AT1G43170 : ribosomal protein 1

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AGICode	AT1G43170
Description	ribosomal protein 1

Gene information

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	Gene Code	Description / Information	Gene name	Correlation				link
	Gene Code	Description / Information	Gene name	pcc	2.5%	97.5%	PPI	link
1	AT1G43170	ribosomal protein 1	ribosomal protein 1, embryo defective 2207, ribosomal protein 1, RPL3A	1	0.32	-0.31
2	AT1G64190	6-phosphogluconate dehydrogenase family protein		0.89	0.3	-0.32
3	AT5G17870	plastid-specific 50S ribosomal protein 6	plastid-specific 50S ribosomal protein 6	0.89	0.32	-0.32
4	AT5G05890	UDP-Glycosyltransferase superfamily protein		0.86	0.32	-0.32
5	AT5G27990	Pre-rRNA-processing protein TSR2, conserved region		0.84	0.33	-0.3
6	AT4G13050	Acyl-ACP thioesterase		0.84	0.31	-0.3
7	AT3G55170	Ribosomal L29 family protein		0.83	0.32	-0.3
8	AT3G53710	ARF-GAP domain 6	ARF-GAP domain 6	0.8	0.29	-0.34
9	AT5G35730	EXS (ERD1/XPR1/SYG1) family protein		0.8	0.33	-0.32
10	AT1G62830	LSD1-like 1	ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, ATSWP1, LSD1-like 1, LYSINE-SPECIFIC HISTONE DEMETHYLASE, SWP1	0.8	0.3	-0.32
11	AT5G17890	DA1-related protein 4	CHILLING SENSITIVE 3, DA1-related protein 4	0.79	0.33	-0.33
12	AT1G47250	20S proteasome alpha subunit F2	20S proteasome alpha subunit F2	0.79	0.33	-0.3
13	AT1G68370	Chaperone DnaJ-domain superfamily protein	ALTERED RESPONSE TO GRAVITY 1	0.79	0.33	-0.33
14	AT1G63880	Disease resistance protein (TIR-NBS-LRR class) family		0.78	0.33	-0.3
15	AT5G03345	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Magnesium transporter (InterPro:IPR018937); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).		0.78	0.32	-0.31
16	AT1G65290	mitochondrial acyl carrier protein 2	mitochondrial acyl carrier protein 2	0.78	0.33	-0.28
17	AT5G28500	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G04550.1); Has 109 Blast hits to 109 proteins in 49 species: Archae - 0; Bacteria - 67; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).		0.78	0.31	-0.31
18	AT5G15980	Pentatricopeptide repeat (PPR) superfamily protein		0.78	0.33	-0.32
19	AT5G06660	Protein of unknown function DUF106, transmembrane		0.78	0.32	-0.32
20	AT5G40830	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein		0.76	0.32	-0.32
21	AT1G62640	3-ketoacyl-acyl carrier protein synthase III	3-ketoacyl-acyl carrier protein synthase III	0.76	0.31	-0.34
22	AT1G62150	Mitochondrial transcription termination factor family protein		0.76	0.34	-0.32
23	AT1G61730	DNA-binding storekeeper protein-related transcriptional regulator		0.76	0.31	-0.31
24	AT5G04320	Shugoshin C terminus		0.76	0.33	-0.32
25	AT5G39990	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein		0.75	0.32	-0.31
26	AT1G62330	O-fucosyltransferase family protein		0.75	0.3	-0.33
27	AT1G59900	pyruvate dehydrogenase complex E1 alpha subunit	pyruvate dehydrogenase complex E1 alpha subunit, pyruvate dehydrogenase complex E1 alpha subunit	0.74	0.33	-0.3
28	AT1G49950	telomere repeat binding factor 1	TELOMERE REPEAT BINDING FACTOR 1, telomere repeat binding factor 1	0.73	0.32	-0.32
29	AT5G02310	proteolysis 6	proteolysis 6	-0.73	0.3	-0.31
30	AT4G29720	polyamine oxidase 5	polyamine oxidase 5, polyamine oxidase 5	0.73	0.33	-0.32
31	AT5G28060	Ribosomal protein S24e family protein		0.73	0.3	-0.34
32	AT1G61870	pentatricopeptide repeat 336	pentatricopeptide repeat 336	0.73	0.31	-0.33
33	AT1G64490	DEK, chromatin associated protein		0.73	0.33	-0.32
34	AT4G22720	Actin-like ATPase superfamily protein		0.73	0.31	-0.3
35	AT4G11100	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G03060.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).		0.72	0.32	-0.33
36	AT5G42280	Cysteine/Histidine-rich C1 domain family protein		0.71	0.32	-0.3
37	AT1G74320	Protein kinase superfamily protein		0.71	0.33	-0.33
38	AT5G17790	zinc finger (Ran-binding) family protein	VARIEGATED 3	0.71	0.3	-0.3
39	AT5G05750	DNAJ heat shock N-terminal domain-containing protein		0.7	0.31	-0.3
40	AT5G38630	cytochrome B561-1	cytochrome B561-1, cytochrome B561-1	0.7	0.31	-0.31
41	AT1G66620	Protein with RING/U-box and TRAF-like domains		0.7	0.33	-0.33
42	AT5G17880	disease resistance protein (TIR-NBS-LRR class)	constitutive shade-avoidance1	0.7	0.31	-0.29
43	AT1G48840	Plant protein of unknown function (DUF639)		-0.7	0.3	-0.29
44	AT5G08565	Transcription initiation Spt4-like protein		0.7	0.32	-0.35
45	AT1G69790	Protein kinase superfamily protein		-0.69	0.32	-0.32
46	AT5G10240	asparagine synthetase 3	asparagine synthetase 3	0.69	0.31	-0.31
47	AT5G23230	nicotinamidase 2	nicotinamidase 2	0.69	0.34	-0.31
48	AT5G05170	Cellulose synthase family protein	ATCESA3, ATH-B, CELLULOSE SYNTHASE 3, CONSTITUTIVE EXPRESSION OF VSP 1, ISOXABEN RESISTANT 1	0.69	0.33	-0.3
49	AT5G40950	ribosomal protein large subunit 27	ribosomal protein large subunit 27	0.68	0.31	-0.3
50	AT5G20580	BEST Arabidopsis thaliana protein match is: FRIGIDA interacting protein 1 (TAIR:AT2G06005.1); Has 167 Blast hits to 167 proteins in 73 species: Archae - 0; Bacteria - 25; Metazoa - 58; Fungi - 25; Plants - 43; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).		0.68	0.32	-0.33
