AT2G17660 : -
Query Information
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AGICode AT2G17660
Description RPM1-interacting protein 4 (RIN4) family protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT2G17660 RPM1-interacting protein 4 (RIN4) family protein 1 0.31 -0.31
2 AT2G13230 transposable element gene 0.73 0.33 -0.32
3 AT3G13170 Spo11/DNA topoisomerase VI, subunit A protein ATSPO11-1 -0.72 0.32 -0.32
4 AT3G20620 F-box family protein-related -0.71 0.29 -0.29
5 AT1G61750 Receptor-like protein kinase-related family protein 0.71 0.32 -0.32
6 AT1G27820 Polynucleotidyl transferase, ribonuclease H-like
superfamily protein		 0.71 0.3 -0.3
7 AT4G29580 Cytidine/deoxycytidylate deaminase family protein -0.7 0.32 -0.32
8 AT3G19880 F-box and associated interaction domains-containing protein -0.69 0.35 -0.32
9 AT2G24370 Protein kinase protein with adenine nucleotide alpha
hydrolases-like domain		 -0.69 0.31 -0.33
10 AT4G13020 Protein kinase superfamily protein MHK -0.69 0.32 -0.31
11 AT3G15890 Protein kinase superfamily protein 0.68 0.33 -0.33
12 AT5G48270 Plant protein of unknown function (DUF868) -0.68 0.31 -0.34
13 AT4G10220 Protein of Unknown Function (DUF239) -0.68 0.3 -0.3
14 AT4G20290 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.67 0.31 -0.31
15 AT4G39420 unknown protein; Has 46 Blast hits to 40 proteins in 10
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 44; Viruses - 0; Other Eukaryotes - 2 (source:
NCBI BLink).		 -0.67 0.31 -0.33
16 AT1G09950 RESPONSE TO ABA AND SALT 1 RESPONSE TO ABA AND SALT 1 0.67 0.3 -0.32
17 AT2G20790 clathrin adaptor complexes medium subunit family protein -0.67 0.31 -0.32
18 AT1G42480 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF3456
(InterPro:IPR021852); Has 177 Blast hits to 177 proteins in
59 species: Archae - 0; Bacteria - 0; Metazoa - 140; Fungi
- 0; Plants - 35; Viruses - 0; Other Eukaryotes - 2
(source: NCBI BLink).		 -0.67 0.33 -0.3
19 AT2G35590 pseudogene, serpin (serine protease inhibitor), putative,
similar to protein zx (Hordeum vulgare subsp. vulgare)
GI:19071, serpin (Triticum aestivum) GI:1885346; contains
Pfam profile PF00079: Serpin (serine protease inhibitor);
this is very likely a pseudogene.; blastp match of 52%
identity and 2.2e-73 P-value to
GP|26224736|gb|AAN76362.1||AY158152 serpin-like protein
{Citrus x paradisi}		 0.67 0.32 -0.32
20 AT3G29690 HXXXD-type acyl-transferase family protein 0.67 0.33 -0.32
21 AT4G22430 F-box family protein 0.66 0.32 -0.32
22 AT1G58250 Golgi-body localisation protein domain ;RNA pol II promoter
Fmp27 protein domain		 SABRE -0.66 0.3 -0.31
23 AT3G04420 NAC domain containing protein 48 NAC domain containing protein 48,
NAC domain containing protein 48		 -0.66 0.33 -0.33
24 AT1G45160 Protein kinase superfamily protein -0.66 0.32 -0.35
25 AT2G43250 unknown protein; Has 32 Blast hits to 32 proteins in 11
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 -0.66 0.33 -0.31
26 AT5G18940 Mo25 family protein -0.65 0.32 -0.34
27 AT3G27700 zinc finger (CCCH-type) family protein / RNA recognition
motif (RRM)-containing protein		 -0.65 0.29 -0.3
28 AT4G04480 unknown protein; LOCATED IN: chloroplast; EXPRESSED IN:
flower, pollen tube; EXPRESSED DURING: petal
differentiation and expansion stage; BEST Arabidopsis
