4.0:Information of module
Red Light 4 h
In comparison with bri1-116 help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0048507 meristem development BP 3.250e-03
GO:0009825 multidimensional cell growth BP 6.076e-03
GO:0019932 second-messenger-mediated signaling BP 6.474e-03
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0010224 response to UV-B BP 2.498e-23
GO:0009411 response to UV BP 2.377e-18
GO:0009416 response to light stimulus BP 7.385e-15
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Red Light 4 h 		Log2 signal ratio
bri1-116
1 253667_at AT4G30170 [Peroxidase family protein] 0.196 -0.503
2 263443_at AT2G28630 KCS12, 3-ketoacyl-CoA synthase 12 0.183 -0.425
3 252415_at AT3G47340 ASN1, glutamine-dependent asparagine synthase 1, AT-ASN1, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, DIN6, DARK INDUCIBLE 6 0.172 0.065
4 251221_at AT3G62550 [Adenine nucleotide alpha hydrolases-like superfamily protein] 0.170 0.157
5 250810_at AT5G05090 [Homeodomain-like superfamily protein] 0.167 -0.129
6 262045_at AT1G80240 DGR1, DUF642 L-GalL responsive gene 1 0.153 -0.602
7 263045_at AT2G05370 unknown 0.143 -0.040
8 254761_at AT4G13195 CLE44, CLAVATA3/ESR-RELATED 44 0.140 0.030
9 261927_at AT1G22500 AtATL15, Arabidopsis thaliana Arabidopsis toxicos en levadura 15, ATL15, Arabidopsis toxicos en levadura 15 0.136 -0.217
10 253406_at AT4G32890 GATA9, GATA transcription factor 9 0.133 -0.081
11 259685_at AT1G63090 AtPP2-A11, phloem protein 2-A11, PP2-A11, phloem protein 2-A11 0.128 0.022
12 263981_at AT2G42870 HLH1, HELIX-LOOP-HELIX 1, PAR1, PHY RAPIDLY REGULATED 1 0.114 0.193
13 245696_at AT5G04190 PKS4, phytochrome kinase substrate 4 0.109 0.220
14 261845_at AT1G15960 ATNRAMP6, NRAMP6, NRAMP metal ion transporter 6 0.109 0.081
15 262542_at AT1G34180 anac016, NAC domain containing protein 16, NAC016, NAC domain containing protein 16 0.108 -0.016
16 264933_at AT1G61160 unknown 0.107 -0.068
17 256337_at AT1G72060 [serine-type endopeptidase inhibitors] 0.104 0.006
18 261226_at AT1G20190 ATEXP11, ATEXPA11, expansin 11, ATHEXP ALPHA 1.14, EXP11, EXPANSIN 11, EXPA11, expansin 11 0.104 -0.096
19 251320_at AT3G61530 PANB2 0.101 0.101
20 261921_at AT1G65900 unknown 0.096 -0.036
21 264405_at AT1G10210 ATMPK1, mitogen-activated protein kinase 1, MPK1, mitogen-activated protein kinase 1 0.096 -0.004
22 246284_at AT4G36780 BEH2, BES1/BZR1 homolog 2 0.096 0.130
23 257644_at AT3G25780 AOC3, allene oxide cyclase 3 0.094 -0.273
24 247239_at AT5G64640 [Plant invertase/pectin methylesterase inhibitor superfamily] 0.092 -0.070
25 251412_at AT3G60220 ATL4, TOXICOS EN LEVADURA 4, TL4, TOXICOS EN LEVADURA 4 0.091 -0.260
26 250277_at AT5G12940 [Leucine-rich repeat (LRR) family protein] 0.087 -0.401
27 253011_at AT4G37890 EDA40, embryo sac development arrest 40 0.086 -0.288