51	AT4G01790	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein		0.68	0.34	-0.29
52	AT4G07410	Transducin family protein / WD-40 repeat family protein	POPCORN	0.68	0.32	-0.33
53	AT3G07870	F-box and associated interaction domains-containing protein		-0.68	0.31	-0.29
54	AT5G37290	ARM repeat superfamily protein		0.68	0.32	-0.31
55	AT4G05450	mitochondrial ferredoxin 1	ARABIDOPSIS MITOCHONDRIAL FERREDOXIN 1, mitochondrial ferredoxin 1	0.68	0.32	-0.33
56	AT3G08020	PHD finger family protein		-0.68	0.3	-0.31
57	AT4G34030	3-methylcrotonyl-CoA carboxylase	3-methylcrotonyl-CoA carboxylase	-0.67	0.34	-0.32
58	AT1G68930	pentatricopeptide (PPR) repeat-containing protein		0.67	0.31	-0.31
59	AT4G05520	EPS15 homology domain 2	EPS15 homology domain 2, EPS15 homology domain 2	0.67	0.31	-0.31
60	AT5G36230	ARM repeat superfamily protein		0.67	0.31	-0.31
61	AT1G65390	phloem protein 2 A5	phloem protein 2 A5, phloem protein 2 A5	0.67	0.32	-0.33
62	AT4G12110	sterol-4alpha-methyl oxidase 1-1	ATSMO1-1, sterol-4alpha-methyl oxidase 1-1	0.67	0.31	-0.32
63	AT5G36910	thionin 2.2	thionin 2.2	0.67	0.31	-0.32
64	AT5G23710	DNA binding;DNA-directed RNA polymerases		0.67	0.34	-0.33
65	AT3G08890	Protein of unknown function, DUF538		0.67	0.32	-0.29
66	AT1G63170	Zinc finger, C3HC4 type (RING finger) family protein		0.67	0.33	-0.32
67	AT1G65370	TRAF-like family protein		0.67	0.34	-0.32
68	AT4G02450	HSP20-like chaperones superfamily protein		0.66	0.32	-0.32
69	AT1G52590	Putative thiol-disulphide oxidoreductase DCC		-0.66	0.29	-0.31
70	AT1G64270	transposable element gene		0.66	0.31	-0.29
71	AT4G27050	F-box/RNI-like superfamily protein		-0.66	0.32	-0.3
72	AT5G27110	Tetratricopeptide repeat (TPR)-like superfamily protein		0.66	0.33	-0.33
73	AT1G79070	SNARE-associated protein-related		0.66	0.32	-0.31
74	AT1G65280	DNAJ heat shock N-terminal domain-containing protein		0.66	0.32	-0.3
75	AT1G61790	Oligosaccharyltransferase complex/magnesium transporter family protein		0.65	0.29	-0.31
76	ATMG01200	hypothetical protein	ORF294	-0.65	0.32	-0.31
77	AT1G59830	protein phosphatase 2A-2	protein phosphatase 2A-2	0.65	0.3	-0.31
78	AT3G53260	phenylalanine ammonia-lyase 2	ATPAL2, phenylalanine ammonia-lyase 2	0.65	0.33	-0.31
79	ATMG01360	cytochrome oxidase	cytochrome oxidase	-0.65	0.31	-0.29
80	AT4G25100	Fe superoxide dismutase 1	ARABIDOPSIS FE SUPEROXIDE DISMUTASE 1, Fe superoxide dismutase 1	0.65	0.34	-0.32
81	AT4G08280	Thioredoxin superfamily protein		0.64	0.28	-0.29
82	AT1G65870	Disease resistance-responsive (dirigent-like protein) family protein		0.64	0.32	-0.31
83	AT1G57770	FAD/NAD(P)-binding oxidoreductase family protein		0.64	0.31	-0.31
84	AT1G58150	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: in 9 processes; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 1 Blast hits to 1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).		0.64	0.31	-0.31
85	AT5G49840	ATP-dependent Clp protease		-0.64	0.31	-0.32
86	AT4G09680	conserved telomere maintenance component 1	ATCTC1, conserved telomere maintenance component 1	0.64	0.31	-0.32
87	AT5G24760	GroES-like zinc-binding dehydrogenase family protein		-0.63	0.31	-0.32
88	AT4G28040	nodulin MtN21 /EamA-like transporter family protein		-0.63	0.3	-0.31
89	AT4G19240	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G43280.1); Has 19 Blast hits to 17 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).		-0.61	0.31	-0.32
90	AT1G54040	epithiospecifier protein	epithiospecifier protein, EPITHIOSPECIFYING SENESCENCE REGULATOR, TASTY	-0.61	0.34	-0.32
91	ATMG00160	cytochrome oxidase 2	cytochrome oxidase 2	-0.61	0.31	-0.32
92	AT1G63540	hydroxyproline-rich glycoprotein family protein		-0.6	0.29	-0.32
93	AT1G48310	chromatin remodeling factor18	CHA18, chromatin remodeling factor18	-0.59	0.33	-0.32
94	AT5G20620	ubiquitin 4	ubiquitin 4	-0.58	0.31	-0.33
95	AT5G23570	XS domain-containing protein / XS zinc finger domain-containing protein-related	SUPPRESSOR OF GENE SILENCING 3, SUPPRESSOR OF GENE SILENCING 3	-0.58	0.3	-0.32
96	AT4G08960	phosphotyrosyl phosphatase activator (PTPA) family protein		-0.57	0.32	-0.29
97	AT4G22280	F-box/RNI-like superfamily protein		-0.57	0.3	-0.3
98	ATMG00650	NADH dehydrogenase subunit 4L	NADH dehydrogenase subunit 4L	-0.57	0.3	-0.29
99	ATMG00060	NADH dehydrogenase subunit 5C	NADH DEHYDROGENASE SUBUNIT 5, NADH DEHYDROGENASE SUBUNIT 5.3, NADH dehydrogenase subunit 5C	-0.56	0.32	-0.32
100	AT5G15360	unknown protein; Has 4 Blast hits to 4 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).		-0.55	0.31	-0.32
101	AT1G68670	myb-like transcription factor family protein		-0.54	0.32	-0.32
102	AT5G25270	Ubiquitin-like superfamily protein		-0.54	0.3	-0.32
103	AT5G28030	L-cysteine desulfhydrase 1	L-cysteine desulfhydrase 1	-0.54	0.3	-0.31
104	AT4G03050	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein	AOP3	-0.53	0.32	-0.33
105	AT1G50290	unknown protein; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).		-0.53	0.31	-0.3