thaliana protein match is: F-box family protein with a
domain of unknown function (DUF295) (TAIR:AT4G22030.1); Has
78 Blast hits to 78 proteins in 10 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 -0.65 0.32 -0.32
29 AT3G05090 Transducin/WD40 repeat-like superfamily protein LATERAL ROOT STIMULATOR 1 -0.65 0.31 -0.32
30 ATMG00820 Reverse transcriptase (RNA-dependent DNA polymerase) ORF170 -0.65 0.33 -0.31
31 AT5G02410 DIE2/ALG10 family homolog of yeast ALG10 -0.64 0.32 -0.32
32 AT5G12450 FBD-like domain family protein -0.64 0.34 -0.3
33 AT3G06230 MAP kinase kinase 8 MAP kinase kinase 8, MAP kinase
kinase 8		 -0.64 0.31 -0.33
34 AT1G09230 RNA-binding (RRM/RBD/RNP motifs) family protein -0.64 0.32 -0.32
35 AT3G22700 F-box and associated interaction domains-containing protein 0.64 0.3 -0.32
36 AT4G17710 homeodomain GLABROUS 4 homeodomain GLABROUS 4 -0.64 0.32 -0.29
37 AT5G19480 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G12230.1); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 0.64 0.34 -0.29
38 AT3G42850 Mevalonate/galactokinase family protein -0.63 0.32 -0.31
39 AT4G04590 transposable element gene -0.63 0.31 -0.31
40 AT4G14820 Pentatricopeptide repeat (PPR) superfamily protein -0.63 0.3 -0.32
41 AT2G44990 carotenoid cleavage dioxygenase 7 ATCCD7, carotenoid cleavage
dioxygenase 7, MAX3		 -0.63 0.33 -0.34
42 AT1G16010 magnesium transporter 2 AtMGT2, AtMRS2-1, magnesium
transporter 2, MRS2-1		 -0.63 0.32 -0.32
43 AT5G28590 DNA-binding family protein -0.63 0.35 -0.33
44 AT3G04810 NIMA-related kinase 2 NIMA-related kinase 2,
NIMA-related kinase 2		 -0.63 0.32 -0.29
45 AT3G59100 glucan synthase-like 11 glucan synthase-like 11, gsl11,
glucan synthase-like 11		 -0.63 0.33 -0.32
46 AT4G04420 transposable element gene -0.63 0.32 -0.31
47 AT1G68630 PLAC8 family protein -0.63 0.31 -0.31
48 AT1G05990 EF hand calcium-binding protein family ROOT HAIR SPECIFIC 1 0.62 0.31 -0.31
49 AT5G43710 Glycosyl hydrolase family 47 protein -0.62 0.32 -0.3
50 AT1G63030 Integrase-type DNA-binding superfamily protein DWARF AND DELAYED FLOWERING 2 0.62 0.31 -0.32
51 AT5G26920 Cam-binding protein 60-like G Cam-binding protein 60-like G 0.62 0.29 -0.33
52 AT1G11260 sugar transporter 1 SUGAR TRANSPORTER 1, sugar
transporter 1		 0.62 0.31 -0.3
53 AT3G12840 unknown protein; Has 0 Blast hits to 0 proteins in 0
species (source: NCBI BLink).		 -0.62 0.32 -0.3
54 AT3G16730 CONTAINS InterPro DOMAIN/s: Non-SMC condensin II complex,
subunit H2-like (InterPro:IPR009378); Has 249 Blast hits to
211 proteins in 82 species: Archae - 0; Bacteria - 0;
Metazoa - 145; Fungi - 8; Plants - 30; Viruses - 0; Other
Eukaryotes - 66 (source: NCBI BLink).		 hypersensitive to excess boron 2 0.62 0.31 -0.31
55 AT2G36700 Pectin lyase-like superfamily protein -0.61 0.31 -0.31
56 AT4G38000 DNA binding with one finger 4.7 DNA binding with one finger 4.7 -0.61 0.27 -0.31
57 AT3G54510 Early-responsive to dehydration stress protein (ERD4) -0.61 0.31 -0.33
58 AT1G42460 transposable element gene -0.61 0.29 -0.29
59 AT1G03170 Protein of unknown function (DUF3049) FANTASTIC FOUR 2 -0.61 0.29 -0.31
60 AT4G11950 Protein of unknown function (DUF1191) -0.61 0.29 -0.32
61 AT1G72990 beta-galactosidase 17 beta-galactosidase 17 -0.61 0.31 -0.31
62 AT4G04970 glucan synthase-like 1 GLUCAN SYNTHASE LIKE 1, GLUCAN
