AT2G25670 : -
Query Information
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AGICode AT2G25670
Description BEST Arabidopsis thaliana protein match is: copper ion binding (TAIR:AT4G32610.1); Has 43784 Blast hits to 26928 proteins in 1799 species: Archae - 86; Bacteria - 6347; Metazoa - 15971; Fungi - 5398; Plants - 1931; Viruses - 259; Other Eukaryotes - 13792 (source: NCBI BLink).
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT2G25670 BEST Arabidopsis thaliana protein match is: copper ion
binding (TAIR:AT4G32610.1); Has 43784 Blast hits to 26928
proteins in 1799 species: Archae - 86; Bacteria - 6347;
Metazoa - 15971; Fungi - 5398; Plants - 1931; Viruses -
259; Other Eukaryotes - 13792 (source: NCBI BLink).		 1 0.31 -0.3
2 AT3G13230 RNA-binding KH domain-containing protein 0.9 0.31 -0.31
3 AT2G34570 PIN domain-like family protein maternal effect embryo arrest 21 0.89 0.32 -0.31
4 AT5G02470 Transcription factor DP DPA 0.87 0.3 -0.34
5 AT3G23620 Ribosomal RNA processing Brix domain protein 0.87 0.31 -0.31
6 AT5G61770 PETER PAN-like protein PETER PAN-like protein 0.87 0.3 -0.32
7 AT4G29410 Ribosomal L28e protein family 0.87 0.31 -0.31
8 AT4G27380 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 0.87 0.32 -0.33
9 AT5G20160 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.87 0.32 -0.31
10 AT3G22230 Ribosomal L27e protein family 0.87 0.32 -0.3
11 AT5G02500 heat shock cognate protein 70-1 ARABIDOPSIS THALIANA HEAT SHOCK
COGNATE PROTEIN 70-1, AtHsp70-1,
HEAT SHOCK COGNATE PROTEIN 70,
heat shock cognate protein 70-1,
HEAT SHOCK PROTEIN 70-1		 0.86 0.32 -0.34
12 AT2G28600 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.86 0.33 -0.34
13 AT4G15770 RNA binding 0.86 0.29 -0.32
14 AT3G62870 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.86 0.32 -0.32
15 AT5G61020 evolutionarily conserved C-terminal region 3 evolutionarily conserved
C-terminal region 3		 0.86 0.32 -0.32
16 AT4G02220 zinc finger (MYND type) family protein / programmed cell
death 2 C-terminal domain-containing protein		 0.85 0.32 -0.32
17 AT5G09510 Ribosomal protein S19 family protein 0.85 0.35 -0.3
18 AT1G11320 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
mitochondrion, plastid; EXPRESSED IN: 7 plant structures;
EXPRESSED DURING: C globular stage, F mature embryo stage,
petal differentiation and expansion stage, E expanded
cotyledon stage, D bilateral stage; Has 46 Blast hits to 46
proteins in 14 species: Archae - 0; Bacteria - 2; Metazoa -
0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).		 0.85 0.29 -0.3
19 AT3G12390 Nascent polypeptide-associated complex (NAC), alpha subunit
family protein		 0.85 0.31 -0.32
20 AT4G12600 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.85 0.31 -0.32
21 AT2G37990 ribosome biogenesis regulatory protein (RRS1) family
protein		 0.84 0.32 -0.3
22 AT4G34740 GLN phosphoribosyl pyrophosphate amidotransferase 2 GLN phosphoribosyl pyrophosphate
amidotransferase 2, GLN
phosphoribosyl pyrophosphate
amidotransferase 2, ATPURF2,
CHLOROPLAST IMPORT APPARATUS 1		 0.84 0.3 -0.3
23 AT5G14050 Transducin/WD40 repeat-like superfamily protein 0.84 0.3 -0.33
24 AT5G57280 S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein		 root initiation defective 2 0.84 0.33 -0.31
