AT2G39550 : GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT
Query Information
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AGICode AT2G39550
Description Prenyltransferase family protein
Gene information
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  Gene Code Description / Information Gene name Correlation link
pcc 2.5% 97.5% PPI
1 AT2G39550 Prenyltransferase family protein GERANYLGERANYLTRANSFERASE-I BETA
SUBUNIT, GGB, PGGT-I		 1 0.31 -0.32
2 AT5G21060 Glyceraldehyde-3-phosphate dehydrogenase-like family
protein		 0.75 0.3 -0.31
3 AT4G16840 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G35658.3); Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.75 0.32 -0.32
4 AT4G12890 Gamma interferon responsive lysosomal thiol (GILT)
reductase family protein		 -0.7 0.32 -0.32
5 AT2G44525 Protein of unknown function (DUF498/DUF598) 0.69 0.33 -0.33
6 AT3G20870 ZIP metal ion transporter family zinc transporter 29 0.68 0.33 -0.32
7 AT5G51510 unknown protein; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF1352 (InterPro:IPR009787); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink).		 0.67 0.3 -0.33
8 AT5G17600 RING/U-box superfamily protein -0.66 0.33 -0.3
9 AT3G28830 Protein of unknown function (DUF1216) -0.65 0.31 -0.31
10 AT3G06350 dehydroquinate dehydratase, putative / shikimate
dehydrogenase, putative		 EMBRYO DEFECTIVE 3004, MATERNAL
EFFECT EMBRYO ARREST 32		 0.64 0.34 -0.32
11 AT3G11200 alfin-like 2 alfin-like 2 0.64 0.32 -0.3
12 AT2G26810 Putative methyltransferase family protein 0.64 0.3 -0.34
13 AT1G08270 CONTAINS InterPro DOMAIN/s: MIT (InterPro:IPR007330); BEST
Arabidopsis thaliana protein match is: AAA-type ATPase
family protein (TAIR:AT2G27600.1); Has 1133 Blast hits to
1133 proteins in 252 species: Archae - 47; Bacteria - 0;
Metazoa - 540; Fungi - 145; Plants - 223; Viruses - 0;
Other Eukaryotes - 178 (source: NCBI BLink).		 0.63 0.3 -0.32
14 AT1G24340 FAD/NAD(P)-binding oxidoreductase family protein EMBRYO DEFECTIVE 2421, EMBRYO
DEFECTIVE 260		 0.63 0.3 -0.35
15 AT1G24575 unknown protein; Has 7 Blast hits to 7 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 0.62 0.33 -0.33
16 AT5G53340 Galactosyltransferase family protein 0.61 0.31 -0.31
17 AT4G21090 MITOCHONDRIAL FERREDOXIN 2 ARABIDOPSIS MITOCHONDRIAL
FERREDOXIN 2, MITOCHONDRIAL
FERREDOXIN 2		 0.61 0.31 -0.32
18 AT4G34350 4-hydroxy-3-methylbut-2-enyl diphosphate reductase CHLOROPLAST BIOGENESIS 6,
4-hydroxy-3-methylbut-2-enyl
diphosphate reductase, ISPH		 0.6 0.31 -0.33
19 AT2G20250 unknown protein; Has 10 Blast hits to 10 proteins in 6
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2;
Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).		 -0.6 0.31 -0.3
20 AT1G77580 Plant protein of unknown function (DUF869) -0.6 0.31 -0.31
21 AT1G19200 Protein of unknown function (DUF581) 0.59 0.3 -0.32
22 AT5G13400 Major facilitator superfamily protein -0.59 0.31 -0.32
23 AT3G25800 protein phosphatase 2A subunit A2 PDF1, protein phosphatase 2A
subunit A2, PR 65		 0.59 0.29 -0.31
24 AT3G26750 CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme
E2C-binding protein (InterPro:IPR019193); Has 26 Blast hits
to 25 proteins in 9 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 -0.59 0.29 -0.33
25 AT5G25120 ytochrome p450, family 71, subfamily B, polypeptide 11 ytochrome p450, family 71,
subfamily B, polypeptide 11		 -0.58 0.31 -0.32
26 AT5G06780 Emsy N Terminus (ENT)/ plant Tudor-like domains-containing
protein		 AtEML2, EMSY-like 2 0.58 0.32 -0.32
27 AT3G17611 RHOMBOID-like protein 14 RHOMBOID-like protein 14,
RHOMBOID-like protein 14		 0.57 0.31 -0.32
