Muatnts or Experiments arr10 arr12
Treatment No treatment
Control WT
Parental line Col-0
Growth condition 1/2 MS plate
Tissue Aerial part
Mutant description Disruption in cyctokinin signaling
Growth protocol After sterilization of seeds treated with hypochlorous acid (10%) for 10 min, seeds were kept in distilled water for 3 days under dark condition at 4 ˚C to enhance germination. Seedling were grown for 7 days on 1/2 MS agar plate (0.8% agar, pH 5.7) at 22 ˚C, 24 h continuous light condition.
Reference Yokoyama, A., Yamashino, T., Amano, Y., Tajima, Y., Imamura, A., Sakakibara, H., and Mizuno, T. (2007). Type-B ARR transcription factors, ARR10 and ARR12, are implicated in cytokinin-mediated regulation of protoxylem differentiation in roots of Arabidopsis thaliana. Plant Cell Physiol 48, 84-96.
Genes statistics
AGI code p-value Ex value cnt value Signal ratio Annotation Link
AT2G25180 0.0007 0.073 2.45 -5.08 response regulator 12
 tair
AT4G31920 0.0066 0.147 1.717 -3.54 response regulator 10
 tair
AT3G43880 0.0391 0.083 0.009 3.16 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT4G07526.3); Has 32 Blast hits
to 32 proteins in 2 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).
 tair
AT2G36120 0.0328 0.027 0.209 -2.98 Glycine-rich protein family
 tair
AT5G43550 0.0013 0.099 0.016 2.64 F-box associated ubiquitination effector family protein
 tair
AT3G62500 0.0056 0.039 0.235 -2.6 BEST Arabidopsis thaliana protein match is: SET domain
protein 14 (TAIR:AT3G61740.1); Has 66 Blast hits to 66
proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa -
0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink).
 tair
AT1G11070 0.0028 0.367 0.072 2.35 BEST Arabidopsis thaliana protein match is:
Hydroxyproline-rich glycoprotein family protein
(TAIR:AT1G61080.1); Has 579 Blast hits to 567 proteins in
152 species: Archae - 0; Bacteria - 68; Metazoa - 159;
Fungi - 113; Plants - 172; Viruses - 0; Other Eukaryotes -
67 (source: NCBI BLink).
 tair
AT5G49620 0.0085 0.037 0.177 -2.26 myb domain protein 78
 tair
AT5G13790 0.0049 0.052 0.215 -2.04 AGAMOUS-like 15
 tair
AT5G42170 0.0301 0.144 0.035 2.03 SGNH hydrolase-type esterase superfamily protein
 tair
AT4G02270 0.0275 0.051 0.202 -1.97 root hair specific 13
 tair
AT3G21180 0.0053 0.18 0.046 1.97 autoinhibited Ca(2+)-ATPase 9
 tair
AT5G08480 0.0366 0.05 0.175 -1.82 VQ motif-containing protein
 tair
AT1G66370 0.0213 0.45 0.13 1.79 myb domain protein 113
 tair
AT1G74620 0.0254 0.23 0.068 1.77 RING/U-box superfamily protein
 tair
AT5G32600 0.0412 0.128 0.038 1.75 transposable element gene
 tair
AT3G44760 0.0083 0.067 0.214 -1.67 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: root
 tair
AT3G23240 0.0158 0.215 0.069 1.64 ethylene response factor 1
 tair
AT4G11510 0.0343 0.193 0.063 1.61 ralf-like 28
 tair
AT4G16920 0.0405 0.235 0.08 1.56 Disease resistance protein (TIR-NBS-LRR class) family
 tair
AT2G45210 0.0461 0.197 0.582 -1.56 SAUR-like auxin-responsive protein family
AT4G30230 0.0158 0.119 0.333 -1.49 unknown protein; Has 42 Blast hits to 42 proteins in 5
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).
AT3G29635 0.0036 0.22 0.081 1.44 HXXXD-type acyl-transferase family protein
AT2G44260 0.0231 0.129 0.329 -1.35 Plant protein of unknown function (DUF946)
AT1G15890 0.0136 0.153 0.362 -1.24 Disease resistance protein (CC-NBS-LRR class) family
AT1G04700 0.0493 0.119 0.268 -1.17 PB1 domain-containing protein tyrosine kinase
AT1G03020 0.0028 0.555 1.238 -1.16 Thioredoxin superfamily protein
AT2G39060 0.0171 0.103 0.229 -1.15 Nodulin MtN3 family protein
AT5G38370 0.0458 0.278 0.125 1.15 Protein of unknown function (DUF1644)
AT4G28085 0.0470 0.234 0.505 -1.11 unknown protein; Has 30201 Blast hits to 17322 proteins in
780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338;
Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes
- 2996 (source: NCBI BLink).