25 AT5G56670 Ribosomal protein S30 family protein 0.84 0.3 -0.33
26 AT3G20050 T-complex protein 1 alpha subunit T-complex protein 1 alpha subunit,
T-complex protein 1 alpha subunit		 0.84 0.34 -0.31
27 AT5G47210 Hyaluronan / mRNA binding family 0.84 0.32 -0.32
28 AT2G34260 transducin family protein / WD-40 repeat family protein human WDR55 (WD40 repeat) homolog 0.84 0.33 -0.31
29 AT4G22380 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein 0.84 0.33 -0.29
30 AT5G41970 Metal-dependent protein hydrolase 0.83 0.32 -0.31
31 AT1G10840 translation initiation factor 3 subunit H1 translation initiation factor 3
subunit H1		 0.83 0.33 -0.33
32 AT1G80750 Ribosomal protein L30/L7 family protein 0.83 0.33 -0.32
33 AT2G45710 Zinc-binding ribosomal protein family protein 0.83 0.32 -0.31
34 AT2G25210 Ribosomal protein L39 family protein 0.83 0.31 -0.32
35 AT2G32220 Ribosomal L27e protein family 0.83 0.32 -0.31
36 AT3G13920 eukaryotic translation initiation factor 4A1 eukaryotic translation initiation
factor 4A1, RH4, TIF4A1		 0.83 0.31 -0.31
37 AT1G50920 Nucleolar GTP-binding protein 0.83 0.33 -0.32
38 AT2G19740 Ribosomal protein L31e family protein 0.83 0.3 -0.32
39 AT1G01940 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family
protein		 0.83 0.3 -0.33
40 AT1G54770 Fcf2 pre-rRNA processing protein 0.82 0.32 -0.31
41 AT1G34020 Nucleotide-sugar transporter family protein 0.82 0.32 -0.32
42 AT5G58420 Ribosomal protein S4 (RPS4A) family protein 0.82 0.33 -0.31
43 AT2G17670 Tetratricopeptide repeat (TPR)-like superfamily protein 0.82 0.29 -0.31
44 AT1G06380 Ribosomal protein L1p/L10e family 0.82 0.31 -0.34
45 AT5G44320 Eukaryotic translation initiation factor 3 subunit 7
(eIF-3)		 0.82 0.31 -0.31
46 AT1G75200 flavodoxin family protein / radical SAM domain-containing
protein		 0.82 0.33 -0.33
47 AT2G44510 CDK inhibitor P21 binding protein 0.82 0.33 -0.31
48 AT1G18850 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 40 Blast hits to 40 proteins
in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 0.82 0.3 -0.32
49 AT3G25940 TFIIB zinc-binding protein 0.81 0.3 -0.32
50 AT5G19320 RAN GTPase activating protein 2 RAN GTPase activating protein 2 0.81 0.32 -0.3
51 AT5G57990 ubiquitin-specific protease 23 ubiquitin-specific protease 23 0.81 0.33 -0.32
52 AT1G48920 nucleolin like 1 nucleolin like 1, nucleolin like
1, PARALLEL 1		 0.81 0.31 -0.33
53 AT5G44370 phosphate transporter 4;6 phosphate transporter 4;6 0.81 0.31 -0.32
54 AT4G38100 unknown protein; LOCATED IN: chloroplast thylakoid
membrane; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT4G01150.1); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.81 0.31 -0.31
55 AT2G45860 unknown protein; Has 32 Blast hits to 32 proteins in 13
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).		 0.81 0.31 -0.29
56 AT2G41840 Ribosomal protein S5 family protein 0.81 0.31 -0.32
57 AT2G04690 Pyridoxamine 5'-phosphate oxidase family protein -0.81 0.31 -0.3
58 AT2G44860 Ribosomal protein L24e family protein 0.81 0.31 -0.32
59 AT5G05470 eukaryotic translation initiation factor 2 alpha subunit ATEIF2-A2, eukaryotic translation
initiation factor 2 alpha subunit,
EIF2-A2		 0.81 0.31 -0.33