SYNTHASE LIKE-1, GSL01, glucan
synthase-like 1		 -0.61 0.29 -0.33
63 AT3G51360 Eukaryotic aspartyl protease family protein -0.61 0.33 -0.3
64 AT5G18910 Protein kinase superfamily protein -0.61 0.29 -0.34
65 AT1G36150 Bifunctional inhibitor/lipid-transfer protein/seed storage
2S albumin superfamily protein		 -0.61 0.31 -0.31
66 AT4G25610 C2H2-like zinc finger protein 0.61 0.33 -0.3
67 AT2G38830 Ubiquitin-conjugating enzyme/RWD-like protein 0.61 0.3 -0.33
68 AT4G19000 Transcription elongation factor (TFIIS) family protein ARABIDOPSIS THALIANA IWS2 (FROM
YEAST INTERACTS WITH SPT6), IWS2		 -0.61 0.3 -0.32
69 AT1G55450 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 0.6 0.31 -0.31
70 AT4G10950 SGNH hydrolase-type esterase superfamily protein -0.6 0.31 -0.32
71 AT3G42350 transposable element gene -0.6 0.32 -0.31
72 AT3G42100 transposable element gene -0.6 0.34 -0.31
73 AT3G05460 sporozoite surface protein-related 0.6 0.29 -0.3
74 AT3G42290 transposable element gene 0.6 0.32 -0.3
75 AT1G43900 Protein phosphatase 2C family protein -0.6 0.3 -0.31
76 AT5G49310 importin alpha isoform 5 importin alpha isoform 5 0.6 0.35 -0.32
77 AT1G12610 Integrase-type DNA-binding superfamily protein DWARF AND DELAYED FLOWERING 1 0.6 0.3 -0.33
78 AT5G47280 ADR1-like 3 ADR1-like 3 -0.6 0.34 -0.31
79 AT1G05790 lipase class 3 family protein -0.6 0.31 -0.32
80 AT3G46960 RNA helicase, ATP-dependent, SK12/DOB1 protein -0.6 0.31 -0.32
81 AT1G71697 choline kinase 1 choline kinase 1, CHOLINE KINASE,
choline kinase 1		 0.6 0.3 -0.32
82 ATCG00630 PSAJ PSAJ -0.59 0.32 -0.29
83 AT2G37320 Tetratricopeptide repeat (TPR)-like superfamily protein 0.59 0.32 -0.31
84 AT5G65950 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: cellular_component
unknown; EXPRESSED IN: 25 plant structures; EXPRESSED
DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF1683, C-terminal
(InterPro:IPR012880), Foie gras liver health family 1
(InterPro:IPR021773); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 -0.59 0.3 -0.32
85 AT3G45440 Concanavalin A-like lectin protein kinase family protein -0.59 0.32 -0.32
86 AT3G42700 transposable element gene -0.59 0.32 -0.33
87 AT1G60350 NAC domain containing protein 24 NAC domain containing protein 24,
NAC domain containing protein 24		 0.59 0.32 -0.31
88 AT5G15800 K-box region and MADS-box transcription factor family
protein 		AGAMOUS-like 2, SEPALLATA1 -0.59 0.32 -0.31
89 AT3G62330 Zinc knuckle (CCHC-type) family protein -0.59 0.34 -0.32
90 AT4G13780 methionine--tRNA ligase, putative / methionyl-tRNA
synthetase, putative / MetRS, putative		 -0.59 0.31 -0.31
91 AT3G24650 AP2/B3-like transcriptional factor family protein ABA INSENSITIVE 3, ABSCISIC ACID
INSENSITIVE 3, SUGAR INSENSITIVE
10		 -0.59 0.33 -0.3
92 AT1G68720 tRNA arginine adenosine deaminase ARABIDOPSIS THALIANA TRNA
ADENOSINE DEAMINASE A, tRNA
arginine adenosine deaminase		 -0.59 0.31 -0.31
93 AT1G68750 phosphoenolpyruvate carboxylase 4 phosphoenolpyruvate carboxylase 4,
phosphoenolpyruvate carboxylase 4		 -0.59 0.3 -0.3
94 AT2G48160 Tudor/PWWP/MBT domain-containing protein -0.59 0.31 -0.28
95 AT2G05900 SET domain protein 11 SET domain protein 11, SU(VAR)3-9
HOMOLOG 10		 -0.59 0.33 -0.31
96 AT1G02540 unknown protein; Has 3327 Blast hits to 2216 proteins in
