AT1G61580 : ARABIDOPSIS RIBOSOMAL PROTEIN 2
Query Information
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AGICode AT1G61580
Description R-protein L3 B
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT1G61580 R-protein L3 B ARABIDOPSIS RIBOSOMAL PROTEIN 2,
R-protein L3 B		 1 0.33 -0.33
2 AT1G79650 Rad23 UV excision repair protein family Arabidopsis thaliana aldehyde
oxidase 1, RADIATION SENSITIVE23B		 0.9 0.31 -0.31
3 AT3G55280 ribosomal protein L23AB RIBOSOMAL PROTEIN L23A2, ribosomal
protein L23AB		 0.87 0.29 -0.32
4 AT1G73980 Phosphoribulokinase / Uridine kinase family -0.86 0.32 -0.32
5 AT3G16780 Ribosomal protein L19e family protein 0.86 0.31 -0.35
6 AT2G19730 Ribosomal L28e protein family 0.86 0.31 -0.32
7 AT1G07070 Ribosomal protein L35Ae family protein 0.85 0.31 -0.31
8 AT3G25620 ABC-2 type transporter family protein ATP-binding cassette G21 -0.85 0.33 -0.32
9 AT1G20950 Phosphofructokinase family protein 0.85 0.31 -0.31
10 AT1G04190 Tetratricopeptide repeat (TPR)-like superfamily protein tetratricopeptide repeat 3 0.85 0.31 -0.31
11 AT4G25740 RNA binding Plectin/S10 domain-containing protein 0.85 0.3 -0.34
12 AT2G18480 Major facilitator superfamily protein -0.84 0.31 -0.3
13 AT3G57490 Ribosomal protein S5 family protein 0.84 0.32 -0.31
14 AT1G54710 homolog of yeast autophagy 18 (ATG18) H homolog of yeast autophagy 18
(ATG18) H, homolog of yeast
autophagy 18 (ATG18) H		 -0.83 0.31 -0.32
15 AT4G25890 60S acidic ribosomal protein family 0.83 0.32 -0.31
16 AT3G57000 nucleolar essential protein-related 0.83 0.31 -0.29
17 AT5G18640 alpha/beta-Hydrolases superfamily protein -0.83 0.32 -0.3
18 AT3G28900 Ribosomal protein L34e superfamily protein 0.83 0.31 -0.31
19 AT3G54750 unknown protein; Has 145 Blast hits to 145 proteins in 60
species: Archae - 0; Bacteria - 0; Metazoa - 99; Fungi - 0;
Plants - 40; Viruses - 0; Other Eukaryotes - 6 (source:
NCBI BLink).		 0.83 0.33 -0.32
20 AT3G18130 receptor for activated C kinase 1C receptor for activated C kinase
1C, receptor for activated C
kinase 1C		 0.83 0.33 -0.31
21 AT3G20050 T-complex protein 1 alpha subunit T-complex protein 1 alpha subunit,
T-complex protein 1 alpha subunit		 0.83 0.31 -0.31
22 AT1G07370 proliferating cellular nuclear antigen 1 PROLIFERATING CELLULAR NUCLEAR
ANTIGEN 1, proliferating cellular
nuclear antigen 1		 0.83 0.3 -0.32
23 AT2G47600 magnesium/proton exchanger magnesium/proton exchanger,
ATMHX1, magnesium/proton
exchanger, MAGNESIUM/PROTON
EXCHANGER 1		 -0.82 0.3 -0.29
24 AT4G05400 copper ion binding 0.82 0.32 -0.33
25 AT4G17520 Hyaluronan / mRNA binding family 0.82 0.34 -0.3
26 AT1G49910 Transducin/WD40 repeat-like superfamily protein BUB (BUDDING UNINHIBITED BY
BENZYMIDAZOL) 3.2		 0.82 0.32 -0.33
27 AT4G23290 cysteine-rich RLK (RECEPTOR-like protein kinase) 21 cysteine-rich RLK (RECEPTOR-like
protein kinase) 21		 0.82 0.32 -0.31
28 AT3G06610 DNA-binding enhancer protein-related 0.82 0.33 -0.3
29 AT3G49590 Autophagy-related protein 13 autophagy-related 13 -0.82 0.32 -0.35
30 AT3G20240 Mitochondrial substrate carrier family protein 0.82 0.33 -0.31
