AT1G09900 : -
Query Information
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AGICode AT1G09900
Description Pentatricopeptide repeat (PPR-like) superfamily protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT1G09900 Pentatricopeptide repeat (PPR-like) superfamily protein 1 0.31 -0.28
2 AT1G48460 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast envelope; EXPRESSED IN: 21 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G63040.1); Has 60 Blast hits to 60 proteins in 14
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.93 0.33 -0.32
3 AT2G14880 SWIB/MDM2 domain superfamily protein 0.93 0.33 -0.3
4 AT1G56050 GTP-binding protein-related 0.92 0.3 -0.32
5 AT4G25990 CCT motif family protein CIL 0.92 0.31 -0.3
6 AT3G06980 DEA(D/H)-box RNA helicase family protein 0.91 0.32 -0.33
7 AT5G46580 pentatricopeptide (PPR) repeat-containing protein 0.9 0.32 -0.34
8 AT4G29060 elongation factor Ts family protein embryo defective 2726 0.89 0.32 -0.33
9 AT1G55490 chaperonin 60 beta chaperonin 60 beta,
chaperonin-60beta1, LESION
INITIATION 1		 0.89 0.31 -0.31
10 AT3G53460 chloroplast RNA-binding protein 29 chloroplast RNA-binding protein 29 0.89 0.3 -0.33
11 AT4G26370 antitermination NusB domain-containing protein 0.89 0.3 -0.31
12 AT3G17170 Translation elongation factor EF1B/ribosomal protein S6
family protein		 REGULATOR OF FATTY-ACID
COMPOSITION 3		 0.89 0.33 -0.31
13 AT3G21300 RNA methyltransferase family protein 0.89 0.33 -0.33
14 AT3G57180 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 BRASSINAZOLE(BRZ) INSENSITIVE PALE
GREEN 2		 0.88 0.33 -0.32
15 AT3G59040 Tetratricopeptide repeat (TPR)-like superfamily protein 0.88 0.31 -0.31
16 AT4G02990 Mitochondrial transcription termination factor family
protein		 BELAYA SMERT, RUGOSA 2 0.88 0.3 -0.32
17 AT2G33430 differentiation and greening-like 1 DIFFERENTIATION AND GREENING-LIKE,
differentiation and greening-like
1		 0.88 0.32 -0.31
18 AT5G07900 Mitochondrial transcription termination factor family
protein		 0.88 0.33 -0.31
19 AT5G19620 outer envelope protein of 80 kDa ARABIDOPSIS THALIANA OUTER
ENVELOPE PROTEIN OF 80 KDA, EMBRYO
DEFECTIVE 213, outer envelope
protein of 80 kDa, translocon at
the outer envelope membrane of
chloroplasts 75-V		 0.88 0.32 -0.32
20 AT4G34290 SWIB/MDM2 domain superfamily protein 0.87 0.32 -0.3
21 AT3G03710 polyribonucleotide nucleotidyltransferase, putative PIGMENT DEFECTIVE 326,
POLYNUCLEOTIDE PHOSPHORYLASE,
resistant to inhibition with FSM
10		 0.87 0.31 -0.31
22 AT5G08610 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 PIGMENT DEFECTIVE 340 0.87 0.31 -0.31
23 AT2G39670 Radical SAM superfamily protein 0.87 0.32 -0.31
24 AT3G13470 TCP-1/cpn60 chaperonin family protein chaperonin-60beta2 0.87 0.32 -0.32
25 AT4G39960 Molecular chaperone Hsp40/DnaJ family protein 0.87 0.32 -0.32
26 AT1G70200 RNA-binding (RRM/RBD/RNP motifs) family protein 0.87 0.28 -0.31
27 AT4G37510 Ribonuclease III family protein 0.87 0.3 -0.32
28 AT5G63420 RNA-metabolising metallo-beta-lactamase family protein embryo defective 2746 0.86 0.32 -0.33