60 AT2G24050 MIF4G domain-containing protein / MA3 domain-containing
protein		 eukaryotic translation Initiation
Factor isoform 4G2		 0.81 0.33 -0.31
61 AT4G38710 glycine-rich protein 0.81 0.33 -0.31
62 AT4G13530 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G10080.1); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 -0.81 0.32 -0.31
63 AT4G10620 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 0.81 0.3 -0.31
64 AT3G44750 histone deacetylase 3 ATHD2A, HISTONE DEACETYLASE 2A,
histone deacetylase 3, HDT1		 0.81 0.29 -0.3
65 AT3G56150 eukaryotic translation initiation factor 3C ATEIF3C-1, ATTIF3C1, eukaryotic
translation initiation factor 3C,
EIF3C-1, TIF3C1		 0.81 0.32 -0.32
66 AT5G52470 fibrillarin 1 ATFBR1, ATFIB1, FIBRILLARIN 1,
fibrillarin 1,
SKP1/ASK1-INTERACTING PROTEIN		 0.81 0.33 -0.29
67 AT3G60245 Zinc-binding ribosomal protein family protein 0.81 0.32 -0.3
68 AT1G66070 Translation initiation factor eIF3 subunit 0.8 0.32 -0.29
69 AT3G57000 nucleolar essential protein-related 0.8 0.3 -0.29
70 AT4G31985 Ribosomal protein L39 family protein 0.8 0.3 -0.32
71 AT1G31860 histidine biosynthesis bifunctional protein (HISIE) AT-IE, HISTIDINE BIOSYNTHESIS 2 0.8 0.31 -0.32
72 AT1G13160 ARM repeat superfamily protein 0.8 0.3 -0.3
73 AT3G57490 Ribosomal protein S5 family protein 0.8 0.32 -0.31
74 AT4G39280 phenylalanyl-tRNA synthetase, putative /
phenylalanine--tRNA ligase, putative		 0.8 0.33 -0.32
75 AT2G36690 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein		 0.8 0.32 -0.33
76 AT4G24940 SUMO-activating enzyme 1A AT-SAE1-1, SUMO-ACTIVATING ENZYME
1A, SUMO-activating enzyme 1A		 0.8 0.31 -0.32
77 AT4G29510 arginine methyltransferase 11 ARABIDOPSIS THALIANA ARGININE
METHYLTRANSFERASE 11, ARABIDOPSIS
THALIANA PROTEIN ARGININE
METHYLTRANSFERASE 1B, arginine
methyltransferase 11, PROTEIN
ARGININE METHYLTRANSFERASE 1B		 0.8 0.31 -0.3
78 AT2G39990 eukaryotic translation initiation factor 2 Arabidopsis thaliana eukaryotic
translation initiation factor 3
subunit F, eukaryotic translation
initiation factor 2, eukaryotic
translation initiation factor 3
subunit F		 0.8 0.3 -0.31
79 AT4G16520 Ubiquitin-like superfamily protein autophagy 8f -0.78 0.3 -0.31
80 AT1G64370 unknown protein; Has 773 Blast hits to 375 proteins in 118
species: Archae - 0; Bacteria - 97; Metazoa - 421; Fungi -
108; Plants - 31; Viruses - 0; Other Eukaryotes - 116
(source: NCBI BLink).		 -0.78 0.33 -0.32
81 AT3G53950 glyoxal oxidase-related protein -0.77 0.3 -0.32
82 AT5G23050 acyl-activating enzyme 17 acyl-activating enzyme 17 -0.77 0.3 -0.34
83 AT5G18640 alpha/beta-Hydrolases superfamily protein -0.77 0.32 -0.29
84 AT5G18630 alpha/beta-Hydrolases superfamily protein -0.77 0.33 -0.32
85 AT4G19860 alpha/beta-Hydrolases superfamily protein -0.76 0.3 -0.31
86 AT5G01770 HEAT repeat ;WD domain, G-beta repeat protein protein ATRAPTOR1A, RAPTOR1A, RAPTOR2 -0.76 0.32 -0.32
87 AT1G30500 nuclear factor Y, subunit A7 nuclear factor Y, subunit A7 -0.76 0.31 -0.3
88 AT1G79380 Ca(2)-dependent phospholipid-binding protein (Copine)
family		 -0.75 0.3 -0.31
89 AT1G26670 Vesicle transport v-SNARE family protein ATVTI12, VESICAL TRANSPORT V-SNARE
12, VTI1B		 -0.75 0.32 -0.32
90 AT3G14067 Subtilase family protein -0.75 0.31 -0.31