31 AT1G04680 Pectin lyase-like superfamily protein 0.81 0.29 -0.31
32 AT4G32250 Protein kinase superfamily protein -0.81 0.34 -0.36
33 AT1G68820 Transmembrane Fragile-X-F-associated protein -0.81 0.32 -0.31
34 AT2G17700 ACT-like protein tyrosine kinase family protein serine/threonine/tyrosine kinase 8 -0.81 0.28 -0.32
35 AT1G52300 Zinc-binding ribosomal protein family protein 0.81 0.33 -0.3
36 AT1G17560 Ribosomal protein L14p/L23e family protein HUELLENLOS 0.81 0.33 -0.31
37 AT3G51730 saposin B domain-containing protein -0.81 0.31 -0.33
38 AT3G46940 DUTP-PYROPHOSPHATASE-LIKE 1 DUTP-PYROPHOSPHATASE-LIKE 1 0.81 0.33 -0.31
39 AT1G52080 actin binding protein family AR791 -0.81 0.31 -0.34
40 AT3G55010 phosphoribosylformylglycinamidine cyclo-ligase, chloroplast
/ phosphoribosyl-aminoimidazole synthetase / AIR synthase
(PUR5)		 ATPURM, EMBRYO DEFECTIVE 2818,
PUR5		 0.81 0.3 -0.32
41 AT2G26890 DNAJ heat shock N-terminal domain-containing protein GRAVITROPISM DEFECTIVE 2,
KATAMARI2		 -0.81 0.31 -0.32
42 AT3G11250 Ribosomal protein L10 family protein 0.81 0.31 -0.31
43 AT2G27840 histone deacetylase-related / HD-related HISTONE DEACETYLASE 13, HDT04,
HDT4		 0.81 0.3 -0.33
44 AT1G20880 RNA-binding (RRM/RBD/RNP motifs) family protein -0.81 0.31 -0.32
45 AT3G09770 RING/U-box superfamily protein LOSS OF GDU 2 -0.81 0.31 -0.32
46 AT5G05180 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G10880.1); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
Other Eukaryotes - 339 (source: NCBI BLink).		 0.81 0.3 -0.31
47 AT4G34740 GLN phosphoribosyl pyrophosphate amidotransferase 2 GLN phosphoribosyl pyrophosphate
amidotransferase 2, GLN
phosphoribosyl pyrophosphate
amidotransferase 2, ATPURF2,
CHLOROPLAST IMPORT APPARATUS 1		 0.8 0.36 -0.3
48 AT4G13270 Late embryogenesis abundant (LEA) hydroxyproline-rich
glycoprotein family		 -0.8 0.31 -0.31
49 AT4G18140 SCP1-like small phosphatase 4b SCP1-like small phosphatase 4b -0.8 0.33 -0.31
50 AT3G17000 ubiquitin-conjugating enzyme 32 ubiquitin-conjugating enzyme 32 -0.8 0.31 -0.3
51 AT1G02970 WEE1 kinase homolog ATWEE1, WEE1 kinase homolog 0.8 0.3 -0.32
52 AT5G02530 RNA-binding (RRM/RBD/RNP motifs) family protein 0.8 0.31 -0.31
53 AT3G12400 Ubiquitin-conjugating enzyme/RWD-like protein ATELC, ELC -0.8 0.31 -0.33
54 AT3G04400 Ribosomal protein L14p/L23e family protein embryo defective 2171 0.8 0.31 -0.34
55 AT1G70480 Domain of unknown function (DUF220) -0.8 0.31 -0.3
56 AT1G50940 electron transfer flavoprotein alpha electron transfer flavoprotein
alpha		 -0.8 0.32 -0.3
57 AT5G44900 Toll-Interleukin-Resistance (TIR) domain family protein 0.79 0.31 -0.3
58 AT5G57550 xyloglucan endotransglucosylase/hydrolase 25 xyloglucan
endotransglucosylase/hydrolase 25,
xyloglucan endotransglycosylase 3		 -0.79 0.32 -0.32
59 AT3G04770 40s ribosomal protein SA B 40s ribosomal protein SA B 0.79 0.31 -0.32
60 AT4G18160 Ca2+ activated outward rectifying K+ channel 6 CA2+ ACTIVATED OUTWARD RECTIFYING
K+ CHANNEL 6, ATTPK3, Ca2+
activated outward rectifying K+
channel 6, TPK3		 -0.79 0.33 -0.3
61 AT2G14460 unknown protein; Has 3 Blast hits to 3 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.79 0.31 -0.3