29 AT5G50280 Pentatricopeptide repeat (PPR) superfamily protein embryo defective 1006 0.86 0.33 -0.31
30 AT1G18090 5'-3' exonuclease family protein 0.86 0.33 -0.31
31 AT4G30720 FAD/NAD(P)-binding oxidoreductase family protein PIGMENT DEFECTIVE 327 0.86 0.31 -0.3
32 AT1G53800 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G53250.1); Has 1136 Blast hits
to 882 proteins in 242 species: Archae - 2; Bacteria - 216;
Metazoa - 257; Fungi - 77; Plants - 87; Viruses - 4; Other
Eukaryotes - 493 (source: NCBI BLink).		 0.86 0.32 -0.32
33 AT4G16390 pentatricopeptide (PPR) repeat-containing protein suppressor of variegation 7 0.86 0.33 -0.34
34 AT5G48830 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink).		 0.86 0.33 -0.3
35 AT4G31850 proton gradient regulation 3 proton gradient regulation 3 0.86 0.28 -0.32
36 AT2G41950 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast, plant-type cell wall; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 53
Blast hits to 53 proteins in 24 species: Archae - 0;
Bacteria - 27; Metazoa - 0; Fungi - 0; Plants - 26; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 0.85 0.31 -0.32
37 AT2G36990 RNApolymerase sigma-subunit F SIGMA FACTOR 6, SIGMA FACTOR 6,
RNApolymerase sigma-subunit F,
SOLDAT8		 0.85 0.34 -0.32
38 AT5G23310 Fe superoxide dismutase 3 Fe superoxide dismutase 3 0.85 0.3 -0.31
39 AT5G63050 embryo defective 2759 embryo defective 2759 0.85 0.31 -0.31
40 AT1G51570 Calcium-dependent lipid-binding (CaLB domain) plant
phosphoribosyltransferase family protein		 0.85 0.32 -0.34
41 AT5G39980 Tetratricopeptide repeat (TPR)-like superfamily protein 0.85 0.32 -0.33
42 AT1G73090 unknown protein; Has 28 Blast hits to 28 proteins in 12
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.84 0.3 -0.33
43 AT3G56680 Single-stranded nucleic acid binding R3H protein 0.84 0.32 -0.31
44 AT4G02510 translocon at the outer envelope membrane of chloroplasts
159		 ATTOC159, PLASTID PROTEIN IMPORT
2, translocon at the outer
envelope membrane of chloroplasts
159, TRANSLOCON AT THE OUTER
ENVELOPE MEMBRANE OF CHLOROPLASTS
160, TRANSLOCON AT THE OUTER
ENVELOPE MEMBRANE OF CHLOROPLASTS
86		 0.84 0.3 -0.3
45 AT3G46740 translocon at the outer envelope membrane of chloroplasts
75-III		 MODIFIER OF ARG1 1, translocon at
the outer envelope membrane of
chloroplasts 75-III		 0.84 0.31 -0.32
46 AT1G63680 acid-amino acid ligases;ligases;ATP binding;ATP
binding;ligases		 ALBINO OR PALE-GREEN 13, ATMURE,
MURE, PIGMENT DEFECTIVE EMBRYO 316		 0.84 0.31 -0.29
47 AT2G18940 Tetratricopeptide repeat (TPR)-like superfamily protein 0.84 0.31 -0.35
48 AT3G04650 FAD/NAD(P)-binding oxidoreductase family protein 0.84 0.32 -0.32
49 AT3G03310 lecithin:cholesterol acyltransferase 3 ARABIDOPSIS LECITHIN:CHOLESTEROL
ACYLTRANSFERASE 3,
lecithin:cholesterol
acyltransferase 3		 -0.84 0.3 -0.29
50 AT5G64580 AAA-type ATPase family protein EMBRYO DEFECTIVE 3144 0.84 0.29 -0.31
51 AT5G18570 GTP1/OBG family protein ATOBGC, OBG-like protein,
chloroplastic SAR1, EMBRYO
DEFECTIVE 269, EMBRYO DEFECTIVE