AT2G30640 0.0169 0.233 0.111 1.08 transposable element gene
AT4G27400 0.0324 0.301 0.145 1.06 Late embryogenesis abundant (LEA) protein-related
AT1G05550 0.0135 0.288 0.139 1.05 Protein of unknown function (DUF295)
AT5G57760 0.0008 0.627 1.291 -1.04 unknown protein; Has 5 Blast hits to 5 proteins in 2
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).
AT4G00940 0.0006 0.215 0.44 -1.03 Dof-type zinc finger DNA-binding family protein
AT1G26590 0.0016 0.243 0.122 0.99 C2H2-like zinc finger protein
AT3G30775 0.0389 5.329 10.577 -0.99 Methylenetetrahydrofolate reductase family protein
AT4G26260 0.0133 0.182 0.362 -0.99 myo-inositol oxygenase 4
AT2G16890 0.0088 0.367 0.187 0.97 UDP-Glycosyltransferase superfamily protein
AT1G26820 0.0061 0.6 1.175 -0.97 ribonuclease 3
AT1G51430 0.0097 0.939 0.486 0.95 unknown protein; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT3G28370.1); Has 13 Blast hits
to 13 proteins in 4 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).
AT1G76420 0.0035 0.323 0.167 0.95 NAC (No Apical Meristem) domain transcriptional regulator
superfamily protein
AT1G20070 0.0472 2.201 1.163 0.92 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED
DURING: 11 growth stages; Has 26 Blast hits to 26 proteins
in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 2; Plants - 24; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink).
AT1G74550 0.0059 0.347 0.186 0.9 cytochrome P450
AT3G08870 0.0446 0.365 0.197 0.89 Concanavalin A-like lectin protein kinase family protein
AT1G63300 0.0278 0.396 0.215 0.88 Myosin heavy chain-related protein
AT1G77760 0.0080 13.207 24.057 -0.87 nitrate reductase 1
AT3G60290 0.0176 0.453 0.829 -0.87 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase
superfamily protein
AT5G39560 0.0496 0.272 0.149 0.87 Galactose oxidase/kelch repeat superfamily protein
AT2G43450 0.0303 0.174 0.095 0.87 unknown protein; Has 1 Blast hits to 1 proteins in 1
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0;
Plants - 1; Viruses - 0; Other Eukaryotes - 0 (source: NCBI
BLink).
AT5G23480 0.0245 0.326 0.18 0.86 SWIB/MDM2 domain;Plus-3;GYF
AT2G10070 0.0213 0.346 0.193 0.84 transposable element gene
AT3G12580 0.0486 4.741 2.644 0.84 heat shock protein 70
AT3G21470 0.0071 0.165 0.295 -0.84 Pentatricopeptide repeat (PPR-like) superfamily protein
AT2G24610 0.0275 0.34 0.194 0.81 cyclic nucleotide-gated channel 14
AT1G11260 0.0137 5.864 10.175 -0.8 sugar transporter 1
AT5G02760 0.0021 3.361 5.834 -0.8 Protein phosphatase 2C family protein
AT5G46730 0.0177 0.466 0.805 -0.79 glycine-rich protein
AT3G15310 0.0053 0.285 0.164 0.79 transposable element gene
AT1G52570 0.0054 0.502 0.293 0.78 phospholipase D alpha 2
AT1G68600 0.0089 2.837 1.663 0.77 Aluminium activated malate transporter family protein
AT1G50910 0.0072 0.399 0.233 0.77 unknown protein; Has 1105 Blast hits to 802 proteins in 217
species: Archae - 2; Bacteria - 177; Metazoa - 445; Fungi -
210; Plants - 58; Viruses - 6; Other Eukaryotes - 207
(source: NCBI BLink).
AT5G07690 0.0443 3.25 1.916 0.76 myb domain protein 29
AT1G53490 0.0049 0.214 0.363 -0.76 RING/U-box superfamily protein
AT3G21550 0.0269 2.359 4.003 -0.76 DUF679 domain membrane protein 2
AT5G53660 0.0151 0.516 0.308 0.75 growth-regulating factor 7
AT1G31760 0.0391 0.308 0.518 -0.75 SWIB/MDM2 domain superfamily protein
AT5G18600 0.0308 6.532 10.984 -0.75 Thioredoxin superfamily protein
AT1G80800 0.0285 3.074 1.832 0.75 pseudogene
AT1G62970 0.0109 0.43 0.723 -0.75 Chaperone DnaJ-domain superfamily protein
AT4G33040 0.0035 2.173 1.312 0.73 Thioredoxin superfamily protein
AT3G13674 0.0107 0.786 1.288 -0.71 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED
DURING: 11 growth stages; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G55205.1); Has 76 Blast
hits to 76 proteins in 10 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink).