62 AT3G45160 Putative membrane lipoprotein 0.79 0.33 -0.3
63 AT4G27990 YGGT family protein ATYLMG1-2, YLMG1-2 -0.79 0.31 -0.33
64 AT4G03030 Galactose oxidase/kelch repeat superfamily protein -0.79 0.31 -0.31
65 AT1G54130 RELA/SPOT homolog 3 AT-RSH3, RELA/SPOT HOMOLOG 3,
RELA/SPOT homolog 3		 -0.79 0.29 -0.32
66 AT3G16080 Zinc-binding ribosomal protein family protein 0.79 0.3 -0.33
67 AT3G15580 Ubiquitin-like superfamily protein AUTOPHAGY 8H, AUTOPHAGY 8I -0.79 0.36 -0.33
68 AT3G56620 nodulin MtN21 /EamA-like transporter family protein -0.79 0.32 -0.31
69 AT1G49670 ARP protein (REF) NQR -0.78 0.34 -0.34
70 AT3G53960 Major facilitator superfamily protein -0.78 0.31 -0.33
71 AT5G11840 Protein of unknown function (DUF1230) -0.78 0.31 -0.29
72 AT3G04480 endoribonucleases 0.78 0.32 -0.33
73 AT5G22850 Eukaryotic aspartyl protease family protein -0.78 0.36 -0.32
74 AT3G51895 sulfate transporter 3;1 AST12, sulfate transporter 3;1 -0.78 0.31 -0.31
75 AT5G61000 Replication factor-A protein 1-related ATRPA70D, RPA70D 0.78 0.32 -0.31
76 AT1G03110 Transducin/WD40 repeat-like superfamily protein AtTRM82, tRNA modification 82 0.78 0.31 -0.32
77 AT2G07340 PREFOLDIN 1 PREFOLDIN 1 0.78 0.34 -0.32
78 AT5G43430 electron transfer flavoprotein beta electron transfer flavoprotein
beta		 -0.78 0.32 -0.32
79 AT1G01710 Acyl-CoA thioesterase family protein -0.77 0.34 -0.3
80 AT5G05570 transducin family protein / WD-40 repeat family protein -0.77 0.31 -0.29
81 AT1G65430 IBR domain-containing protein ARIADNE 8, ARABIDOPSIS ARIADNE 8 -0.77 0.31 -0.31
82 AT4G33090 aminopeptidase M1 aminopeptidase M1, AMINOPEPTIDASE
M1		 -0.77 0.33 -0.29
83 AT2G20920 Protein of unknown function (DUF3353) -0.77 0.31 -0.33
84 AT5G53350 CLP protease regulatory subunit X CLP protease regulatory subunit X -0.77 0.31 -0.31
85 AT1G18270 ketose-bisphosphate aldolase class-II family protein -0.77 0.31 -0.31
86 AT4G20930 6-phosphogluconate dehydrogenase family protein -0.77 0.32 -0.31
87 AT3G55070 LisH/CRA/RING-U-box domains-containing protein -0.76 0.33 -0.32
88 AT1G62310 transcription factor jumonji (jmjC) domain-containing
protein		 -0.76 0.32 -0.32
89 AT4G37980 elicitor-activated gene 3-1 ATCAD7, CINNAMYL-ALCOHOL
DEHYDROGENASE 7,
ELICITOR-ACTIVATED GENE 3,
elicitor-activated gene 3-1		 -0.76 0.32 -0.31
90 AT5G66750 chromatin remodeling 1 ATDDM1, CHA1, CHROMATIN REMODELING
1, chromatin remodeling 1,
DECREASED DNA METHYLATION 1,
SOMNIFEROUS 1, SOM4		 0.76 0.31 -0.32
91 AT1G03820 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 21 plant structures;
EXPRESSED DURING: 13 growth stages; Has 1345 Blast hits to
1122 proteins in 102 species: Archae - 2; Bacteria - 28;
Metazoa - 28; Fungi - 30; Plants - 109; Viruses - 0; Other
Eukaryotes - 1148 (source: NCBI BLink).		 0.76 0.33 -0.32
92 AT2G38810 histone H2A 8 histone H2A 8 0.76 0.29 -0.32
93 AT1G24280 glucose-6-phosphate dehydrogenase 3 glucose-6-phosphate dehydrogenase
3		 0.76 0.3 -0.33
94 AT1G74560 NAP1-related protein 1 NAP1-related protein 1 0.76 0.3 -0.3
95 AT4G30490 AFG1-like ATPase family protein -0.76 0.3 -0.32