91 AT1G22370 UDP-glucosyl transferase 85A5 UDP-glucosyl transferase 85A5,
UDP-glucosyl transferase 85A5		 -0.75 0.29 -0.31
92 AT5G16800 Acyl-CoA N-acyltransferases (NAT) superfamily protein -0.75 0.3 -0.33
93 AT1G58180 beta carbonic anhydrase 6 A. THALIANA BETA CARBONIC
ANHYDRASE 6, beta carbonic
anhydrase 6		 -0.75 0.31 -0.31
94 AT3G26580 Tetratricopeptide repeat (TPR)-like superfamily protein -0.74 0.32 -0.32
95 AT5G49710 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G24590.1); Has 35333 Blast
hits to 34131 proteins in 2444 species: Archae - 798;
Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531;
Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).		 -0.73 0.31 -0.32
96 AT1G78680 gamma-glutamyl hydrolase 2 gamma-glutamyl hydrolase 2,
gamma-glutamyl hydrolase 2		 -0.73 0.3 -0.31
97 AT4G19160 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).		 -0.73 0.29 -0.31
98 AT3G06780 glycine-rich protein -0.73 0.28 -0.31
99 AT3G52070 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 23 Blast hits to 23 proteins
in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).		 -0.73 0.29 -0.31
100 AT2G46030 ubiquitin-conjugating enzyme 6 ubiquitin-conjugating enzyme 6 -0.72 0.32 -0.31
101 AT3G52060 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase
family protein		 -0.72 0.32 -0.3
102 AT2G39450 Cation efflux family protein ATMTP11, MTP11 -0.72 0.31 -0.31
103 AT1G76460 RNA-binding (RRM/RBD/RNP motifs) family protein -0.71 0.3 -0.32
104 AT5G63200 tetratricopeptide repeat (TPR)-containing protein -0.71 0.33 -0.32
105 AT1G70790 Calcium-dependent lipid-binding (CaLB domain) family
protein		 -0.71 0.31 -0.33
106 AT2G35950 embryo sac development arrest 12 embryo sac development arrest 12 -0.7 0.32 -0.32
107 AT3G10940 dual specificity protein phosphatase (DsPTP1) family
protein		 LIKE SEX4 2 -0.69 0.31 -0.31
108 AT3G02340 RING/U-box superfamily protein -0.69 0.31 -0.29
109 AT3G23640 heteroglycan glucosidase 1 heteroglycan glucosidase 1 -0.69 0.33 -0.32
110 AT1G44770 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G49710.3); Has 81 Blast hits
to 81 proteins in 17 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 81; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.68 0.29 -0.31
111 AT5G05230 RING/U-box superfamily protein -0.68 0.3 -0.34
112 AT2G14520 CBS domain-containing protein with a domain of unknown
function (DUF21)		 -0.68 0.33 -0.31
113 AT5G43600 ureidoglycolate amidohydrolase ARABIDOPSIS THALIANA ALLANTOATE
AMIDOHYDROLASE 2, ureidoglycolate
amidohydrolase		 -0.68 0.31 -0.32
114 AT3G10420 P-loop containing nucleoside triphosphate hydrolases
superfamily protein		 SEEDLING PLASTID DEVELOPMENT 1 -0.67 0.31 -0.33
115 AT5G58200 Calcineurin-like metallo-phosphoesterase superfamily
protein		 -0.66 0.33 -0.32
116 AT3G16700 Fumarylacetoacetate (FAA) hydrolase family -0.66 0.33 -0.3
117 AT1G30200 F-box family protein -0.66 0.33 -0.34
118 AT1G71480 Nuclear transport factor 2 (NTF2) family protein -0.65 0.32 -0.34
119 AT5G52880 F-box family protein -0.65 0.31 -0.32
120 AT1G54230 Winged helix-turn-helix transcription repressor DNA-binding -0.65 0.35 -0.32
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
121 C0053 ADP - ADP phosphatidylcholine biosynthesis I,