3138		 0.84 0.31 -0.31
52 AT1G69200 fructokinase-like 2 fructokinase-like 2 0.84 0.31 -0.3
53 AT3G18110 Pentatricopeptide repeat (PPR) superfamily protein embryo defective 1270 0.83 0.3 -0.3
54 AT1G10510 RNI-like superfamily protein embryo defective 2004 0.83 0.34 -0.32
55 AT5G45820 CBL-interacting protein kinase 20 CBL-interacting protein kinase 20,
PROTEIN KINASE 18, SNF1-RELATED
PROTEIN KINASE 3.6		 0.83 0.3 -0.3
56 AT2G24120 DNA/RNA polymerases superfamily protein PIGMENT DEFECTIVE 319, SCABRA 3 0.83 0.31 -0.32
57 AT3G42660 transducin family protein / WD-40 repeat family protein 0.83 0.3 -0.3
58 AT5G24020 septum site-determining protein (MIND) ACCUMULATION AND REPLICATION OF
CHLOROPLASTS 11, ATMIND1, MIND		 0.83 0.3 -0.3
59 AT1G62390 Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein
/ tetratricopeptide repeat (TPR)-containing protein		 CLUMPED CHLOROPLASTS 1, Phox2 0.83 0.31 -0.32
60 AT3G49670 Leucine-rich receptor-like protein kinase family protein BARELY ANY MERISTEM 2 0.82 0.3 -0.3
61 AT4G36390 Methylthiotransferase 0.82 0.31 -0.31
62 AT5G42130 Mitochondrial substrate carrier family protein AtMfl1, MitoFerrinLike1 0.82 0.32 -0.32
63 AT4G39120 myo-inositol monophosphatase like 2 HISTIDINE BIOSYNTHESIS 7,
myo-inositol monophosphatase like
2		 0.82 0.32 -0.3
64 AT3G06770 Pectin lyase-like superfamily protein 0.82 0.32 -0.31
65 AT3G22960 Pyruvate kinase family protein PKP-ALPHA, PLASTIDIAL PYRUVATE
KINASE 1		 0.82 0.33 -0.29
66 AT3G61770 Acid phosphatase/vanadium-dependent haloperoxidase-related
protein		 0.82 0.32 -0.3
67 AT4G19710 aspartate kinase-homoserine dehydrogenase ii ASPARTATE KINASE-HOMOSERINE
DEHYDROGENASE, aspartate
kinase-homoserine dehydrogenase ii		 0.82 0.3 -0.32
68 AT5G63420 RNA-metabolising metallo-beta-lactamase family protein embryo defective 2746 0.82 0.33 -0.32
69 AT5G20130 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.82 0.31 -0.33
70 AT1G79560 FTSH protease 12 EMBRYO DEFECTIVE 1047, EMBRYO
DEFECTIVE 156, EMBRYO DEFECTIVE
36, FTSH protease 12		 0.82 0.32 -0.33
71 AT5G55280 homolog of bacterial cytokinesis Z-ring protein FTSZ 1-1 ARABIDOPSIS THALIANA HOMOLOG OF
BACTERIAL CYTOKINESIS Z-RING
PROTEIN FTSZ 1-1, CHLOROPLAST
FTSZ, homolog of bacterial
cytokinesis Z-ring protein FTSZ
1-1		 0.82 0.33 -0.32
72 AT2G04270 RNAse E/G-like RNAse E/G-like 0.81 0.32 -0.33
73 AT5G23070 Thymidine kinase 0.81 0.29 -0.32
74 AT5G42480 Chaperone DnaJ-domain superfamily protein ACCUMULATION AND REPLICATION OF
CHLOROPLASTS 6		 0.81 0.3 -0.32
75 AT3G19220 protein disulfide isomerases SHI-YO-U MEANS COTYLEDON IN
JAPANESE, SNOWY COTYLEDON 2		 0.81 0.33 -0.32
76 AT3G54090 fructokinase-like 1 fructokinase-like 1 0.81 0.32 -0.33
77 AT5G16715 ATP binding;valine-tRNA ligases;aminoacyl-tRNA
ligases;nucleotide binding;ATP binding;aminoacyl-tRNA
ligases		 embryo defective 2247 0.81 0.32 -0.32
78 AT3G57430 Tetratricopeptide repeat (TPR)-like superfamily protein ORGANELLE TRANSCRIPT PROCESSING 84 0.81 0.31 -0.32
79 AT1G13990 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Protein of unknown function DUF3110 (InterPro:IPR021503);