265 species: Archae - 18; Bacteria - 202; Metazoa - 802;
Fungi - 283; Plants - 84; Viruses - 187; Other Eukaryotes -
1751 (source: NCBI BLink).		 -0.59 0.33 -0.32
97 AT5G52020 Integrase-type DNA-binding superfamily protein 0.59 0.3 -0.3
98 AT2G41690 heat shock transcription factor B3 heat shock transcription factor
B3, HEAT SHOCK TRANSCRIPTION
FACTOR B3, heat shock
transcription factor B3		 -0.59 0.32 -0.3
99 AT3G18480 CCAAT-displacement protein alternatively spliced product CCAAT-displacement protein
alternatively spliced product,
CCAAT-displacement protein
alternatively spliced product		 -0.59 0.32 -0.33
100 AT4G30440 UDP-D-glucuronate 4-epimerase 1 UDP-D-glucuronate 4-epimerase 1 0.59 0.31 -0.31
101 AT2G22530 Alkaline-phosphatase-like family protein -0.59 0.3 -0.32
102 AT1G50340 Plant invertase/pectin methylesterase inhibitor superfamily
protein		 -0.59 0.3 -0.33
103 AT1G35970 transposable element gene -0.58 0.3 -0.33
104 AT2G17950 Homeodomain-like superfamily protein PGA6, WUSCHEL, WUSCHEL 1 0.58 0.33 -0.32
105 AT2G32850 Protein kinase superfamily protein -0.58 0.32 -0.33
106 AT3G07400 lipase class 3 family protein -0.58 0.32 -0.31
107 AT3G05210 nucleotide repair protein, putative ERCC1, UV REPAIR DEFICIENT 7 -0.58 0.34 -0.31
108 AT2G18720 Translation elongation factor EF1A/initiation factor
IF2gamma family protein		 0.58 0.31 -0.31
109 AT2G13760 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G24380.1); Has 68 Blast hits
to 68 proteins in 20 species: Archae - 0; Bacteria - 0;
Metazoa - 2; Fungi - 4; Plants - 43; Viruses - 0; Other
Eukaryotes - 19 (source: NCBI BLink).		 0.58 0.31 -0.3
110 AT5G24970 Protein kinase superfamily protein -0.58 0.31 -0.31
111 AT4G04100 transposable element gene 0.58 0.3 -0.31
112 AT2G23800 geranylgeranyl pyrophosphate synthase 2 geranylgeranyl pyrophosphate
synthase 2, GERANYLGERANYL
PYROPHOSPHATE SYNTHASE 5		 0.58 0.32 -0.32
113 AT5G23190 cytochrome P450, family 86, subfamily B, polypeptide 1 cytochrome P450, family 86,
subfamily B, polypeptide 1		 0.58 0.32 -0.31
114 AT3G07900 O-fucosyltransferase family protein 0.57 0.32 -0.3
115 AT3G42070 transposable element gene -0.57 0.31 -0.31
116 AT4G34640 squalene synthase 1 ERG9, squalene synthase 1 -0.57 0.31 -0.3
117 AT3G52610 unknown protein; Has 68 Blast hits to 67 proteins in 21
species: Archae - 0; Bacteria - 11; Metazoa - 0; Fungi - 0;
Plants - 55; Viruses - 0; Other Eukaryotes - 2 (source:
NCBI BLink).		 -0.57 0.29 -0.31
118 AT3G22360 alternative oxidase 1B alternative oxidase 1B 0.57 0.31 -0.3
119 AT4G19440 Tetratricopeptide repeat (TPR)-like superfamily protein -0.57 0.3 -0.33
120 AT2G27300 NTM1-like 8 Arabidopsis NAC domain containing
protein 40, NTM1-like 8		 -0.57 0.3 -0.29
121 AT5G11940 Subtilase family protein 0.57 0.32 -0.33
122 AT4G00940 Dof-type zinc finger DNA-binding family protein 0.57 0.33 -0.33
123 AT4G12040 A20/AN1-like zinc finger family protein AtSAP7, stress-associated protein
7		 0.57 0.31 -0.33
124 AT5G56250 hapless 8 HAPLESS 8 -0.57 0.31 -0.32
125 AT1G55410 pseudogene, CHP-rich zinc finger protein, putative, similar
to putative CHP-rich zinc finger protein GB:CAB77744
GI:7268217 from (Arabidopsis thaliana)		 -0.57 0.32 -0.32
126 AT5G03280 NRAMP metal ion transporter family protein ATEIN2, CYTOKININ RESISTANT 1,
ETHYLENE INSENSITIVE 2, ENHANCED