28 262643_at AT1G62770 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.086 0.117
29 250214_at AT5G13870 EXGT-A4, endoxyloglucan transferase A4, XTH5, xyloglucan endotransglucosylase/hydrolase 5 0.086 -0.663
30 266656_at AT2G25900 ATCTH, ATTZF1, A. THALIANA TANDEM ZINC FINGER PROTEIN 1 0.085 0.104
31 257701_at AT3G12710 [DNA glycosylase superfamily protein] 0.085 -0.009
32 250022_at AT5G18210 [NAD(P)-binding Rossmann-fold superfamily protein] 0.084 0.099
33 266581_at AT2G46140 [Late embryogenesis abundant protein] 0.083 -0.232
34 259502_at AT1G15670 KFB01, Kelch repeat F-box 1, KMD2, KISS ME DEADLY 2 0.083 0.031
35 247532_at AT5G61560 [U-box domain-containing protein kinase family protein] 0.083 -0.030
36 257728_at AT3G18295 unknown 0.080 -0.051
37 254418_at AT4G21480 STP12, sugar transporter protein 12 0.078 0.273
38 258077_at AT3G26110 [Anther-specific protein agp1-like] 0.076 0.012
39 265144_at AT1G51170 AGC2-3, AGC2 kinase 3, UCN, UNICORN 0.075 -0.002
40 252991_at AT4G38470 STY46, serine/threonine/tyrosine kinase 46 0.071 -0.250
41 266259_at AT2G27830 unknown 0.071 0.025
42 253057_at AT4G37670 NAGS2, N-acetyl-l-glutamate synthase 2 0.071 0.079
43 261002_at AT1G26520 [Cobalamin biosynthesis CobW-like protein] 0.070 -0.067
44 261063_at AT1G07520 [GRAS family transcription factor] 0.070 -0.079
45 247299_at AT5G63900 [Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain] 0.069 -0.053
46 249574_at AT5G37660 PDLP7, plasmodesmata-located protein 7 0.069 -0.036
47 265443_at AT2G20750 ATEXPB1, expansin B1, ATHEXP BETA 1.5, EXPB1, expansin B1 0.068 -0.403
48 258349_at AT3G17609 HYH, HY5-homolog -0.441 0.107
49 251658_at AT3G57020 [Calcium-dependent phosphotriesterase superfamily protein] -0.335 0.086
50 249063_at AT5G44110 ABCI21, ATP-binding cassette A21, ATNAP2, ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN, ATPOP1, POP1 -0.315 0.082
51 253088_at AT4G36220 CYP84A1, CYTOCHROME P450 84A1, FAH1, ferulic acid 5-hydroxylase 1 -0.314 0.283
52 247780_at AT5G58770 AtcPT4, cPT4, cis-prenyltransferase 4 -0.313 0.057
53 246966_at AT5G24850 CRY3, cryptochrome 3 -0.311 0.257
54 249769_at AT5G24120 ATSIG5, SIGMA FACTOR 5, SIG5, SIGMA FACTOR 5, SIGE, sigma factor E -0.291 0.120
55 252123_at AT3G51240 F3'H, F3H, flavanone 3-hydroxylase, TT6, TRANSPARENT TESTA 6 -0.286 0.060
56 250420_at AT5G11260 HY5, ELONGATED HYPOCOTYL 5, TED 5, REVERSAL OF THE DET PHENOTYPE 5 -0.272 0.015
57 255793_at AT2G33250 unknown -0.272 0.170
58 251020_at AT5G02270 ABCI20, ATP-binding cassette I20, ATNAP9, ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 9, NAP9, non-intrinsic ABC protein 9 -0.268 -0.072
59 248625_at AT5G48880 KAT5, 3-KETO-ACYL-COENZYME A THIOLASE 5, PKT1, PEROXISOMAL-3-KETO-ACYL-COA THIOLASE 1, PKT2, peroxisomal 3-keto-acyl-CoA thiolase 2 -0.264 -0.065