28 AT5G11910 alpha/beta-Hydrolases superfamily protein 0.57 0.33 -0.31
29 AT1G61700 RNA polymerases N / 8 kDa subunit 0.57 0.33 -0.31
30 AT1G03330 Small nuclear ribonucleoprotein family protein 0.57 0.3 -0.33
31 AT2G05920 Subtilase family protein -0.56 0.31 -0.3
32 AT5G22380 NAC domain containing protein 90 NAC domain containing protein 90,
NAC domain containing protein 90		 -0.55 0.3 -0.31
33 AT4G18230 FUNCTIONS IN: molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Oligosaccharide biosynthesis protein Alg14 like
(InterPro:IPR013969); Has 640 Blast hits to 640 proteins in
277 species: Archae - 4; Bacteria - 281; Metazoa - 94;
Fungi - 127; Plants - 57; Viruses - 0; Other Eukaryotes -
77 (source: NCBI BLink).		 0.55 0.32 -0.3
34 AT1G64670 alpha/beta-Hydrolases superfamily protein BODYGUARD1, 9-CIS EPOXYCAROTENOID
DIOXYGENASE DEFECTIVE 1		 -0.54 0.31 -0.32
35 AT4G09110 RING/U-box superfamily protein -0.54 0.29 -0.34
36 AT1G01920 SET domain-containing protein 0.54 0.32 -0.32
37 AT4G23910 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G10970.4); Has 52 Blast hits
to 52 proteins in 12 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 52; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).		 0.54 0.3 -0.32
38 AT5G32590 myosin heavy chain-related 0.54 0.32 -0.33
39 AT1G13110 cytochrome P450, family 71 subfamily B, polypeptide 7 cytochrome P450, family 71
subfamily B, polypeptide 7		 -0.54 0.31 -0.32
40 AT5G59130 Subtilase family protein -0.54 0.32 -0.31
41 AT5G38330 low-molecular-weight cysteine-rich 80 low-molecular-weight cysteine-rich
80		 -0.54 0.32 -0.3
42 AT1G09410 pentatricopeptide (PPR) repeat-containing protein 0.53 0.33 -0.33
43 AT5G67200 Leucine-rich repeat protein kinase family protein -0.52 0.31 -0.32
44 AT5G52480 RNI-like superfamily protein -0.52 0.31 -0.31
45 AT1G13130 Cellulase (glycosyl hydrolase family 5) protein -0.52 0.33 -0.31
46 AT5G22875 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 15 growth stages; Has 30201 Blast hits to
17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink).		 -0.51 0.32 -0.32
47 AT3G28780 Protein of unknown function (DUF1216) -0.5 0.34 -0.31
48 AT5G20390 Glycosyl hydrolase superfamily protein -0.5 0.33 -0.32
49 AT4G38940 Galactose oxidase/kelch repeat superfamily protein -0.5 0.31 -0.32
50 AT5G06500 AGAMOUS-like 96 AGAMOUS-like 96 -0.49 0.34 -0.33
51 AT2G33320 Calcium-dependent lipid-binding (CaLB domain) family
protein		 -0.49 0.32 -0.3
52 AT4G03156 small GTPase-related -0.49 0.31 -0.31
53 AT1G13220 nuclear matrix constituent protein-related CROWDED NUCLEI 2, LITTLE NUCLEI2 -0.49 0.33 -0.33
54 AT3G55550 Concanavalin A-like lectin protein kinase family protein -0.48 0.3 -0.34
55 AT5G04290 kow domain-containing transcription factor 1 kow domain-containing
transcription factor 1, SPT5-LIKE		 -0.47 0.31 -0.32
56 AT2G34100 unknown protein; Has 35333 Blast hits to 34131 proteins in
2444 species: Archae - 798; Bacteria - 22429; Metazoa -
974; Fungi - 991; Plants - 531; Viruses - 0; Other
Eukaryotes - 9610 (source: NCBI BLink).		 -0.47 0.33 -0.3
57 AT3G17740 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Protein of unknown function DUF1740
(InterPro:IPR013633); BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT3G17712.1); Has 409 Blast
hits to 335 proteins in 133 species: Archae - 1; Bacteria -
0; Metazoa - 140; Fungi - 188; Plants - 42; Viruses - 0;
Other Eukaryotes - 38 (source: NCBI BLink).		 -0.47 0.31 -0.31
58 AT1G02830 Ribosomal L22e protein family -0.47 0.3 -0.32
59 AT5G46100 Pentatricopeptide repeat (PPR) superfamily protein -0.46 0.34 -0.34