RESPONSE TO ABA3, ORESARA 2,
ORESARA 3, PIR2		 -0.57 0.33 -0.33
127 AT5G25910 receptor like protein 52 receptor like protein 52, receptor
like protein 52		 0.57 0.33 -0.31
128 AT1G53345 unknown protein; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant
structures; EXPRESSED DURING: 4 anthesis, F mature embryo
stage, petal differentiation and expansion stage, E
expanded cotyledon stage, D bilateral stage; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT5G09580.1); Has 201 Blast hits to 201 proteins in
75 species: Archae - 6; Bacteria - 102; Metazoa - 2; Fungi
- 0; Plants - 47; Viruses - 7; Other Eukaryotes - 37
(source: NCBI BLink).		 0.56 0.31 -0.31
129 AT3G17620 F-box and associated interaction domains-containing protein 0.56 0.33 -0.3
130 AT3G09520 exocyst subunit exo70 family protein H4 exocyst subunit exo70 family
protein H4, exocyst subunit exo70
family protein H4		 0.56 0.33 -0.31
131 AT4G33390 Plant protein of unknown function (DUF827) 0.56 0.31 -0.31
132 AT5G37490 ARM repeat superfamily protein 0.56 0.33 -0.29
133 AT3G23680 F-box associated ubiquitination effector family protein 0.55 0.31 -0.32
134 AT2G01150 RING-H2 finger protein 2B RING-H2 finger protein 2B 0.55 0.33 -0.33
135 AT4G39410 WRKY DNA-binding protein 13 ARABIDOPSIS THALIANA WRKY
DNA-BINDING PROTEIN 13, WRKY
DNA-binding protein 13		 0.55 0.32 -0.32
136 AT1G68360 C2H2 and C2HC zinc fingers superfamily protein 0.55 0.32 -0.32
137 AT5G38610 Plant invertase/pectin methylesterase inhibitor superfamily
protein		 0.54 0.31 -0.34
138 AT1G23590 Domain of unknown function DUF220 0.54 0.31 -0.34
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
139 C0197 Phosphatidylcholine-36:1 - Phosphatidylcholine-36:1 choline biosynthesis III,
diacylglycerol biosynthesis,
phospholipases,
triacylglycerol biosynthesis,
linoleate biosynthesis I,
phosphatidylcholine biosynthesis III,
glutathione redox reactions I 		0.86 0.48 -0.48 C0197
140 C0081 Digalactosyldiacylglycerol-36:2 - Digalactosyldiacylglycerol-36:2 triacylglycerol degradation,
linoleate biosynthesis I,
glycolipid biosynthesis,
glutathione redox reactions I 		0.82 0.51 -0.48 C0081
141 C0083 Digalactosyldiacylglycerol-36:4 - Digalactosyldiacylglycerol-36:4 triacylglycerol degradation,
linoleate biosynthesis I,
glycolipid biosynthesis,
glutathione redox reactions I 		0.8 0.47 -0.53 C0083
142 C0110 Guanosine - Guanosine guanosine nucleotides degradation I,
guanine and guanosine salvage II,
guanosine nucleotides degradation II,
guanine and guanosine salvage III 		-0.8 0.43 -0.48 C0110
143 C0208 Phosphatidylinositol-34:2 - Phosphatidylinositol-34:2 3-phosphoinositide biosynthesis,
D-myo-inositol (1,4,5)-trisphosphate biosynthesis,
sphingolipid biosynthesis,
linoleate biosynthesis I,
cutin biosynthesis,
glycerophosphodiester degradation,
phosphate acquisition,
glutathione redox reactions I 		0.73 0.46 -0.5 C0208
144 C0151 Monogalactosyldiacylgycerol-34:4 - a Monogalactosyldiacylgycerol glycolipid biosynthesis,
triacylglycerol degradation,
linoleate biosynthesis I,
glutathione redox reactions I 		0.73 0.49 -0.46 C0151
145 C0084 Digalactosyldiacylglycerol-36:5 - Digalactosyldiacylglycerol-36:5 triacylglycerol degradation,
linoleate biosynthesis I,
glycolipid biosynthesis,
glutathione redox reactions I 		0.68 0.49 -0.51 C0084