96 AT1G03360 ribosomal RNA processing 4 ribosomal RNA processing 4,
ribosomal RNA processing 4		 0.76 0.32 -0.31
97 AT1G72710 casein kinase 1-like protein 2 casein kinase 1-like protein 2 -0.76 0.33 -0.33
98 AT4G36040 Chaperone DnaJ-domain superfamily protein DnaJ11 -0.76 0.31 -0.3
99 AT5G65860 ankyrin repeat family protein 0.76 0.32 -0.32
100 AT2G35605 SWIB/MDM2 domain superfamily protein 0.76 0.3 -0.31
101 AT2G44130 Galactose oxidase/kelch repeat superfamily protein -0.76 0.32 -0.3
102 AT1G20560 acyl activating enzyme 1 acyl activating enzyme 1 -0.75 0.31 -0.29
103 AT5G13800 pheophytinase Co-regulated with NYE1,
pheophytinase		 -0.75 0.31 -0.3
104 AT1G05940 cationic amino acid transporter 9 cationic amino acid transporter 9 -0.75 0.33 -0.35
105 AT4G30790 INVOLVED IN: autophagy; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 15 growth stages; CONTAINS InterPro
DOMAIN/s: Autophagy-related protein 17
(InterPro:IPR007240), Autophagy-related protein 11
(InterPro:IPR019460); Has 8793 Blast hits to 6268 proteins
in 570 species: Archae - 89; Bacteria - 657; Metazoa -
4844; Fungi - 808; Plants - 441; Viruses - 15; Other
Eukaryotes - 1939 (source: NCBI BLink).		 -0.75 0.33 -0.35
106 AT5G24800 basic leucine zipper 9 ARABIDOPSIS THALIANA BASIC LEUCINE
ZIPPER 9, basic leucine zipper 9,
BASIC LEUCINE ZIPPER O2 HOMOLOG 2		 -0.75 0.29 -0.32
107 AT1G05840 Eukaryotic aspartyl protease family protein -0.75 0.32 -0.32
108 AT1G58200 MSCS-like 3 MSCS-like 3 -0.75 0.33 -0.31
109 AT3G43230 RING/FYVE/PHD-type zinc finger family protein -0.75 0.31 -0.31
110 AT3G28007 Nodulin MtN3 family protein AtSWEET4, SWEET4 -0.75 0.31 -0.34
111 AT3G19990 unknown protein; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN:
23 plant structures; EXPRESSED DURING: 13 growth stages;
Has 118 Blast hits to 118 proteins in 41 species: Archae -
0; Bacteria - 42; Metazoa - 0; Fungi - 0; Plants - 56;
Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).		 -0.75 0.31 -0.33
112 AT3G44880 Pheophorbide a oxygenase family protein with Rieske
[2Fe-2S] domain		 ACCELERATED CELL DEATH 1, LETHAL
LEAF-SPOT 1 HOMOLOG, PHEOPHORBIDE
A OXYGENASE		 -0.75 0.32 -0.33
113 AT1G24070 cellulose synthase-like A10 cellulose synthase-like A10,
CELLULOSE SYNTHASE LIKE A10,
cellulose synthase-like A10		 -0.75 0.33 -0.34
114 AT2G31260 autophagy 9 (APG9) autophagy 9, ATAPG9 -0.75 0.3 -0.33
115 AT5G35560 DENN (AEX-3) domain-containing protein -0.75 0.32 -0.31
116 AT2G38050 3-oxo-5-alpha-steroid 4-dehydrogenase family protein ATDET2, DE-ETIOLATED 2, DWARF 6 -0.75 0.31 -0.33
117 AT1G76490 hydroxy methylglutaryl CoA reductase 1 AtHMGR1, hydroxy methylglutaryl
CoA reductase 1,
3-HYDROXY-3-METHYLGLUTARYL COA
REDUCTASE 1		 -0.75 0.32 -0.32
118 AT5G06370 NC domain-containing protein-related -0.75 0.32 -0.32
119 AT5G48020 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 -0.74 0.32 -0.34
120 AT2G22430 homeobox protein 6 homeobox protein 6, homeobox
protein 6		 -0.74 0.32 -0.3
121 AT5G49660 Leucine-rich repeat transmembrane protein kinase family
protein		 XYLEM INTERMIXED WITH PHLOEM 1 -0.74 0.31 -0.32
122 AT1G76460 RNA-binding (RRM/RBD/RNP motifs) family protein -0.73 0.34 -0.31