mannitol degradation II,
lipid IVA biosynthesis,
stachyose degradation,
Rubisco shunt,
copper transport II,
glycerol degradation IV,
chorismate biosynthesis,
folate polyglutamylation II,
galactose degradation III,
D-myo-inositol (1,4,5)-trisphosphate biosynthesis,
UDP-L-arabinose biosynthesis II (from L-arabinose),
cadmium transport I,
folate polyglutamylation,
coenzyme A biosynthesis,
sulfate activation for sulfonation,
1,4-dihydroxy-2-naphthoate biosynthesis II (plants),
pyrimidine deoxyribonucleotides de novo biosynthesis I,
galactose degradation II,
inosine-5'-phosphate biosynthesis II,
ribose degradation,
acetyl-CoA biosynthesis (from citrate),
inositol pyrophosphates biosynthesis,
fatty acid biosynthesis initiation I,
xylose degradation I,
adenine and adenosine salvage VI,
TCA cycle variation III (eukaryotic),
tetrahydrofolate biosynthesis II,
phosphatidylethanolamine biosynthesis II,
pyridoxal 5'-phosphate salvage pathway,
citrulline biosynthesis,
trans-zeatin biosynthesis,
glutamine biosynthesis I,
arginine biosynthesis II (acetyl cycle),
L-Ndelta-acetylornithine biosynthesis,
mevalonate pathway I,
methionine biosynthesis II,
trehalose degradation II (trehalase),
citrulline degradation,
methionine salvage pathway,
TCA cycle variation V (plant),
chlorophyllide a biosynthesis I,
starch degradation I,
methylerythritol phosphate pathway,
pyridine nucleotide cycling (plants),
ceramide degradation,
biotin-carboxyl carrier protein assembly,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
UDP-D-galacturonate biosynthesis II (from D-galacturonate),
asparagine biosynthesis III (tRNA-dependent),
superpathway of glyoxylate cycle and fatty acid degradation,
NAD/NADH phosphorylation and dephosphorylation,
1D-myo-inositol hexakisphosphate biosynthesis V (from Ins(1,3,4)P3),
galactose degradation I (Leloir pathway),
uridine-5'-phosphate biosynthesis,
lipid-dependent phytate biosynthesis II (via Ins(1,3,4)P3),
sucrose degradation III,
lysine biosynthesis VI,
sphingolipid biosynthesis (plants),
choline biosynthesis I,
GDP-glucose biosynthesis,
photorespiration,
gamma-glutamyl cycle (plant pathway),
5-aminoimidazole ribonucleotide biosynthesis I,
gamma-glutamyl cycle,
thiamine biosynthesis II,
proline biosynthesis III,
glutathione biosynthesis,
folate transformations II,
ornithine biosynthesis,
diphthamide biosynthesis,
S-methyl-5'-thioadenosine degradation I,
starch biosynthesis,
arginine biosynthesis I,
homoserine biosynthesis,
flavin biosynthesis I (bacteria and plants),
sucrose biosynthesis I,
leucine degradation I,
glycolysis I,
pyrimidine ribonucleotides interconversion,
1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza),
glycolysis IV (plant cytosol),
Calvin-Benson-Bassham cycle,
UDP-D-glucuronate biosynthesis (from myo-inositol),
guanine and guanosine salvage III,
glutamine biosynthesis III,
L-glutamine biosynthesis II (tRNA-dependent),
GDP-L-fucose biosynthesis II (from L-fucose),
nitrate reduction II (assimilatory),
ammonia assimilation cycle II,
gluconeogenesis I,
threonine biosynthesis from homoserine,
mannose degradation,
urea cycle,
lipid-dependent phytate biosynthesis I (via Ins(1,4,5)P3),
biotin biosynthesis II 		-0.66 0.45 -0.45 C0053