Metabolite information

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	CID	Metabolite name			Pathway Information	Correlation				link
	CID	Compound name	Stereochemistry	Aracyc name	Pathway Information	pcc	2.5%	97.5%	PPI	link
106	C0033	4-(Methylsulfinyl)butylglucosinolate	-	4-Methylsulfinylbutyl glucosinolate	glucosinolate biosynthesis from dihomomethionine	0.89	0.43	-0.42
107	C0038	5-(Methylthio)pentylglucosinolate	-	5-Methylthiopentylglucosinolate	glucosinolate biosynthesis from trihomomethionine	0.87	0.47	-0.5
108	C0034	4-Methylthio-n-butylglucosinolate	-	4-Methylthiobutyl glucosinolate	glucosinolate biosynthesis from dihomomethionine	0.85	0.32	-0.31
109	C0183	MST_3033.1	-	-	-	0.79	0.45	-0.45
110	C0244	Sucrose	D-Sucrose	Sucrose	stachyose biosynthesis, fructan degradation, stachyose degradation, galactose degradation III, superpathway of sucrose and starch metabolism II (photosynthetic tissue), sucrose degradation III, UDP-glucose biosynthesis (from sucrose), ajugose biosynthesis II (galactinol-independent), sucrose biosynthesis I	0.7	0.31	-0.32
111	C0178	MST_2446.7	-	-	-	-0.66	0.46	-0.47

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