Has 25 Blast hits to 25 proteins in 8 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink).		 -0.8 0.32 -0.33
80 AT5G57910 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G30630.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.79 0.32 -0.3
81 AT1G23040 hydroxyproline-rich glycoprotein family protein -0.79 0.27 -0.3
82 AT2G02390 glutathione S-transferase zeta 1 glutathione S-transferase zeta 1,
GLUTATHIONE S-TRANSFERASE 18,
glutathione S-transferase zeta 1		 -0.79 0.3 -0.32
83 AT5G06750 Protein phosphatase 2C family protein -0.79 0.32 -0.31
84 AT1G65430 IBR domain-containing protein ARIADNE 8, ARABIDOPSIS ARIADNE 8 -0.78 0.32 -0.33
85 AT4G22820 A20/AN1-like zinc finger family protein -0.78 0.31 -0.32
86 AT3G56310 Melibiase family protein -0.78 0.31 -0.31
87 AT2G37760 NAD(P)-linked oxidoreductase superfamily protein Aldo-keto reductase family 4
member C8		 -0.78 0.32 -0.31
88 AT1G76150 enoyl-CoA hydratase 2 ATECH2, enoyl-CoA hydratase 2 -0.77 0.32 -0.32
89 AT5G57900 SKP1 interacting partner 1 SKP1 interacting partner 1 -0.77 0.32 -0.32
90 AT4G29950 Ypt/Rab-GAP domain of gyp1p superfamily protein -0.77 0.32 -0.32
91 AT4G18580 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.77 0.29 -0.33
92 AT3G51130 unknown protein; CONTAINS InterPro DOMAIN/s:
Uncharacterised protein family UPF0183
(InterPro:IPR005373); Has 269 Blast hits to 265 proteins in
123 species: Archae - 0; Bacteria - 0; Metazoa - 131; Fungi
- 82; Plants - 37; Viruses - 0; Other Eukaryotes - 19
(source: NCBI BLink).		 -0.76 0.32 -0.31
93 AT2G29500 HSP20-like chaperones superfamily protein -0.75 0.33 -0.32
94 AT2G30360 SOS3-interacting protein 4 CBL-INTERACTING PROTEIN KINASE 11,
PROTEIN KINASE SOS2-LIKE 5,
SOS3-interacting protein 4,
SNF1-RELATED PROTEIN KINASE 3.22		 -0.75 0.32 -0.31
95 AT3G11100 sequence-specific DNA binding transcription factors -0.75 0.3 -0.31
96 AT5G64370 beta-ureidopropionase beta-ureidopropionase, PYRIMIDINE
3		 -0.75 0.32 -0.3
97 AT5G02230 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 -0.75 0.32 -0.3
98 AT4G22920 non-yellowing 1 NON-YELLOWING 1, NON-YELLOWING 1 -0.75 0.3 -0.33
99 AT3G14620 cytochrome P450, family 72, subfamily A, polypeptide 8 cytochrome P450, family 72,
subfamily A, polypeptide 8		 -0.75 0.33 -0.3
100 AT4G10050 esterase/lipase/thioesterase family protein -0.74 0.31 -0.31
101 AT5G17650 glycine/proline-rich protein -0.74 0.3 -0.3
102 AT3G11660 NDR1/HIN1-like 1 NDR1/HIN1-like 1 -0.73 0.31 -0.31
103 AT4G30550 Class I glutamine amidotransferase-like superfamily protein gamma-glutamyl peptidase 3 -0.73 0.31 -0.33
104 AT2G32830 phosphate transporter 1;5 phosphate transporter 1;5,
PHOSPHATE TRANSPORTER 5		 -0.73 0.31 -0.31
105 AT1G74410 RING/U-box superfamily protein -0.72 0.33 -0.3
106 AT5G40690 CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site
(InterPro:IPR018247); BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT2G41730.1); Has 1807
Blast hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).		 -0.72 0.3 -0.34
