma-glutamyl transpeptidase 2 -0.64 0.33 -0.29
57 AT1G14685 basic pentacysteine 2 BASIC PENTACYSTEINE 2, BBR/BPC2,
basic pentacysteine 2		 0.64 0.31 -0.34
58 AT1G35780 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G78150.2); Has 145 Blast hits
to 144 proteins in 16 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 145; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.64 0.32 -0.32
59 AT2G40650 PRP38 family protein 0.64 0.3 -0.3
60 AT5G43480 unknown protein; Has 1807 Blast hits to 1807 proteins in
277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi
- 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339
(source: NCBI BLink).		 0.64 0.34 -0.34
61 AT1G08970 nuclear factor Y, subunit C9 HEME ACTIVATED PROTEIN 5C, nuclear
factor Y, subunit C9		 0.64 0.32 -0.33
62 AT2G22760 basic helix-loop-helix (bHLH) DNA-binding superfamily
protein		 -0.64 0.3 -0.32
63 AT1G56290 CwfJ-like family protein 0.63 0.3 -0.31
64 AT3G50670 U1 small nuclear ribonucleoprotein-70K U1 small nuclear
ribonucleoprotein-70K, U1SNRNP		 0.63 0.31 -0.31
65 AT4G38240 alpha-1,3-mannosyl-glycoprotein
beta-1,2-N-acetylglucosaminyltransferase, putative		 COMPLEX GLYCAN LESS, COMPLEX
GLYCAN LESS 1,
N-ACETYLGLUCOSAMINYLTRANSFERASE I		 -0.63 0.31 -0.3
66 AT2G43420 3-beta hydroxysteroid dehydrogenase/isomerase family
protein		 -0.63 0.31 -0.32
67 AT4G31360 selenium binding 0.63 0.3 -0.33
68 AT4G04480 unknown protein; LOCATED IN: chloroplast; EXPRESSED IN:
flower, pollen tube; EXPRESSED DURING: petal
differentiation and expansion stage; BEST Arabidopsis
thaliana protein match is: F-box family protein with a
domain of unknown function (DUF295) (TAIR:AT4G22030.1); Has
78 Blast hits to 78 proteins in 10 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 -0.63 0.31 -0.33
69 AT2G17480 Seven transmembrane MLO family protein MILDEW RESISTANCE LOCUS O 8,
MILDEW RESISTANCE LOCUS O 8		 -0.63 0.32 -0.32
70 AT1G57600 MBOAT (membrane bound O-acyl transferase) family protein -0.63 0.32 -0.31
71 AT5G56140 RNA-binding KH domain-containing protein 0.63 0.31 -0.3
72 AT5G30480 transposable element gene 0.62 0.3 -0.31
73 AT3G01360 Family of unknown function (DUF716) -0.62 0.32 -0.32
74 AT1G66170 RING/FYVE/PHD zinc finger superfamily protein MALE MEIOCYTE DEATH 1 -0.62 0.3 -0.31
75 AT2G44150 histone-lysine N-methyltransferase ASHH3 histone-lysine N-methyltransferase
ASHH3, SET DOMAIN-CONTAINING
PROTEIN 7		 0.62 0.31 -0.32
76 AT2G33730 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.62 0.32 -0.31
77 AT1G74390 Polynucleotidyl transferase, ribonuclease H-like
superfamily protein		 0.62 0.34 -0.33
78 AT2G20880 Integrase-type DNA-binding superfamily protein AtERF53, ERF domain 53 -0.62 0.31 -0.32
79 AT1G59600 ZCW7 ZCW7 0.62 0.31 -0.32
80 AT1G65220 ARM repeat superfamily protein 0.62 0.34 -0.32
81 AT5G09950 Tetratricopeptide repeat (TPR)-like superfamily protein 0.61 0.33 -0.32
82 AT5G06100 myb domain protein 33 ATMYB33, myb domain protein 33 -0.61 0.32 -0.3
83 AT4G29000 Tesmin/TSO1-like CXC domain-containing protein 0.61 0.31 -0.32
84 AT2G42760 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF1685 (InterPro:IPR012881); Has 170
Blast hits to 164 proteins in 34 species: Archae - 0;
Bacteria - 1; Metazoa - 26; Fungi - 10; Plants - 107;
Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).		 -0.61 0.33 -0.31
85 AT1G57906 unknown protein; BEST Arabidopsis thaliana protein match