AT2G17230 0.0108 4.679 7.664 -0.71 EXORDIUM like 5
AT1G23720 0.0031 0.322 0.523 -0.7 Proline-rich extensin-like family protein
AT1G74310 0.0465 0.605 0.374 0.7 heat shock protein 101
AT3G14470 0.0350 0.207 0.335 -0.69 NB-ARC domain-containing disease resistance protein
AT4G40080 0.0334 0.353 0.569 -0.69 ENTH/ANTH/VHS superfamily protein
AT3G23790 0.0199 0.969 0.603 0.69 AMP-dependent synthetase and ligase family protein
AT4G01030 0.0263 0.16 0.253 -0.67 pentatricopeptide (PPR) repeat-containing protein
AT2G31940 0.0437 0.207 0.33 -0.67 unknown protein; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant
structures; EXPRESSED DURING: 6 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT5G19875.1); Has 227 Blast hits to 227 proteins in
13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 227; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink).
AT5G66130 0.0213 0.795 0.499 0.67 RADIATION SENSITIVE 17
AT1G43790 0.0259 3.237 5.162 -0.67 tracheary element differentiation-related 6
AT1G66760 0.0044 1.316 2.081 -0.66 MATE efflux family protein
AT3G44740 0.0217 0.969 0.616 0.65 Class II aaRS and biotin synthetases superfamily protein
AT1G14020 0.0008 1.966 1.263 0.64 O-fucosyltransferase family protein
AT5G22300 0.0428 2.241 1.442 0.64 nitrilase 4
AT1G34760 0.0106 0.626 0.97 -0.63 general regulatory factor 11
AT5G08350 0.0249 1.446 2.219 -0.62 GRAM domain-containing protein / ABA-responsive
protein-related
AT1G28560 0.0148 0.441 0.288 0.62 snRNA activating complex family protein
AT1G57850 0.0368 0.129 0.199 -0.62 Toll-Interleukin-Resistance (TIR) domain family protein
AT2G41310 0.0399 1.077 0.702 0.62 response regulator 3
AT3G14370 0.0326 0.351 0.229 0.62 Protein kinase superfamily protein
AT1G65390 0.0427 0.692 1.062 -0.62 phloem protein 2 A5
AT2G06255 0.0258 0.204 0.133 0.62 ELF4-like 3
AT4G03500 0.0461 0.342 0.224 0.61 Ankyrin repeat family protein
AT2G25560 0.0108 1.993 1.308 0.61 DNAJ heat shock N-terminal domain-containing protein
AT3G59900 0.0099 0.295 0.45 -0.61 auxin-regulated gene involved in organ size
AT3G54130 0.0214 0.954 1.46 -0.61 Josephin family protein
AT2G23300 0.0472 0.205 0.313 -0.61 Leucine-rich repeat protein kinase family protein
AT5G04880 0.0007 0.633 0.415 0.61 pseudogene of ABC transporter family protein
AT2G17880 0.0202 0.831 1.271 -0.61 Chaperone DnaJ-domain superfamily protein
AT2G33850 0.0241 11.176 17.09 -0.61 unknown protein; FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; EXPRESSED IN: 17 plant structures;
EXPRESSED DURING: 9 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G28400.1); Has 3053 Blast hits to 2119 proteins in
133 species: Archae - 6; Bacteria - 52; Metazoa - 135;
Fungi - 96; Plants - 73; Viruses - 2; Other Eukaryotes -
2689 (source: NCBI BLink).

more...

Metabolites statistics
CID p-value Ex value cnt value Signal ratio Annotation Link
C0092 0.0406 2823.643 1122.853 1.33 Fumaric acid compound
C0184 0.0243 11.260 5.182 1.12 MST_3110.4
C0102 0.0164 63.102 133.781 -1.08 Glutamine compound
C0106 0.0134 100.065 48.671 1.04 Glyceric acid compound
C0252 0.0491 1742.728 928.262 0.91 Threonic acid compound
C0103 0.0145 0.004 0.002 0.76 Glutaric acid
C0170 0.0364 71.341 42.579 0.74 MST_2128.3
C0141 0.0290 1621.297 991.137 0.71 Malic acid compound
C0029 0.0026 17.385 11.099 0.65 3-Indolylacetonitrile compound
C0145 0.0113 193.667 127.667 0.60 Maltotetraose compound