AT1G79350 : embryo defective 1135
Query Information
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AGICode AT1G79350
Description RING/FYVE/PHD zinc finger superfamily protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT1G79350 RING/FYVE/PHD zinc finger superfamily protein embryo defective 1135 1 0.33 -0.31
2 AT1G49040 stomatal cytokinesis defective / SCD1 protein (SCD1) STOMATAL CYTOKINESIS-DEFECTIVE 1 0.75 0.3 -0.33
3 AT5G60170 RNA binding (RRM/RBD/RNP motifs) family protein 0.72 0.32 -0.31
4 AT4G17960 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G46620.1); Has 46 Blast hits
to 45 proteins in 13 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.7 0.33 -0.32
5 AT3G50590 Transducin/WD40 repeat-like superfamily protein 0.69 0.3 -0.31
6 AT1G55930 CBS domain-containing protein / transporter associated
domain-containing protein		 0.67 0.3 -0.31
7 AT1G32810 RING/FYVE/PHD zinc finger superfamily protein 0.67 0.32 -0.34
8 AT1G73960 TBP-associated factor 2 TBP-associated factor 2 0.67 0.32 -0.31
9 ATCG00540 photosynthetic electron transfer A photosynthetic electron transfer A 0.67 0.32 -0.32
10 AT1G77860 Rhomboid-related intramembrane serine protease family
protein		 KOMPEITO 0.66 0.35 -0.32
11 AT5G66130 RADIATION SENSITIVE 17 RADIATION SENSITIVE 17, RADIATION
SENSITIVE 17		 0.66 0.33 -0.29
12 AT4G29450 Leucine-rich repeat protein kinase family protein 0.66 0.31 -0.31
13 AT1G76880 Duplicated homeodomain-like superfamily protein 0.65 0.32 -0.32
14 AT1G75860 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G20100.1); Has 258 Blast hits
to 235 proteins in 58 species: Archae - 0; Bacteria - 4;
Metazoa - 59; Fungi - 16; Plants - 90; Viruses - 0; Other
Eukaryotes - 89 (source: NCBI BLink).		 0.65 0.31 -0.35
15 AT3G31920 transposable element gene 0.65 0.28 -0.32
16 AT3G51120 DNA binding;zinc ion binding;nucleic acid binding;nucleic
acid binding		 0.64 0.29 -0.34
17 AT3G04800 translocase inner membrane subunit 23-3 translocase inner membrane subunit
23-3, translocase inner membrane
subunit 23-3		 -0.64 0.3 -0.33
18 AT3G06480 DEAD box RNA helicase family protein 0.64 0.31 -0.29
19 AT5G01290 mRNA capping enzyme family protein 0.64 0.33 -0.32
20 AT5G16300 Vps51/Vps67 family (components of vesicular transport)
protein		 0.63 0.34 -0.3
21 AT4G38740 rotamase CYP 1 rotamase CYP 1 -0.63 0.32 -0.3
22 AT5G26760 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.63 0.32 -0.3
23 AT5G28590 DNA-binding family protein 0.63 0.31 -0.29
24 AT3G12100 Cation efflux family protein 0.63 0.32 -0.32
25 AT5G09340 Ubiquitin family protein -0.62 0.3 -0.32
26 AT1G50140 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.62 0.34 -0.32
27 AT2G11890 adenylate cyclases 0.62 0.32 -0.32
28 AT5G46210 cullin4 ATCUL4, cullin4 0.62 0.33 -0.32
29 AT1G26820 ribonuclease 3 ribonuclease 3 -0.61 0.32 -0.32
30 AT4G00760 pseudo-response regulator 8 pseudo-response regulator 8,
PSEUDO-RESPONSE REGULATOR 8		 0.61 0.34 -0.33
31 AT4G20400 JUMONJI 14 JUMONJI 14, PKDM7B 0.61 0.31 -0.3
32 AT1G08990 plant glycogenin-like starch initiation protein 5 plant glycogenin-like starch
initiation protein 5		 -0.61 0.31 -0.32
33 AT5G58450 Tetratricopeptide repeat (TPR)-like superfamily protein 0.61 0.31 -0.3
34 ATCG00180 DNA-directed RNA polymerase family protein RPOC1 0.6 0.32 -0.29
35 AT3G15490 Regulator of Vps4 activity in the MVB pathway protein 0.6 0.32 -0.33
36 AT4G35350 xylem cysteine peptidase 1 xylem cysteine peptidase 1 -0.6 0.31 -0.32
37 AT5G01400 HEAT repeat-containing protein ENHANCED SILENCING PHENOTYPE 4 0.6 0.32 -0.32
38 AT4G04650 RNA-directed DNA polymerase (reverse transcriptase)-related
family protein		 0.6 0.3 -0.31
39 AT1G43580 Sphingomyelin synthetase family protein -0.6 0.3 -0.31
40 AT5G58100 unknown protein; INVOLVED IN: pollen exine formation;
EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8
growth stages; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT3G28720.1); Has 35333 Blast hits to
34131 proteins in 2444 species: Archae - 798; Bacteria -