is: F-box family protein with a domain of unknown function
(DUF295) (TAIR:AT2G17690.1); Has 57 Blast hits to 57
proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 57; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 0.61 0.33 -0.32
86 AT3G62890 Pentatricopeptide repeat (PPR) superfamily protein 0.61 0.32 -0.33
87 AT2G32590 LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures;
EXPRESSED DURING: 9 growth stages; CONTAINS InterPro
DOMAIN/s: Barren (InterPro:IPR008418); Has 467 Blast hits
to 447 proteins in 202 species: Archae - 0; Bacteria - 4;
Metazoa - 147; Fungi - 168; Plants - 39; Viruses - 1; Other
Eukaryotes - 108 (source: NCBI BLink).		 EMBRYO DEFECTIVE 2795 0.61 0.33 -0.31
88 AT3G28430 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; EXPRESSED IN: 17 plant structures; EXPRESSED
DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function FPL (InterPro:IPR019155); Has
243 Blast hits to 233 proteins in 101 species: Archae - 0;
Bacteria - 0; Metazoa - 110; Fungi - 0; Plants - 53;
Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).		 -0.61 0.31 -0.32
89 AT1G06520 glycerol-3-phosphate acyltransferase 1 ATGPAT1, glycerol-3-phosphate
acyltransferase 1		 -0.61 0.31 -0.31
90 AT1G31910 GHMP kinase family protein -0.61 0.32 -0.31
91 AT5G17460 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: response to salt stress; LOCATED IN:
mitochondrion; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.61 0.32 -0.33
92 AT4G40000 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.61 0.33 -0.3
93 AT4G16515 Encodes a root meristem growth factor (RGF). Belongs to a
family of functionally redundant homologous peptides that
are secreted, tyrosine-sulfated, and expressed mainly in
the stem cell area and the innermost layer of central
columella cells. RGFs are required for maintenance of the
root stem cell niche and transit amplifying cell
proliferation. Members of this family include: At5g60810
(RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350
(RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240
(RGF7), At2g03830 (RGF8) and At5g64770 (RGF9).		 root meristem growth factor 6 0.61 0.3 -0.3
94 AT2G45930 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT4G16090.1); Has 161 Blast hits to
161 proteins in 2 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 161; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.61 0.33 -0.32
95 AT1G61070 low-molecular-weight cysteine-rich 66 low-molecular-weight cysteine-rich
66, PLANT DEFENSIN 2.4		 0.61 0.33 -0.32
96 AT3G09020 alpha 1,4-glycosyltransferase family protein -0.6 0.32 -0.3
97 AT5G52690 Copper transport protein family 0.6 0.29 -0.29
98 AT2G25760 Protein kinase family protein -0.6 0.32 -0.32
99 AT2G01300 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G15010.1); Has 73 Blast hits
to 73 proteins in 12 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.6 0.3 -0.32
100 AT2G11830 transposable element gene 0.6 0.32 -0.32
101 AT5G48290 Heavy metal transport/detoxification superfamily protein -0.6 0.3 -0.31
102 AT5G54250 cyclic nucleotide-gated cation channel 4 cyclic nucleotide-gated cation
channel 4, cyclic nucleotide-gated
cation channel 4, DEFENSE, NO
DEATH 2, HLM1		 -0.6 0.3 -0.3
103 AT2G14420 transposable element gene -0.6 0.34 -0.34
104 AT3G05390 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: mitochondrion;
EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7
growth stages; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF248, methyltransferase putative
(InterPro:IPR004159); BEST Arabidopsis thaliana protein
match is: S-adenosyl-L-methionine-dependent
methyltransferases superfamily protein (TAIR:AT4G01240.1);
Has 507 Blast hits to 498 proteins in 33 species: Archae -
4; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 493;
Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).		 -0.6 0.32 -0.31
105 AT5G47560 tonoplast dicarboxylate transporter ATSDAT, TONOPLAST DICARBOXYLATE
TRANSPORTER, tonoplast
dicarboxylate transporter		 -0.6 0.31 -0.31
106 AT5G42570 B-cell receptor-associated 31-like 0.6 0.31 -0.3
107 AT5G54130 Calcium-binding endonuclease/exonuclease/phosphatase family -0.6 0.3 -0.32
108 AT2G07360 SH3 domain-containing protein -0.6 0.3 -0.3
109 AT5G37610 Eukaryotic porin family protein -0.6 0.3 -0.32
110 AT4G38960 B-box type zinc finger family protein 0.6 0.33 -0.31
111 AT3G16730 CONTAINS InterPro DOMAIN/s: Non-SMC condensin II complex,
subunit H2-like (InterPro:IPR009378); Has 249 Blast hits to
211 proteins in 82 species: Archae - 0; Bacteria - 0;
Metazoa - 145; Fungi - 8; Plants - 30; Viruses - 0; Other
Eukaryotes - 66 (source: NCBI BLink).		 hypersensitive to excess boron 2 0.6 0.33 -0.33
112 AT4G38590 beta-galactosidase 14 beta-galactosidase 14 -0.59 0.28 -0.31
113 AT2G34490 cytochrome P450, family 710, subfamily A, polypeptide 2 cytochrome P450, family 710,
subfamily A, polypeptide 2		 -0.59 0.31 -0.29
114 AT5G54950 Aconitase family protein -0.59 0.34 -0.31
115 AT5G45370 nodulin MtN21 /EamA-like transporter family protein -0.59 0.31 -0.3
116 AT3G25840 Protein kinase superfamily protein -0.59 0.32 -0.3
117 AT3G24060 Plant self-incompatibility protein S1 family -0.59 0.31 -0.32
118 AT4G17710 homeodomain GLABROUS 4 homeodomain GLABROUS 4 -0.59 0.29 -0.32
119 AT4G32750 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.59 0.31 -0.3
120 AT2G46450 cyclic nucleotide-gated channel 12 cyclic nucleotide-gated channel
12, cyclic nucleotide-gated
channel 12		 -0.59 0.34 -0.31
121 AT5G04330 Cytochrome P450 superfamily protein -0.59 0.33 -0.3
122 AT5G04590 sulfite reductase sulfite reductase -0.59 0.31 -0.33
123 AT1G31820 Amino acid permease family protein -0.59 0.32 -0.34
124 AT3G15770 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G25360.2); Has 143 Blast hits
to 143 proteins in 25 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 136; Viruses - 0; Other
Eukaryotes - 7 (source: NCBI BLink).		 -0.58 0.32 -0.32
125 AT5G66970 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.58 0.31 -0.31
126 AT5G64905 elicitor peptide 3 precursor elicitor peptide 3 precursor -0.58 0.29 -0.32
127 AT4G13820 Leucine-rich repeat (LRR) family protein -0.58 0.31 -0.32
128 ATMG00070 NADH dehydrogenase subunit 9 NADH dehydrogenase subunit 9 -0.58 0.32 -0.31
129 AT1G43910 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.58 0.32 -0.34
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
130 C0136 Lactic acid D,L-Lactic acid Lactate pyruvate fermentation to lactate 0.77 0.46 -0.47 C0136
131 C0105 Glutathione disulfide - Glutathione disulfide sulfate reduction II (assimilatory),
selenate reduction,
glutathione redox reactions I,
ascorbate glutathione cycle,
glutathione redox reactions II 		-0.73 0.45 -0.46 C0105