123 AT1G08460 histone deacetylase 8 ATHDA8, histone deacetylase 8,
HISTONE DEACETYLASE 8		 -0.73 0.31 -0.3
124 AT3G17250 Protein phosphatase 2C family protein -0.73 0.33 -0.32
125 AT3G16785 phospholipase D P1 PHOSPHOLIPASE D ZETA 1,
phospholipase D P1, PHOSPHOLIPASE
D ZETA1, PLDZETA1		 -0.73 0.32 -0.3
126 AT3G62010 unknown protein; LOCATED IN: cellular_component unknown;
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15
growth stages; Has 553 Blast hits to 216 proteins in 93
species: Archae - 0; Bacteria - 124; Metazoa - 193; Fungi -
58; Plants - 108; Viruses - 0; Other Eukaryotes - 70
(source: NCBI BLink).		 -0.73 0.32 -0.29
127 AT1G04970 lipid-binding serum glycoprotein family protein -0.73 0.32 -0.31
128 AT5G57815 Cytochrome c oxidase, subunit Vib family protein -0.73 0.32 -0.32
129 AT2G25490 EIN3-binding F box protein 1 EIN3-binding F box protein 1, FBL6 -0.73 0.31 -0.3
130 AT2G24860 DnaJ/Hsp40 cysteine-rich domain superfamily protein -0.73 0.31 -0.33
131 AT5G57390 AINTEGUMENTA-like 5 AINTEGUMENTA-like 5, CHOTTO 1,
EMBRYOMAKER, PLETHORA 5		 -0.73 0.29 -0.33
132 AT4G11570 Haloacid dehalogenase-like hydrolase (HAD) superfamily
protein		 -0.73 0.3 -0.32
133 AT4G24520 P450 reductase 1 ARABIDOPSIS CYTOCHROME REDUCTASE,
P450 reductase 1		 -0.73 0.32 -0.3
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
134 C0220 Pyruvic acid - Pyruvate sucrose degradation to ethanol and lactate (anaerobic),
alanine degradation II (to D-lactate),
alanine degradation III,
glutamine biosynthesis III,
pyruvate fermentation to ethanol II,
serine racemization,
methylerythritol phosphate pathway,
1,4-dihydroxy-2-naphthoate biosynthesis II (plants),
valine biosynthesis,
seleno-amino acid biosynthesis,
phenylalanine degradation III,
an electron-transfer-related quinone + D-lactate -> an electron-transfer-related quinol + pyruvate,
tetrahydrofolate biosynthesis II,
methylglyoxal degradation I,
glycolysis I,
tryptophan biosynthesis,
salicylate biosynthesis I,
pyruvate fermentation to lactate,
methionine biosynthesis II,
glutathione-mediated detoxification II,
IAA biosynthesis I,
TCA cycle variation V (plant),
Rubisco shunt,
gluconeogenesis I,
acetaldehyde biosynthesis I,
homocysteine and cysteine interconversion,
glycolysis IV (plant cytosol),
4-aminobutyrate degradation IV,
beta-alanine biosynthesis II,
isoleucine biosynthesis I (from threonine),
glutamate degradation IV,
lysine biosynthesis VI,
acetyl-CoA biosynthesis (from pyruvate),
alanine biosynthesis II 		-0.77 0.45 -0.43 C0220
135 C0257 Tryptophan L-Tryptophan L-Tryptophan glucosinolate biosynthesis from tryptophan,
IAA biosynthesis I,
tryptophan biosynthesis,
camalexin biosynthesis,
tRNA charging 		-0.77 0.3 -0.31 C0257
136 C0260 Tyrosine L-(-)-Tyrosine L-Tyrosine tyrosine biosynthesis II,
4-hydroxyphenylpyruvate biosynthesis,
tyrosine degradation I,
tyrosine biosynthesis I,
tRNA charging,
hydroxycinnamic acid tyramine amides biosynthesis 		-0.74 0.32 -0.3 C0260
137 C0014 O-Acetylserine O-Acetyl-L-serine O-Acetyl-L-serine cysteine biosynthesis I,
seleno-amino acid biosynthesis 		-0.73 0.32 -0.31 C0014