22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses -
0; Other Eukaryotes - 9610 (source: NCBI BLink).		 0.59 0.32 -0.34
41 AT5G24390 Ypt/Rab-GAP domain of gyp1p superfamily protein -0.59 0.31 -0.31
42 AT5G42170 SGNH hydrolase-type esterase superfamily protein 0.59 0.3 -0.31
43 AT3G54130 Josephin family protein -0.59 0.31 -0.3
44 AT4G02460 DNA mismatch repair protein, putative POSTMEIOTIC SEGREGATION 1 0.59 0.31 -0.33
45 AT3G28430 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion; EXPRESSED IN: 17 plant structures; EXPRESSED
DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function FPL (InterPro:IPR019155); Has
243 Blast hits to 233 proteins in 101 species: Archae - 0;
Bacteria - 0; Metazoa - 110; Fungi - 0; Plants - 53;
Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).		 0.59 0.31 -0.3
46 AT5G63320 nuclear protein X1 nuclear protein X1 0.59 0.32 -0.31
47 AT2G29050 RHOMBOID-like 1 RHOMBOID-like 1, RHOMBOID-like 1 -0.59 0.32 -0.32
48 AT1G54840 HSP20-like chaperones superfamily protein -0.58 0.31 -0.31
49 AT3G17300 unknown protein; Has 48 Blast hits to 48 proteins in 21
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 40; Viruses - 0; Other Eukaryotes - 8 (source:
NCBI BLink).		 At3g17300 -0.58 0.29 -0.33
50 AT5G46100 Pentatricopeptide repeat (PPR) superfamily protein 0.58 0.32 -0.31
51 AT3G13225 WW domain-containing protein 0.58 0.29 -0.32
52 AT2G23210 UDP-Glycosyltransferase superfamily protein 0.58 0.31 -0.29
53 AT4G23310 cysteine-rich RLK (RECEPTOR-like protein kinase) 23 cysteine-rich RLK (RECEPTOR-like
protein kinase) 23		 -0.58 0.31 -0.31
54 AT1G61940 tubby like protein 4 tubby like protein 4, tubby like
protein 4		 0.58 0.3 -0.31
55 AT4G07425 transposable element gene 0.58 0.3 -0.31
56 AT1G63490 transcription factor jumonji (jmjC) domain-containing
protein		 0.57 0.3 -0.34
57 AT4G07370 transposable element gene 0.57 0.34 -0.31
58 AT3G24490 Alcohol dehydrogenase transcription factor Myb/SANT-like
family protein		 0.57 0.32 -0.31
59 AT3G08730 protein-serine kinase 1 ARABIDOPSIS THALIANA
PROTEIN-SERINE KINASE 1,
ARABIDOPSIS THALIANA
PROTEIN-SERINE KINASE 6, ATS6K1,
protein-serine kinase 1,
ROTEIN-SERINE KINASE 6, P70
RIBOSOMAL S6 KINASE		 0.57 0.34 -0.33
60 AT2G01770 vacuolar iron transporter 1 ATVIT1, vacuolar iron transporter
1		 0.57 0.33 -0.32
61 AT2G29150 NAD(P)-binding Rossmann-fold superfamily protein 0.57 0.3 -0.32
62 AT5G35600 histone deacetylase7 histone deacetylase7 0.56 0.31 -0.29
63 AT3G19670 pre-mRNA-processing protein 40B pre-mRNA-processing protein 40B,
pre-mRNA-processing protein 40B		 0.56 0.31 -0.3
64 AT4G27040 EAP30/Vps36 family protein VPS22 0.56 0.33 -0.32
65 AT2G31035 BEST Arabidopsis thaliana protein match is: OSBP(oxysterol
binding protein)-related protein 1B (TAIR:AT2G31030.1); Has
7 Blast hits to 7 proteins in 2 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses -
0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.56 0.31 -0.31
66 AT4G24540 AGAMOUS-like 24 AGAMOUS-like 24 0.56 0.33 -0.3
67 AT5G56620 NAC domain containing protein 99 NAC domain containing protein 99,
NAC domain containing protein 99		 -0.56 0.32 -0.3
68 AT3G60070 Major facilitator superfamily protein 0.56 0.31 -0.31
69 AT5G20170 RNA polymerase II transcription mediators 0.56 0.31 -0.3
70 ATCG01020 ribosomal protein L32 ribosomal protein L32 0.55 0.32 -0.31
71 AT4G21323 Subtilase family protein 0.55 0.33 -0.32
72 AT2G14170 aldehyde dehydrogenase 6B2 aldehyde dehydrogenase 6B2 -0.55 0.29 -0.29
73 AT3G21410 F-box and associated interaction domains-containing protein 0.55 0.33 -0.31
74 AT1G49930 BEST Arabidopsis thaliana protein match is: Alanyl-tRNA
synthetase, class IIc (TAIR:AT5G22800.1); Has 21 Blast hits
to 21 proteins in 10 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.55 0.32 -0.33
75 AT5G47635 Pollen Ole e 1 allergen and extensin family protein -0.55 0.29 -0.33
76 AT2G35540 DNAJ heat shock N-terminal domain-containing protein 0.55 0.31 -0.3
77 AT2G23540 GDSL-like Lipase/Acylhydrolase superfamily protein -0.54 0.31 -0.3