107 AT1G08460 histone deacetylase 8 ATHDA8, histone deacetylase 8,
HISTONE DEACETYLASE 8		 -0.72 0.29 -0.34
108 AT4G05590 CONTAINS InterPro DOMAIN/s: Uncharacterised protein family
UPF0041 (InterPro:IPR005336); BEST Arabidopsis thaliana
protein match is: Uncharacterised protein family (UPF0041)
(TAIR:AT4G22310.1); Has 30201 Blast hits to 17322 proteins
in 780 species: Archae - 12; Bacteria - 1396; Metazoa -
17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
Eukaryotes - 2996 (source: NCBI BLink).		 -0.72 0.33 -0.34
109 AT2G25280 CONTAINS InterPro DOMAIN/s: UPF0103/Mediator of
ErbB2-driven cell motility (Memo), related
(InterPro:IPR002737); Has 1074 Blast hits to 1072 proteins
in 474 species: Archae - 213; Bacteria - 366; Metazoa -
159; Fungi - 135; Plants - 54; Viruses - 0; Other
Eukaryotes - 147 (source: NCBI BLink).		 -0.71 0.31 -0.31
110 AT1G45150 unknown protein; Has 219 Blast hits to 202 proteins in 78
species: Archae - 0; Bacteria - 166; Metazoa - 0; Fungi -
0; Plants - 36; Viruses - 0; Other Eukaryotes - 17 (source:
NCBI BLink).		 -0.71 0.31 -0.32
111 AT3G28950 AIG2-like (avirulence induced gene) family protein -0.71 0.32 -0.34
112 AT3G51430 Calcium-dependent phosphotriesterase superfamily protein STRICTOSIDINE SYNTHASE-LIKE 5,
YELLOW-LEAF-SPECIFIC GENE 2		 -0.7 0.34 -0.3
113 AT1G52140 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G16330.1); Has 114 Blast hits
to 114 proteins in 15 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 114; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.7 0.32 -0.3
114 AT1G69410 eukaryotic elongation factor 5A-3 EUKARYOTIC ELONGATION FACTOR 5A-3,
eukaryotic elongation factor 5A-3		 -0.7 0.31 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
115 C0120 Isocitric acid - Isocitrate TCA cycle variation V (plant),
TCA cycle variation III (eukaryotic),
glutamine biosynthesis III,
glyoxylate cycle 		-0.81 0.43 -0.44 C0120
116 C0220 Pyruvic acid - Pyruvate sucrose degradation to ethanol and lactate (anaerobic),
alanine degradation II (to D-lactate),
alanine degradation III,
glutamine biosynthesis III,
pyruvate fermentation to ethanol II,
serine racemization,
methylerythritol phosphate pathway,
1,4-dihydroxy-2-naphthoate biosynthesis II (plants),
valine biosynthesis,
seleno-amino acid biosynthesis,
phenylalanine degradation III,
an electron-transfer-related quinone + D-lactate -> an electron-transfer-related quinol + pyruvate,
tetrahydrofolate biosynthesis II,
methylglyoxal degradation I,
glycolysis I,
tryptophan biosynthesis,
salicylate biosynthesis I,
pyruvate fermentation to lactate,
methionine biosynthesis II,
glutathione-mediated detoxification II,
IAA biosynthesis I,
TCA cycle variation V (plant),
Rubisco shunt,
gluconeogenesis I,
acetaldehyde biosynthesis I,
homocysteine and cysteine interconversion,
glycolysis IV (plant cytosol),
4-aminobutyrate degradation IV,
beta-alanine biosynthesis II,
isoleucine biosynthesis I (from threonine),
glutamate degradation IV,
lysine biosynthesis VI,
acetyl-CoA biosynthesis (from pyruvate),
alanine biosynthesis II 		-0.76 0.45 -0.44 C0220