60 250207_at AT5G13930 ATCHS, CHS, CHALCONE SYNTHASE, TT4, TRANSPARENT TESTA 4 -0.249 0.231
61 248049_at AT5G56090 COX15, cytochrome c oxidase 15 -0.246 0.100
62 256751_at AT3G27170 ATCLC-B, CLC-B, chloride channel B -0.238 -0.117
63 250794_at AT5G05270 AtCHIL, CHIL, chalcone isomerase like -0.231 0.366
64 263787_at AT2G46420 unknown -0.229 0.029
65 260987_at AT1G53590 NTMC2T6.1, NTMC2TYPE6.1 -0.229 -0.029
66 258167_at AT3G21560 BRT1, Bright Trichomes 1, UGT84A2, UDP-glucosyl transferase 84A2 -0.228 -0.126
67 253943_at AT4G27030 FAD4, FATTY ACID DESATURASE 4, FADA, fatty acid desaturase A -0.221 0.166
68 255298_at AT4G04840 ATMSRB6, methionine sulfoxide reductase B6, MSRB6, methionine sulfoxide reductase B6 -0.215 0.202
69 259379_at AT3G16350 [Homeodomain-like superfamily protein] -0.214 -0.045
70 257876_at AT3G17130 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.214 0.519
71 249191_at AT5G42760 [Leucine carboxyl methyltransferase] -0.205 0.039
72 258299_at AT3G23410 ATFAO3, ARABIDOPSIS FATTY ALCOHOL OXIDASE 3, FAO3, fatty alcohol oxidase 3 -0.204 0.350
73 256542_at AT1G42550 PMI1, PLASTID MOVEMENT IMPAIRED1 -0.204 0.180
74 249798_at AT5G23730 EFO2, EARLY FLOWERING BY OVEREXPRESSION 2, RUP2, REPRESSOR OF UV-B PHOTOMORPHOGENESIS 2 -0.200 0.067
75 251727_at AT3G56290 unknown -0.198 0.008
76 258321_at AT3G22840 ELIP, ELIP1, EARLY LIGHT-INDUCABLE PROTEIN -0.196 -0.150
77 251670_at AT3G57190 PrfB3, peptide chain release factor 3 -0.192 0.087
78 253039_at AT4G37760 SQE3, squalene epoxidase 3 -0.188 0.020
79 264186_at AT1G54570 PES1, phytyl ester synthase 1 -0.182 -0.020
80 260072_at AT1G73650 [FUNCTIONS IN: oxidoreductase activity, acting on the CH-CH group of donors] -0.180 0.159
81 257033_at AT3G19170 ATPREP1, presequence protease 1, ATZNMP, PREP1, presequence protease 1 -0.177 0.132
82 252607_at AT3G44990 AtXTH31, ATXTR8, XTH31, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 31, XTR8, xyloglucan endo-transglycosylase-related 8 -0.175 -0.083
83 253736_at AT4G28780 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.172 0.429
84 246468_at AT5G17050 UGT78D2, UDP-glucosyl transferase 78D2 -0.168 0.074
85 259787_at AT1G29460 SAUR65, SMALL AUXIN UPREGULATED RNA 65 -0.166 -0.680
86 263122_at AT1G78510 AtSPS1, SPS1, solanesyl diphosphate synthase 1 -0.163 0.145
87 253425_at AT4G32190 [Myosin heavy chain-related protein] -0.162 -0.022
88 263386_at AT2G40150 TBL28, TRICHOME BIREFRINGENCE-LIKE 28 -0.162 0.288
89 266832_at AT2G30040 MAPKKK14, mitogen-activated protein kinase kinase kinase 14 -0.159 -0.318
90 255764_at AT1G16720 HCF173, high chlorophyll fluorescence phenotype 173 -0.158 0.135
91 258895_at AT3G05600 [alpha/beta-Hydrolases superfamily protein] -0.157 0.459
92 246911_at AT5G25810 tny, TINY -0.157 -0.115
93 266097_at AT2G37970 AtHBP2, HBP2, haem-binding protein 2, SOUL-1 -0.156 0.049