78 AT3G07930 DNA glycosylase superfamily protein -0.54 0.34 -0.31
79 AT1G75600 Histone superfamily protein -0.54 0.3 -0.33
80 AT5G40020 Pathogenesis-related thaumatin superfamily protein -0.53 0.3 -0.31
81 AT5G54700 Ankyrin repeat family protein -0.53 0.33 -0.34
82 AT1G54420 unknown protein; Has 9 Blast hits to 7 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 3; Viruses - 0; Other Eukaryotes - 6 (source: NCBI
BLink).		 -0.52 0.32 -0.31
83 AT3G28610 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 -0.52 0.31 -0.33
84 AT3G10880 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G05180.1); Has 15699 Blast
hits to 11378 proteins in 1134 species: Archae - 391;
Bacteria - 2054; Metazoa - 6851; Fungi - 1354; Plants -
1096; Viruses - 119; Other Eukaryotes - 3834 (source: NCBI
BLink).		 -0.52 0.31 -0.3
85 AT3G57100 Protein of unknown function (DUF677) -0.51 0.31 -0.31
86 AT5G58820 Subtilisin-like serine endopeptidase family protein -0.5 0.33 -0.32
87 AT5G59760 Protein of unknown function (DUF1635) -0.5 0.33 -0.33
88 AT1G26320 Zinc-binding dehydrogenase family protein -0.5 0.29 -0.32
89 AT4G17990 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G17700.1); Has 134 Blast hits
to 131 proteins in 2 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 134; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.5 0.33 -0.3
90 AT5G19200 NAD(P)-binding Rossmann-fold superfamily protein TSC10B -0.5 0.31 -0.32
91 AT3G11930 Adenine nucleotide alpha hydrolases-like superfamily
protein		 -0.5 0.33 -0.29
92 AT3G30350 Encodes a root meristem growth factor (RGF). Belongs to a
family of functionally redundant homologous peptides that
are secreted, tyrosine-sulfated, and expressed mainly in
the stem cell area and the innermost layer of central
columella cells. RGFs are required for maintenance of the
root stem cell niche and transit amplifying cell
proliferation. Members of this family include: At5g60810
(RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350
(RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240
(RGF7), At2g03830 (RGF8) and At5g64770 (RGF9).		 root meristem growth factor 4 -0.5 0.3 -0.34
93 AT3G01240 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 11 plant structures;
EXPRESSED DURING: L mature pollen stage, M germinated
pollen stage, 4 anthesis, C globular stage, petal
differentiation and expansion stage; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT3G01230.1); Has 12 Blast hits to 12 proteins in 3
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 11; Viruses - 0; Other Eukaryotes - 1 (source:
NCBI BLink).		 -0.49 0.34 -0.33
94 AT3G62320 Polynucleotidyl transferase, ribonuclease H-like
superfamily protein		 -0.49 0.32 -0.31
95 AT2G36020 HVA22-like protein J HVA22-like protein J -0.49 0.3 -0.29
96 AT4G29600 Cytidine/deoxycytidylate deaminase family protein -0.49 0.32 -0.3
97 AT5G03360 DC1 domain-containing protein -0.48 0.33 -0.29
98 AT2G32890 RALF-like 17 RALF-like 17 -0.48 0.32 -0.31
99 AT5G03980 SGNH hydrolase-type esterase superfamily protein -0.48 0.33 -0.32
100 AT1G56520 Disease resistance protein (TIR-NBS-LRR class) family -0.48 0.3 -0.32
101 AT4G36510 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; Has 2 Blast hits to 2 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.48 0.32 -0.3
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
102 C0136 Lactic acid D,L-Lactic acid Lactate pyruvate fermentation to lactate -0.7 0.44 -0.48 C0136
103 C0177 MST_2429.6 - - - 0.67 0.46 -0.44
104 C0193 Pantothenic acid D,L-Pantothenic acid Pantothenate pantothenate biosynthesis 0.66 0.45 -0.46 C0193
105 C0184 MST_3110.4 - - - 0.64 0.46 -0.43
106 C0065 Cellobiose D-(+)-Cellobiose Cellobiose xyloglucan biosynthesis,
starch degradation I 		0.56 0.33 -0.31 C0065
107 C0022 1,4-Butanediamine - Putrescine spermine and spermidine degradation III,
putrescine degradation IV,
superpathway of polyamine biosynthesis,
putrescine biosynthesis II,
spermidine biosynthesis I,
putrescine biosynthesis I 		-0.54 0.32 -0.35 C0022