60 AT1G68170 nodulin MtN21 /EamA-like transporter family protein -0.46 0.3 -0.3
Metabolite information
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  CID Metabolite name Pathway Information Correlation link
Compound name Stereochemistry Aracyc name pcc 2.5% 97.5% PPI
61 C0186 NAD - NAD+ ammonia assimilation cycle II,
aspartate degradation II,
adenosine nucleotides degradation I,
plant sterol biosynthesis II,
UDP-D-xylose and UDP-D-glucuronate biosynthesis,
NAD biosynthesis I (from aspartate),
ethanol degradation IV (peroxisomal),
abscisic acid biosynthesis,
palmitate biosynthesis II (bacteria and plants),
zeaxanthin biosynthesis,
sucrose degradation to ethanol and lactate (anaerobic),
glutamate degradation IV,
stearate biosynthesis II (plants),
guanosine nucleotides degradation II,
glutamate degradation I,
mannitol degradation II,
glycerol-3-phosphate shuttle,
2-ketoglutarate dehydrogenase complex,
arginine degradation I (arginase pathway),
aerobic respiration (alternative oxidase pathway),
branched-chain alpha-keto acid dehydrogenase complex,
4-aminobutyrate degradation IV,
glycolysis I,
glycine cleavage complex,
lysine degradation II,
fatty acid beta-oxidation II (core pathway),
nitrate reduction II (assimilatory),
TCA cycle variation V (plant),
leucine degradation I,
thiamine biosynthesis II,
acetaldehyde biosynthesis I,
sorbitol degradation I,
glutamine biosynthesis III,
aerobic respiration (cytochrome c),
ethanol degradation I,
ascorbate biosynthesis I (L-galactose pathway),
glycolysis IV (plant cytosol),
benzoate biosynthesis II (CoA-independent, non-beta-oxidative),
siroheme biosynthesis,
TCA cycle variation III (eukaryotic),
isoleucine degradation I,
pyridine nucleotide cycling (plants),
tyrosine biosynthesis I,
gluconeogenesis I,
glycine betaine biosynthesis III (plants),
traumatin and (Z)-3-hexen-1-yl acetate biosynthesis,
NAD/NADH phosphorylation and dephosphorylation,
guanosine nucleotides degradation I,
purine nucleotides de novo biosynthesis II,
acetyl-CoA biosynthesis (from pyruvate),
serine biosynthesis,
photorespiration,
histidine biosynthesis,
glyoxylate cycle,
jasmonic acid biosynthesis,
alanine degradation II (to D-lactate),
a ubiquinone + NADH + H+ -> a ubiquinol + NAD+,
putrescine degradation IV,
brassinosteroid biosynthesis III,
fatty acid elongation -- saturated,
pyruvate fermentation to ethanol II,
beta-alanine biosynthesis II,
4-hydroxybenzoate biosynthesis V,
plant sterol biosynthesis,
urate biosynthesis/inosine 5'-phosphate degradation,
phenylalanine degradation III,
glutamate biosynthesis IV,
leucine biosynthesis,
fatty acid alpha-oxidation,
a ubiquinone + NADH + H+ -> NAD+ + a ubiquinol,
Fe(III)-reduction and Fe(II) transport,
purine nucleotide metabolism (phosphotransfer and nucleotide modification),
phenylethanol biosynthesis,
pyruvate fermentation to lactate,
superpathway of glyoxylate cycle and fatty acid degradation,
fatty acid omega-oxidation,
galactose degradation III,
ethanol degradation II (cytosol),
sucrose biosynthesis I,
valine degradation I,
folate transformations II 		0.68 0.45 -0.42 C0186
62 C0148 Methionine D,L-Methionine L-Methionine thiamine biosynthesis II,
S-adenosyl-L-methionine biosynthesis,
S-adenosyl-L-methionine cycle II,
tRNA charging,
methionine degradation II,
ethylene biosynthesis I (plants),
methionine degradation I (to homocysteine),
S-methylmethionine cycle,
methionine salvage pathway,
methionine biosynthesis II,
folate transformations II,
homomethionine biosynthesis,
lipoate biosynthesis and incorporation I,
S-methyl-5-thio-alpha-D-ribose 1-phosphate degradation 		-0.58 0.31 -0.31 C0148